BAC Information

Click to search

BAC

Clone NameB6Ng01-172M14
Chromosome14 (Build37)
Map Location 55,282,130 - 55,283,283
singlet/doubletsinglet
Overlap geneAcin1
Upstream geneA430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24
Downstream geneLOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172M14.bB6Ng01-172M14.g
ACCGA001310GA001311
length8791,153
definitionB6Ng01-172M14.b B6Ng01-172M14.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacattggcatgctagtgttagcattatgtggaccgtcctga
ggtctgccactagctgaagcagtctccaggactgtttgtttgtttgttac
tgatttcagcgatcatccagtagtgtattgttcagtctctttgagtttgc
aaattgtctttgattgtttttgctggttatttctagctttgttccagttt
ggtctgtgtttgttttttgtttttgtttttttgtttttgtttttgttttt
gtttttgtttaaactttccattgctgttatcagcactataaccaaaagaa
catcataaccaaaagaaacttgggaggaaaggcttttttctttggtttgg
tttgtggctttcatgtcctgcttacagtccatcattgaaagacggcaagg
caggaacccagaagcaagaactgaggcagagaccatagaagaactcctta
cggacttgctcagtttgctttttcattcaacccaagaccacctgctcagg
ggccacactacccatatcaatcattaattaagaagctgctccaaagactg
gcaaatgccagtctgatagaggcatttttctcaattgatgttccctcttc
acagatgacactaacttgtgttaagtagacacaaaacaccaatctgcaag
caaagtcaaacagaatacaagaagttatttcaattttcctgtatatgttg
aagcttcctttgtgtcctgattacgatgttttagaggaaagttccacaga
gtgctgagaacaatgtgcatcccacagtcccttggaacgttcctatttga
tgtctgctaggtgaattttgatctatggttgttaaacttgtcctgatgac
ccgtcctatgctgagaaatgcgatcttga
gaattcagtagctgatgacctgagttctagccctgacaactacatggcgg
aagaaccaagacttggcctctgacctcatgtacactcgccaatcctccaa
caaacaaacaattaagtattctcaaccgtctgcatttcttgactgtcgtc
cagacagatctctgaatttgatggtgaagacactcacacacctgtaatcc
tagcaagtgcgaggcgaaggcagaaccattagtctgacgctggcctgtaa
gatgctgtctcaaaaacactgaacaatgggaaactccggcctacctgctc
cggctgcaacctctggatcacgtgctgttgctctggctcaggatggctca
gatgcctcccccggacagatgctgagaacgtgggagccttctcctttggt
tcaaggacctgcagctgtggcccagatggagctgcagcctcctgaccaca
agagggatctttggtttcagtgtagctggtgttgctatctctggagactc
cagggctcagagactaaaaacacaaaaggaaacacaaaagggaaattatt
ttatactccaaatatttcggaaagattagtatgagtagatcctgtatata
caggagaccactagattttttccagttttggtgacccagtccagtctggg
tctttttttatcttcttgataaagagatttaagtagcacaaacaggtatt
ggacttgatctatagcctctacctcccaaacgctgcaagtacaagctgat
taggaatagctggtcttcctctagatctctttgtctcgtgtgtgtactgc
catttaagtgaataatctccaactacatattcacaactttactaagtttc
atccagaggcttacactctcaagaagcttgtactgatgaaagatgtattc
agtatgctttgcaatcaaaggggtttcagaacgggcagggaccccagtga
cacttgccctgactctgtaatgaaggaaaagtaacagtggagttcttgca
ggactctttctattctgttagaatcattacagggttattctgagttcaaa
tgacagaagacatggattcctcatactcacttttctgctgctgctgacgc
gtaacggtacgagaatcggcacgctgactggaccttgaagttgacctgga
gcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55282130_55283283
seq2: B6Ng01-172M14.g_65_1217

seq1  GAATTCAGTAGCTGATGACCTGAGTTCTAGCCCTGACAACTACATGGCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTAGCTGATGACCTGAGTTCTAGCCCTGACAACTACATGGCGG  50

seq1  AAGAACCAAGACTTGGCCTCTGACCTCATGTACACTCGCCAATCCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCAAGACTTGGCCTCTGACCTCATGTACACTCGCCAATCCTCCAA  100

seq1  CAAACAAACAATTAAGTATTCTCAACCGTCTGCATTTCTTGACTGTCGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAACAATTAAGTATTCTCAACCGTCTGCATTTCTTGACTGTCGTC  150

seq1  CAGACAGATCTCTGAATTTGATGGTGAAGACACTCACACACCTGTAATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGATCTCTGAATTTGATGGTGAAGACACTCACACACCTGTAATCC  200

