BAC Information

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BAC

Clone NameB6Ng01-172P10
Chromosome14 (Build37)
Map Location 41,801,606 - 41,941,841
singlet/doubletdoublet
Overlap gene5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a
Upstream geneLOC100040439, LOC218945, LOC100040470, LOC382876, Sh2d4b, Tspan14
Downstream geneSftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P10.bB6Ng01-172P10.g
ACCGA001441GA001442
length1,0471,048
definitionB6Ng01-172P10.b B6Ng01-172P10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,940,791 - 41,941,841)(41,801,606 - 41,802,502)
sequence
gaattcacctccacacttaactgagctctgttacttactgactgtagtag
cattgcaacaggctttagtgattgcatttgcaaaataaattattgcattt
gtaaaatagttcttagcaaatcgttgctacaggcattgcacgggatagca
tttttgtgtttggtcccactctttaataaaggactctctcaacaaaggag
gaaaacgaagcattatattggacaggaacagtaaggcctccaagagccct
gggtggacggatagggaacataagaaatcaattacaggggctcatcctct
ctcttagaataagcagaactttcaagaggtcttttccatgggtgttgtgt
gagtcagctctgccctctgctggctgtatgggaaaaagtagccaactaga
cggttgtacaaatgttaaacagaatatgccctcctcttcaggttccacat
ttacagaacactgctttgactcaggaggcctgacagggcaggaggtgggg
ttactttgctgtctaatgaattcctttcctgattctgctattctcttgac
ccggtctaagagaccaaatctttgttcttgtgtgtcttcctttatcgggt
gcccttccggcagagcagtgctgggaacctggagaagcttaatgggaacc
attatccactctggcgtgcctgagacatattgggtactgggtggaccctt
cttgtcttctccatccatctctcagcagcctcacaacaggagctgtcttt
attccctgtaacataagaggaaactgagtctcagtagagttgtgtgactt
tccagagatgatacagcctgcaagttgtgaagcctggatcagacctcatc
ttgcttgggcctctggagctctatttgggtttttctgaagactccactgt
caggatctgtttcacaataacaaagctgtgagccagggttagagtggtcc
ttcaacctacaggtggatccggcctcacttccaagactgtgacatattag
acggagcactgcccttgctcatctttttgtccatggtgcacacagcc
gaattcttttgcaaggttaaaagaaaatgtgtgcttgcagtttcctaaga
atcaaagggctggggtcagtgggatgccgattcataggagaatcaaaggg
gaacatggaataaatgacttaattgttacgtaaataaaaaattgggcagc
ggtctccatgaggtcagctagttgaaagcaatagcagtttttcttttgaa
tttcctgcagcaggagctgagctgtctggagatctctggagagcaaacac
agctcctcgaattttttctttttttttacttaacaggatttctgatttgg
ttggaagatccaataattttttaagcagctttagaatttttactagcagg
gagagctgtctcaaccagagggtttttagaatagcaagaaaaagctgact
agagaaaagtagaacacagagagagagagagagagagagagagagagaga
cagagagacagagacagagagagaggagagagagagagactgagtaaggg
agagcctagtctgagaagccatctcagcagaacctaggccaccagcttgg
actagtttgttgatttcaagtccttcttttcaccacaaccagacacccat
acgctcagaacccctccatgctgaggctggcttttggtgtggctctgcta
gcatcactagcatcgttacaatgtgtacaaggtgaacaagctgatactcc
tgtaccttcatctcttatcaccttggcaagccatcagaattctccattgc
cctatcaacttctgctgttccttatgcaaatcttacaaaccattgagtta
ttgagcaaaactgtgggggtcatccttgacttcttgccctcacatccctt
atctaggatccccttggctggtgctttccatccgctcagcttcttgagaa
actggcagcggccagccttgcctgtgtgttgtctctgccaaccgtatctt
ttgcccttaattccaagccccccatttcccagtgacctccctgcttacca
cctttgattctttctaatagatcttttctcttcaagcagacagaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41940791_41941841
seq2: B6Ng01-172P10.b_41_1087 (reverse)

