BAC Information

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BAC

Clone NameB6Ng01-171O13
Chromosome18 (Build37)14 (Build37)
Map Location 4,338,611 - 4,339,73386,220,071 - 86,220,584
singlet/doubletsingletsinglet
Overlap geneMap3k8
Upstream geneEG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909
Downstream genePapd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil, Zfp438
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-171O13.bB6Ng01-171O13.g
ACCGA000669GA000670
length1,108789
definitionB6Ng01-171O13.b B6Ng01-171O13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(4,338,611 - 4,339,733)(86,220,071 - 86,220,584)
sequence
gaattcacagaaaatacaaaactaaatgcttattcttcaagaattcaaac
tctggctctgctggtgactgggtaatatcaggcaccatgttacaatctgt
ccgttgtcttcttataaaataggataatagcagtcatctgcctgttatac
cagtatttacacacaataattttaaggaagaaataattcatttaaggtac
taagtgaactataagttgactattgttctctaacagttttaaagatgaat
tctgagtatcccttacttgagaaacttagaatcaaaaatcagatttagaa
gctcatgtttggaatatttgatatttttatgggcttttcttttcaccttg
tctgtctgtctgtgtaatatatacgacactgcacatatgacacttcccac
cttgaggcgggatctcttattcatagtcctgtattccaggctactctcct
gtgagcgttggggaagactcctgtctacttagatctacccatagtcacac
taggtctaccatacatggctttatttgggttctcaggatttgaactcagg
tccctgggcttgtgtagcaagcactttacttggcaacctctctctaggtc
ttgtctagctttttagacgtttggattaggaatgctcaactggtcctctg
ttttggcactgaattgtctgtaagtgctttgtgttgtatatataaacagt
aataaaaaatatctataaatataaccatgcatatttaaagtcttatcata
gaaatagtaaaaaaggtaaaatgtaaaatgaatttgttctggtgacaacg
atcatccaatgttgccattttgtccccttcattgctgattgtcacagcat
ttccagaccatcaccattacaatcaatcaattacctctgttccccggagg
tccttgggaagatagacatcttcagtcatcttaacactcaggccaaatct
accaaacagcttttgtagacatgaatacaatgttgctagctgcaacgaga
ggggttttatgtggagtatgcatcctacccacagtaatcatctagaaaca
gcagtccagctagccatggaaacgcttcgtataatggactcaggtgtttc
accgaaga

gaattcttcactaaagccatctggccctgtgctttttaaatttaatttaa
tttaattaattatttattcatttatttggctaggaggtttttaatgattt
cttctatttccttagggtatattgttctgttttgatagtttacctgcttt
tgattcaacgtttgtacattgtatctttctaaaaacaaaacaaaagaaaa
caaaacatccatttcatttagattttccagttttgttgagtataggcttt
tgcaataggatctaatgattttctgaatttcctcagtttcagtctttatg
tctcccttttcatttctgattttgttaatttggatgctgtctctgtgccc
tctggttagtctggctaagggtttatctattttgttgatttttgcaaaga
accaacttttggttttgttgattctttgtattgttctctttgtttctatt
tggatgatctactcttcttgggtgtgtttggttttttgttgttattgttg
ttgttgttgttctggggctttaaggtgttctattaagttgctaatttaga
atctctcctatttctttacagggaacttaattctatgattttcctcttag
cactgctttcattctattccataaatttgggtatgctgtgtcattatttt
tattgatttccaggaagtctttaatttctttatttcttccctaaccaagt
tttcattgattagaagtgctcagtttccatgggtatgtgggtttctcttg
ctttgttgttattgaattctagctttagtccatggtggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr18_4338611_4339733
seq2: B6Ng01-171O13.b_51_1158

seq1  GAATTCACAGAAAATACAAAACTAAATGCTTATTCTTCAAGAATTCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGAAAATACAAAACTAAATGCTTATTCTTCAAGAATTCAAAC  50

seq1  TCTGGCTCTGCTGGTGACTGGGTAATATCAGGCACCATGTTACAATCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTGCTGGTGACTGGGTAATATCAGGCACCATGTTACAATCTGT  100