seq1  TAGCAAGTGCGAGGCGAAGGCAGAACCATTAGTCTGACGCTGGCCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAGTGCGAGGCGAAGGCAGAACCATTAGTCTGACGCTGGCCTGTAA  250

seq1  GATGCTGTCTCAAAAACACTGAACAATGGGAAACTCCGGCCTACCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGTCTCAAAAACACTGAACAATGGGAAACTCCGGCCTACCTGCTC  300

seq1  CGGCTGCAACCTCTGGATCACGTGCTGTTGCTCTGGCTCAGGATGGCTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCAACCTCTGGATCACGTGCTGTTGCTCTGGCTCAGGATGGCTCA  350

seq1  GATGCCTCCCCCGGACAGATGCTGAGAACGTGGGAGCCTTCTCCTTTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCTCCCCCGGACAGATGCTGAGAACGTGGGAGCCTTCTCCTTTGGT  400

seq1  TCAAGGACCTGCAGCTGTGGCCCAGATGGAGCTGCAGCCTCCTGACCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGACCTGCAGCTGTGGCCCAGATGGAGCTGCAGCCTCCTGACCACA  450

seq1  AGAGGGATCTTTGGTTTCAGTGTAGCTGGTGTTGCTATCTCTGGAGACTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGATCTTTGGTTTCAGTGTAGCTGGTGTTGCTATCTCTGGAGACTC  500

seq1  CAGGGCTCAGAGACTAAAAACACAAAAGGAAACACAAAAGGGAAATTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTCAGAGACTAAAAACACAAAAGGAAACACAAAAGGGAAATTATT  550

seq1  TTATACTCCAAATATTTCGGAAAGATTAGTATGAGTAGATCCTGTATATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACTCCAAATATTTCGGAAAGATTAGTATGAGTAGATCCTGTATATA  600

seq1  CAGGAGACCACTAGATTTTTTCCAGTTTTGGTGACCCAGTCCAGTCTGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGACCACTAGATTTTTTCCAGTTTTGGTGACCCAGTCCAGTCTGGG  650

seq1  TCTTTTTTTATCTTCTTGATAAAGAGATTTAAGTAGCACAAACAGGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTATCTTCTTGATAAAGAGATTTAAGTAGCACAAACAGGTATT  700

seq1  GGACTTGATCTATAGCCTCTACCTCCCAAACGCTGCAAGTACAAGCTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTGATCTATAGCCTCTACCTCCCAAACGCTGCAAGTACAAGCTGAT  750

seq1  TAGGAATAGCTGGTCTTCCTCTAGATCTCTTTGTCTCGTGTGTGTACTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATAGCTGGTCTTCCTCTAGATCTCTTTGTCTCGTGTGTGTACTGC  800

seq1  CATTTAAGTGAATAATCTCCAACTACATATTCAACAACTTTACTAAGTTT  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CATTTAAGTGAATAATCTCCAACTACATATTC-ACAACTTTACTAAGTTT  849

seq1  CATCCAGAGGCTTACACTCTCAAGAAGCTTGTACTGATGAAAGATGTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAGAGGCTTACACTCTCAAGAAGCTTGTACTGATGAAAGATGTATT  899

seq1  CAGTATGCTTTGCAATCAAAGGGG-TTCAGAACGGGCAGGGACCCCAGTG  949
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGTATGCTTTGCAATCAAAGGGGTTTCAGAACGGGCAGGGACCCCAGTG  949

seq1  ACCACTGCCCTGACTCTGTAATGAAGGAAAAGTAACAGTGGAGT--CTGC  997
      ||   |||||||||||||||||||||||||||||||||||||||   |||
seq2  ACACTTGCCCTGACTCTGTAATGAAGGAAAAGTAACAGTGGAGTTCTTGC  999

seq1  AGGACTC-TTCTATTCCTGTTAGAAATCATTACA-GGTTATTCTGAGTTT  1045
      ||||||| ||||||| ||||||| |||||||||| |||||||||||||| 
seq2  AGGACTCTTTCTATT-CTGTTAG-AATCATTACAGGGTTATTCTGAGTT-  1046

seq1  CAAAATGACCAGAGACA-GGATTCTCCATACTCACTTTTCTGCTGCTGCT  1094
        |||||||   ||||| ||||||  ||||||||||||||||||||||| 
seq2  -CAAATGACAGAAGACATGGATTCCTCATACTCACTTTTCTGCTGCTGC-  1094

seq1  TGACGCGGAACGGGAACGAG-ATCGGGAACGTGACCTGGACTCTGAAGTT  1143
      ||||||| ||| || ||||| ||||| |   ||| ||||||  |||||||
seq2  TGACGCGTAAC-GGTACGAGAATCGGCACGCTGA-CTGGACCTTGAAGTT  1142

seq1  GACCTGGAGCC  1154
      |||||||||||
seq2  GACCTGGAGCC  1153