BAC Information

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BAC

Clone NameB6Ng01-172F01
Chromosome14 (Build37)
Map Location 123,994,804 - 124,161,788
singlet/doubletdoublet
Overlap geneVgcnl1, Itgbl1, LOC668700
Upstream genePcca, BC006662, 4930594M22Rik, Tmtc4
Downstream geneFgf14, GA_x5J8B7W4W3R-189177-188236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172F01.bB6Ng01-172F01.g
ACCGA000966GA000967
length1,022371
definitionB6Ng01-172F01.b B6Ng01-172F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,160,367 - 124,161,788)(123,994,804 - 123,995,166)
sequence
gaattcaagtagggcaagaatctgcagaccaggactaaagcaaagatcat
ggaagaacactactcactggcttgttactctgcctcattttcaactacat
ttctgccaggtctacctgaccaggagtggcattgccaacaatgggctgta
ccctcccacatccatcattgagcaagaaaatgttctacagacttgcctac
aggaaagtcttagtagcattttctcagttgagttttcctcttttcagata
actcttaacttgtcttaagttgaccgaaaactaaactcaccatgtataag
attttcaaattttattttaaaatattttatttatctaaaaataaatataa
ataagtaaataaaataatggttagtatacgtgtgtgtgtgtgtatgtgtg
tgtgtgagagagagagacagagacagagagagagagagagagactgtgta
tgagcacacatactatgatttagatcatatatgaaacagtggaacaataa
caataaagacaacttttttctaggtaataaaaatggtattgtgagatttg
aagtataatcttggtaatagaataaggtttttagtaaagaggtaagaaaa
tcttaggaaatagagatttaagacaacttcattttaattacaaacagata
aggtaccctcaacttttttggccccatttttttttaaaaactcctttctt
aaaacagtttgtccagttgtaattatcattttgctcaaacttttgtggat
agtacttgagttataggataaacgtcaaacccatctattatttagatgca
attataaagcaataatccccaaaatgacgatcattgcagtcaacacaata
cagtatttaccttttgaatagtaaaatcacatataaacatatttcagctc
atgcaaggactgatttctcatacttcattgcttaaaggtaagaaactaat
ctctctattgaccatagcagtgcacatgttcaaactatttggtcagctgc
tttaaaaacacttgtctaaaca

agactgcagtacttgtgatgaccttcagcacatcaaatacgttatttgat
tggttgacctttcttttagggatctggtcagtaagaatacttcttagggg
agagattgagggaggcagctaaagaacttctcaggcacaaattagatact
attgttcatggatgaaattacctcgctcttttctgaccaaagaacataat
aggaactctcagcacatacaaggccctaaaatagaccacctgattcttca
caaattcttgccagctgctgcctgagcacaacctatctgccacttcctac
tcctcaggcctctccaaagtaccacctgctctgtgtgtgtgtgtatctac
acacatttatgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_124160367_124161788
seq2: B6Ng01-172F01.b_46_1067 (reverse)

seq1  TGTTTAGAAGGTACATATCAACTAAGCCATCTCTACACCATTTCAGTTCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTTTATTGATGAGAGATAGATTACAGAACTCAATGCAGCCTAATTTTTTT  100
                                                        
seq2  --------------------------------------------------  0

seq1  AGCAAAAAGTTATTCTTAAAATATCTGAACCATGGTTCCAAAGCTAGACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  CTGTCAAGATTTCAGAAAAAATATTATTAAGCAAATTGATTTTTAATAGC  200
                                                        
seq2  --------------------------------------------------  0

seq1  TACCACCACTCATACAAATGTACTTTGTCTCATTCATTTGTTTTCTGTAA  250
                                                        
seq2  --------------------------------------------------  0

seq1  TACAGTATATTGGATATAGGGACAGTTACCCCGGGTACATGAGTCATCAT  300
                                                        
seq2  --------------------------------------------------  0

seq1  TCTTTGGAGGGCCTGACACTAATCTTGTATGTTTTTTGCACCCCATATGA  350
                                                        
seq2  --------------------------------------------------  0

seq1  GTATTTGTTGACCTGAAGAATGAAACAAAGAACTAAATAACTGTAACTTG  400
                                                      ||
seq2  ------------------------------------------------TG  2

seq1  TTTGTACAAGTGTTTTTAAAGCAGCTGACCAAATAGTTTTGAACATGTGC  450
      |||  ||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTTAGACAAGTGTTTTTAAAGCAGCTGACCAAATAG-TTTGAACATGTGC  51

seq1  ACTGCTAT-GTCAATAGAGAGATTAGTTTCTTTCCTTTAAGCAGATGAAG  499
      |||||||| ||||||||||||||||||||||| |||||||||| ||||| 
seq2  ACTGCTATGGTCAATAGAGAGATTAGTTTCTTACCTTTAAGCA-ATGAA-  99

seq1  GTATGAGAAATCAGTCCTTGCATTGAGCTGAAATATGTTTATATGTGGAT  549
      |||||||||||||||||||||| ||||||||||||||||||||||| |||
seq2  GTATGAGAAATCAGTCCTTGCA-TGAGCTGAAATATGTTTATATGT-GAT  147

seq1  TTTACTATTCAAAGGTAAAATACTGTATTGTGTTGACTGCAATGATCGTC  599
      ||||||||||||| |  |||||||||||||||||||||||||||||||||
seq2  TTTACTATTCAAAAGGTAAATACTGTATTGTGTTGACTGCAATGATCGTC  197