seq1  CCGTTGTCTTCTTATAAAATAGGATAATAGCAGTCATCTGCCTGTTATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTGTCTTCTTATAAAATAGGATAATAGCAGTCATCTGCCTGTTATAC  150

seq1  CAGTATTTACACACAATAATTTTAAGGAAGAAATAATTCATTTAAGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATTTACACACAATAATTTTAAGGAAGAAATAATTCATTTAAGGTAC  200

seq1  TAAGTGAACTATAAGTTGACTATTGTTCTCTAACAGTTTTAAAGATGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAACTATAAGTTGACTATTGTTCTCTAACAGTTTTAAAGATGAAT  250

seq1  TCTGAGTATCCCTTACTTGAGAAACTTAGAATCAAAAATCAGATTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTATCCCTTACTTGAGAAACTTAGAATCAAAAATCAGATTTAGAA  300

seq1  GCTCATGTTTGGAATATTTGATATTTTTATGGGCTTTTCTTTTCACCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTTTGGAATATTTGATATTTTTATGGGCTTTTCTTTTCACCTTG  350

seq1  TCTGTCTGTCTGTGTAATATATACGACACTGCACATATGACACTTCCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTGTAATATATACGACACTGCACATATGACACTTCCCAC  400

seq1  CTTGAGGCGGGATCTCTTATTCATAGTCCTGTATTCCAGGCTACTCTCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGCGGGATCTCTTATTCATAGTCCTGTATTCCAGGCTACTCTCCT  450

seq1  GTGAGCGTTGGGGAAGACTCCTGTCTACTTAGATCTACCCATAGTCACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCGTTGGGGAAGACTCCTGTCTACTTAGATCTACCCATAGTCACAC  500

seq1  TAGGTCTACCATACATGGCTTTATTTGGGTTCTCAGGATTTGAACTCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCTACCATACATGGCTTTATTTGGGTTCTCAGGATTTGAACTCAGG  550

seq1  TCCCTGGGCTTGTGTAGCAAGCACTTTACTTGGCAACCTCTCTCTAGGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGGCTTGTGTAGCAAGCACTTTACTTGGCAACCTCTCTCTAGGTC  600

seq1  TTGTCTAGCTTTTTAGACGTTTGGATTAGGAATGCTCAACTGGTCCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTAGCTTTTTAGACGTTTGGATTAGGAATGCTCAACTGGTCCTCTG  650

seq1  TTTTGGCACTGAATTGTCTGTAAGTGCTTTGTGTTGTATATATAAACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCACTGAATTGTCTGTAAGTGCTTTGTGTTGTATATATAAACAGT  700

seq1  AATAAAAAATATCTATAAATATAACCATGCATATTTAAAGTCTTATCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAAAATATCTATAAATATAACCATGCATATTTAAAGTCTTATCATA  750

seq1  GAAATAGTAAAAAAGGTAAAATGTAAAATGAATTTGTTCTGGTGACAACG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGTAAAAAAGGTAAAATGTAAAATGAATTTGTTCTGGTGACAACG  800

seq1  ATCATCCAATGTTGCCATTTTGTCCCCTTCATTGCTGATTGTCACAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAATGTTGCCATTTTGTCCCCTTCATTGCTGATTGTCACAGCAT  850

seq1  TTCCAGACCATCACCAATACAATCAATCAATTACCTCTGTTCCCCGGAGG  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCCAGACCATCACCATTACAATCAATCAATTACCTCTGTTCCCCGGAGG  900

seq1  TCCTTGGGAAGATAGACATCTTCAGTCATCTTAACACTCAGGCCAAAATC  950
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCTTGGGAAGATAGACATCTTCAGTCATCTTAACACTCAGGCC-AAATC  949

seq1  TACCAAAACAGCTTTTGTAGACATGAATACAATGTTGCTAGCTGCAACGA  1000
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACC-AAACAGCTTTTGTAGACATGAATACAATGTTGCTAGCTGCAACGA  998

seq1  GAGGGGTTTTTAATGT-GAGTTAATGCATCCTAACCCAACAGGAAAATCA  1049
      ||||||||||  |||| ||||  ||||||||||  || ||||   |||||
seq2  GAGGGGTTTT--ATGTGGAGT--ATGCATCCTA--CCCACAG--TAATCA  1040

