BAC Information

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BAC

Clone NameB6Ng01-171L21
Chromosome14 (Build37)
Map Location 114,592,064 - 114,593,144
singlet/doubletsinglet
Overlap genenone
Upstream geneTpm3-rs7, LOC100043510, LOC382947
Downstream geneLOC668791, LOC100043821, LOC100043521, Gpc5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171L21.bB6Ng01-171L21.g
ACCGA000541GA000542
length1,0761,063
definitionB6Ng01-171L21.b B6Ng01-171L21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccctacactggggcatcaagccttaacaggaccaagggcctctc
ctctcattgatgtcccacaaggccttcctctgctacatgtgtgattggag
ccatgggtcctctcatgtgtgctctttggttgatggtttagttccctggg
agctctgaggatactggttggtccatattgttgttcctcctatagggctg
gaaaccccttcagctccttgggtcctttctctagctcctccattagggac
cctgtgctcagtccaatggatggctgggagcatccacttctgtatttgtc
aggcactggcagagcctctcaggagacagctgtattagggttctgtcagc
aagcacttgttggcatacacaatagtgtctgtgctttgtaactgtatatg
ggatggatcctcaggtgggacagtctctcgatggcctttcattcagtttc
tgctatacactttgtctctgtatctccagggagagggaacttatagagtc
catctccagcaggaagacaaggcatcaagtgagggagggagttgctatcc
cacagtcaaaactctgacctataattgttactgtctgaaagaactgcagg
gatggaaatagaaaggagcctgaggaaaagaagttccagcaacaggcata
aagtgggatccaggtcaaggggaggtcccaaggcctgacactattactga
ggctatagagcactcacaaaaagggacctatcatgattgtcctctgaaag
acccaacaagcagctgagtcagatatagatatttattcccaaccaatgga
cagaagtagctgcccactgttgttgaattacggaaaggctggaagaaggt
gagaaggtgaccctgtaggaggacaagcagtatcaattagcctggacccc
ggaatattttctcaatcactggaccaccatcagacagcatacacaagctg
atatgagttccccacacacatacaggagaggactctggtctgtgtcattc
aaagatgatgcacttaacctcaagagaactggaaggctcagagaatttag
agatcctggtggtattgggaaggagg

gaattcaatgcacatctaagaaacttagagctatcataatgtaaataaga
tacttagattctatttgccagaaaataaaaatggcagatttaaatcctac
atattcctgcttaatcaaaacttaagactcatttgtttgaccagttctta
aggggtttgttatatacacaggtttacaaactactgcttatgacaatgac
aaaaataggaaagaagatttagcttaggaattaggtttcatagatcaatg
caatcttttaaagcattttagattatatttgatggaatatactataagca
gaaaaggtaatttatggttttaagatccaagatatctctgatcttcagaa
ataagaaatgtaaaaagaaaagggtattatcaaccttacccagtcaaccc
cagcaatttccactcttaccaaattttcttctacatattataaagcagct
gatacacaaattattttaagtcagtcatatatatttttctcttgtagaca
tgacaattatatacttatttctctcattttcaaaagcataaatgatatta
tttgataaattttgcagtagcaattcagttattattttattttgtttgtg
gttgaatcaggcattcttgtagcagttaggactctacttcaaaccaattc
aatttcattttacaatcagtgtatccaaattattttctttcatgtttatg
ccatttaaagttttaccatatgaagttgagattggctctttcaaggtttg
taaagaattgtgttgaaattttggtggcaattgcatgagtctgtagattg
cttttggtaaaatgtccattttaactatgttaatactacttatctatggg
ttgaatgatatcagcatggtataagcatgaaaatagacaggttgaacaat
gcaatagaatttaagagacagaaaaaaatccccacacactatagacactt
ttatgtttgacaagaaacaacaacacaaaaaacctacatagagaaaagaa
tcatcttcacaaatgtgctgattactgatttctactgtagaccatgcaat
ttttcatcctcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_114592064_114593144
seq2: B6Ng01-171L21.g_66_1128 (reverse)

seq1  TTGAGGATGAAAAATATTTGCATTGTTCTACAAGTAGAAATACAGTTATA  50
      ||||||||||||||   ||||| || ||||| ||||||||| |||| || 
seq2  TTGAGGATGAAAAA---TTGCA-TGGTCTAC-AGTAGAAAT-CAGTAAT-  43

seq1  CCAGCACCATTTGTTGAAGATGATTTCTTTTTCTTCTATTGTAGGTTTTT  100
       ||||| |||||| ||||||||| |||||||   |||| |||||||||  
seq2  -CAGCA-CATTTG-TGAAGATGA-TTCTTTT--CTCTA-TGTAGGTTT--  84