seq1  ATTTT-GGGATTATTGCTTTATAATTTGCATCTAATTAATAGAT-GGTTT  647
      ||||| |||||||||||||||||| |||||||||| |||||||| |||||
seq2  ATTTTGGGGATTATTGCTTTATAA-TTGCATCTAAATAATAGATGGGTTT  246

seq1  GACGTTTATCCTATAACTCAAGTACTATCCACAAAAGTTTGAGC-AAATG  696
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACGTTTATCCTATAACTCAAGTACTATCCACAAAAGTTTGAGCAAAATG  296

seq1  ATAATTACAACTGGACAAACTGTTTTAAGAAAGGAGTTTTTGAAAAAAAA  746
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAATTACAACTGGACAAACTGTTTTAAGAAAGGAGTTTTTAAAAAAAAA  346

seq1  TGGGGCCAAAAAAGTTGAGGGTACCTTATCTGTTTGTAATTAAAATGAAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCCAAAAAAGTTGAGGGTACCTTATCTGTTTGTAATTAAAATGAAG  396

seq1  TTGTCTTAAATCTCTATTTCCTAAGATTTTCTTACCTCTTTACTAAAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTAAATCTCTATTTCCTAAGATTTTCTTACCTCTTTACTAAAAAC  446

seq1  CTTATTCTATTACCAAGATTATACTTCAAATCTCACAATACCATTTTTAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTCTATTACCAAGATTATACTTCAAATCTCACAATACCATTTTTAT  496

seq1  TACCTAGAAAAAAGTTGTCTTTATTGTTATTGTTCCACTGTTTCATATAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTAGAAAAAAGTTGTCTTTATTGTTATTGTTCCACTGTTTCATATAT  546

seq1  GATCTAAATCATAGTATGTGTGCTCATACACAGTCTCTCTCTCTCTCTCT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAATCATAGTATGTGTGCTCATACACAGTCTCTCTCTCTCTCTCT  596

seq1  CTGTCTCTGTCTCTCTCTCTCACACACACACATACACACACACACACGTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCTGTCTCTCTCTCTCACACACACACATACACACACACACACGTA  646

seq1  TACTAACCATTATTTTATTTACTTATTTATATTTATTTTTAGATAAATAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAACCATTATTTTATTTACTTATTTATATTTATTTTTAGATAAATAA  696

seq1  AATATTTTAAAATAAAATTTGAAAATCTTATACATGGTGAGTTTAGTTTT  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTTAAAATAAAATTTGAAAATCTTATACATGGTGAGTTTAGTTTT  746

seq1  CGGTCAACTTAAGACAAGTTAAGAGTTATCTGAAAAGAGGAAAACTCAAC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCAACTTAAGACAAGTTAAGAGTTATCTGAAAAGAGGAAAACTCAAC  796

seq1  TGAGAAAATGCTACTAAGACTTTCCTGTAGGCAAGTCTGTAGAACATTTT  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATGCTACTAAGACTTTCCTGTAGGCAAGTCTGTAGAACATTTT  846

seq1  CTTGCTCAATGATGGATGTGGGAGGGTACAGCCCATTGTTGGCAATGCCA  1296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTCAATGATGGATGTGGGAGGGTACAGCCCATTGTTGGCAATGCCA  896

seq1  CTCCTGGTCAGGTAGACCTGGCAGAAATGTAGTTGAAAATGAGGCAGAGT  1346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGTCAGGTAGACCTGGCAGAAATGTAGTTGAAAATGAGGCAGAGT  946

seq1  AACAAGCCAGTGAGTAGTGTTCTTCCATGATCTTTGCTTTAGTCCTGGTC  1396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGCCAGTGAGTAGTGTTCTTCCATGATCTTTGCTTTAGTCCTGGTC  996

seq1  TGCAGATTCTTGCCCTACTTGAATTC  1422
      ||||||||||||||||||||||||||
seq2  TGCAGATTCTTGCCCTACTTGAATTC  1022


seq1: chr14_123994804_123995166
seq2: B6Ng01-172F01.g_65_441

seq1  GAATTCAGACTGCAGTACTTGTGATGACCTTCAGCACATCAAATACGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGACTGCAGTACTTGTGATGACCTTCAGCACATCAAATACGTTA  50

seq1  TTTGATTGGTTGACCTTTCTTTTAGGGATCTGGTCAGTAAGAATACTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGTTGACCTTTCTTTTAGGGATCTGGTCAGTAAGAATACTTCT  100

seq1  TAGGGGAGAGATTGAGGGAGGCAGCTAAAGAACTTCTCAGGCACAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAGAGATTGAGGGAGGCAGCTAAAGAACTTCTCAGGCACAAATTA  150

seq1  GATACTATTGTTCATGGATGAAATTACCTCGCTCTTTTCTGACCAAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTATTGTTCATGGATGAAATTACCTCGCTCTTTTCTGACCAAAGAA  200

seq1  CATAATAGGAACTCTCAGCACATACAAGGCCCTAAAATAGACCACCTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGGAACTCTCAGCACATACAAGGCCCTAAAATAGACCACCTGAT  250

seq1  TCTTCACAAATTCTTGCCAGCTGCTGCCTGAGCACAACCTATCTGCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAAATTCTTGCCAGCTGCTGCCTGAGCACAACCTATCTGCCACT  300

seq1  TCCTACTCCTCAGGCCTCTCCAAAGTACCACCTGCTCTGTGTGTGTGTG-  349
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCCTACTCCTCAGGCCTCTCCAAAGTACCACCTGCTCTGTGTGTGTGTGT  350

seq1  -------------TGTGTGTGTGTGTG  363
                   | ||||||||||||
seq2  ATCTACACACATTTATGTGTGTGTGTG  377


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