seq1  TCTAG-AACAGCAAGTTCCAAGCAGAGCAGAAGGAAACGCTTCTGATAAT  1098
      ||||| |||||| |||  | |||  |||  | |||||||||||  |||||
seq2  TCTAGAAACAGC-AGT--CCAGC-TAGC-CATGGAAACGCTTCGTATAAT  1085

seq1  -GACTCAGGTGGTTCACCCCAGAAGA  1123
       |||||||||| ||||||   |||||
seq2  GGACTCAGGTGTTTCACC---GAAGA  1108


seq1: chr14_86220071_86220584
seq2: B6Ng01-171O13.g_363_856 (reverse)

seq1  ACCACCATGGACTAAAGCTGATCTTCAATAACAACATAAATAATGGAAAG  50
      |||||||||||||||||||    ||||||||||||| ||  ||  |||| 
seq2  ACCACCATGGACTAAAGCTAGAATTCAATAACAACA-AAGCAAGAGAAA-  48

seq1  CCAACATTCACATGGAAAATGAACAACACTCTTCTCAATGACACCTTGGT  100
      || |||| | |||||||| ||| ||    |||  ||||||| | ||||||
seq2  CCCACATACCCATGGAAACTGAGCA--CTTCTAATCAATGAAAACTTGGT  96

seq1  CAAGGAAAGAATAAAGAAAGAAATTAAAGA-TTTTTAGAGTTTAATGAAA  149
       | |    ||| ||| |||||||||||||| ||  | ||  | ||| |||
seq2  TAGG----GAAGAAATAAAGAAATTAAAGACTTCCTGGAAATCAATAAAA  142

seq1  ATGAAGCCAAAACATACCTAAACTTATGCGACACAATGAAAGCATTTCTA  199
      || | | || | |||||| ||| |||||  | | |||||||||| | |||
seq2  ATAATGACACAGCATACCCAAATTTATGGAATAGAATGAAAGCAGTGCTA  192

seq1  TCAGGGAAACTCATAGCTCTGAGTGCCTCCAAAAAGAAACTACAGAGAGC  249
        | ||||| ||||||   | ||| || |   |||||||    |||||  
seq2  AGA-GGAAAATCATAGAATTAAGTTCC-CTGTAAAGAAATAGGAGAGATT  240

seq1  ACACACTGCCAGCTTGACAACACACCTAAAAGCTCTAAAAAAAAGGAAGC  299
        | | |  || ||| | |  |||||| ||||| | | || ||      |
seq2  CTAAATTAGCAACTTAATAGAACACCTTAAAGCCCCAGAACAA------C  284

seq1  AAATTCACCCAAGAGGAGTAGATGGCAGGAAATATTCAAACTCAGGGGTG  349
      ||       ||| |  |    ||  ||  ||| |  ||||| ||     |
seq2  AA-------CAACAACA----ATAACAACAAAAAACCAAACACACCCAAG  323

seq1  AA------ATCAACCAAGTGGAAACAAGAAGAACTATTCAAAGAATTAAC  393
      ||      |||| |||| | |||||||  ||||| || |||||||| |||
seq2  AAGAGTAGATCATCCAAATAGAAACAAAGAGAACAATACAAAGAATCAAC  373

seq1  CAAACGAGGAGTTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCCTT  443
       |||| |  |||||||||||||  ||||||||||| ||||||||||||||
seq2  AAAACCAAAAGTTGGTTCTTTGCAAAAATCAACAAAATAGATAAACCCTT  423

seq1  AGCCAGACTCACTAGAGGGCACAGGGACAGCATCCTAATTAACAAAATCA  493
      ||||||||| || ||||||||||| |||||||||| ||||||||||||||
seq2  AGCCAGACTAACCAGAGGGCACAGAGACAGCATCCAAATTAACAAAATCA  473

seq1  GAAATGAAAAGGGAGACATAA  514
      |||||||||||||||||||||
seq2  GAAATGAAAAGGGAGACATAA  494


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