seq1  TTGTTTGTTTGTTTGTTTTCTTTGTCAAACAT-AAAGTGTCTATAGGTGT  149
         ||||| |  ||||||   ||||||||||| |||||||||||| ||||
seq2  ---TTTGTGTTGTTGTTT--CTTGTCAAACATAAAAGTGTCTATA-GTGT  128

seq1  GT-GGGATTTTTTTCTGTCTCTTTAATTCTATTGCATTGTTCAACCTGTC  198
      || |||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGGGGATTTTTTTCTGTCTCTTAAATTCTATTGCATTGTTCAACCTGTC  178

seq1  TATTTTCATGCTTATACCATGCTAATATCATTCAA-CCATAGATAAGTAG  247
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  TATTTTCATGCTTATACCATGCTGATATCATTCAACCCATAGATAAGTAG  228

seq1  TATTAACATAG-TAAAATGGACATTTTACCAAAAGCAATCTACAGACTCA  296
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TATTAACATAGTTAAAATGGACATTTTACCAAAAGCAATCTACAGACTCA  278

seq1  TGCAATTGCCACCAAAATTTCAACACAATTCTTTACAAACCTTGAAAGAG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTGCCACCAAAATTTCAACACAATTCTTTACAAACCTTGAAAGAG  328

seq1  CCAATCTCAACTTCATATGGTAAAACTTTAAATGGCATAAACATGAAAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCTCAACTTCATATGGTAAAACTTTAAATGGCATAAACATGAAAGA  378

seq1  AAATAATTTGGATACACTGATTGTAAAATGAAATTGAATTGGTTTGAAGT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTGGATACACTGATTGTAAAATGAAATTGAATTGGTTTGAAGT  428

seq1  AGAGTCCTAACTGCTACAAGAATGCCTGATTCAACCACAAACAAAATAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTAACTGCTACAAGAATGCCTGATTCAACCACAAACAAAATAAA  478

seq1  ATAATAACTGAATTGCTACTGCAAAATTTATCAAATAATATCATTTATGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAACTGAATTGCTACTGCAAAATTTATCAAATAATATCATTTATGC  528

seq1  TTTTGAAAATGAGAGAAATAAGTATATAATTGTCATGTCTACAAGAGAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAATGAGAGAAATAAGTATATAATTGTCATGTCTACAAGAGAAA  578

seq1  AATATATATGACTGACTTAAAATAATTTGTGTATCAGCTGCTTTATAATA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATATGACTGACTTAAAATAATTTGTGTATCAGCTGCTTTATAATA  628

seq1  TGTAGAAGAAAATTTGGTAAGAGTGGAAATTGCTGGGGTTGACTGGGTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAAGAAAATTTGGTAAGAGTGGAAATTGCTGGGGTTGACTGGGTAA  678

seq1  GGTTGATAATACCCTTTTCTTTTTACATTTCTTATTTCTGAAGATCAGAG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATAATACCCTTTTCTTTTTACATTTCTTATTTCTGAAGATCAGAG  728

seq1  ATATCTTGGATCTTAAAACCATAAATTACCTTTTCTGCTTATAGTATATT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGGATCTTAAAACCATAAATTACCTTTTCTGCTTATAGTATATT  778

seq1  CCATCAAATATAATCTAAAATGCTTTAAAAGATTGCATTGATCTATGAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATATAATCTAAAATGCTTTAAAAGATTGCATTGATCTATGAAA  828

seq1  CCTAATTCCTAAGCTAAATCTTCTTTCCTATTTTTGTCATTGTCATAAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATTCCTAAGCTAAATCTTCTTTCCTATTTTTGTCATTGTCATAAGC  878

seq1  AGTAGTTTGTAAACCTGTGTATATAACAAACCCCTTAAGAACTGGTCAAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGTTTGTAAACCTGTGTATATAACAAACCCCTTAAGAACTGGTCAAA  928

seq1  CAAATGAGTCTTAAGTTTTGATTAAGCAGGAATATGTAGGATTTAAATCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAGTCTTAAGTTTTGATTAAGCAGGAATATGTAGGATTTAAATCT  978

seq1  GCCATTTTTATTTTCTGGCAAATAGAATCTAAGTATCTTATTTACATTAT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTTATTTTCTGGCAAATAGAATCTAAGTATCTTATTTACATTAT  1028

seq1  GATAGCTCTAAGTTTCTTAGATGTGCATTGAATTC  1081
      |||||||||||||||||||||||||||||||||||
seq2  GATAGCTCTAAGTTTCTTAGATGTGCATTGAATTC  1063


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