seq1  GGCTGTGTGCACCATGGACAAAAGAATGAGCAAGGGCAGTGCTTCCGTCT  50
      |||||||||||||||||||||||  ||||||||||||||||| |||||||
seq2  GGCTGTGTGCACCATGGACAAAAAGATGAGCAAGGGCAGTGC-TCCGTCT  49

seq1  AATATGGTTCACAGTCTTGGGAAGTGAGGCCGGATCCACCCTGTAGGTTG  100
      ||||||  |||||||||| ||||||||||||||||||| |||||||||||
seq2  AATATG--TCACAGTCTT-GGAAGTGAGGCCGGATCCA-CCTGTAGGTTG  95

seq1  AAAGGACCACTCTAACCCTGGCTCACAGCTTTGGTTATTGTG-AACAGAT  149
       ||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  -AAGGACCACTCTAACCCTGGCTCACAGCTTT-GTTATTGTGAAACAGAT  143

seq1  CCTG-CAGTGGAGTCTTCAGGAAAACCCAAATAGAGCTCCAGAGGCCC-A  197
      |||| ||||||||||||||| ||||||||||||||||||||||||||| |
seq2  CCTGACAGTGGAGTCTTCAGAAAAACCCAAATAGAGCTCCAGAGGCCCAA  193

seq1  GCAAGATGAGGTCTGATCCAGGCTTCACAACTTGCAGGCTGTATCATCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATGAGGTCTGATCCAGGCTTCACAACTTGCAGGCTGTATCATCTC  243

seq1  TGGAAAGTCACACAACTCTACTGAGACTCAGTTTCCTCTTATGTTACAGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGTCACACAACTCTACTGAGACTCAGTTTCCTCTTATGTTACAGG  293

seq1  GAATAAAGACAGCTCCTGTTGTGAGGCTGCTGAGAGATGGATGGAGAAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAGACAGCTCCTGTTGTGAGGCTGCTGAGAGATGGATGGAGAAGA  343

seq1  CAAGAAGGGTCCACCCAGTACCCAATATGTCTCAGGCACGCCAGAGTGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGGTCCACCCAGTACCCAATATGTCTCAGGCACGCCAGAGTGGA  393

seq1  TAATGGTTCCCATTAAGCTTCTCCAGGTTCCCAGCACTGCTCTGCCGGAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTTCCCATTAAGCTTCTCCAGGTTCCCAGCACTGCTCTGCCGGAA  443

seq1  GGGCACCCGATAAAGGAAGACACACAAGAACAAAGATTTGGTCTCTTAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACCCGATAAAGGAAGACACACAAGAACAAAGATTTGGTCTCTTAGA  493

seq1  CCGGGTCAAGAGAATAGCAGAATCAGGAAAGGAATTCATTAGACAGCAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGTCAAGAGAATAGCAGAATCAGGAAAGGAATTCATTAGACAGCAAA  543

seq1  GTAACCCCACCTCCTGCCCTGTCAGGCCTCCTGAGTCAAAGCAGTGTTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCCCACCTCCTGCCCTGTCAGGCCTCCTGAGTCAAAGCAGTGTTCT  593

seq1  GTAAATGTGGAACCTGAAGAGGAGGGCATATTCTGTTTAACATTTGTACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATGTGGAACCTGAAGAGGAGGGCATATTCTGTTTAACATTTGTACA  643

seq1  ACCGTCTAGTTGGCTACTTTTTCCCATACAGCCAGCAGAGGGCAGAGCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTAGTTGGCTACTTTTTCCCATACAGCCAGCAGAGGGCAGAGCTG  693

seq1  ACTCACACAACACCCATGGAAAAGACCTCTTGAAAGTTCTGCTTATTCTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACACAACACCCATGGAAAAGACCTCTTGAAAGTTCTGCTTATTCTA  743

seq1  AGAGAGAGGATGAGCCCCTGTAATTGATTTCTTATGTTCCCTATCCGTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGGATGAGCCCCTGTAATTGATTTCTTATGTTCCCTATCCGTCC  793

seq1  ACCCAGGGCTCTTGGAGGCCTTACTGTTCCTGTCCAATATAATGCTTCGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGGCTCTTGGAGGCCTTACTGTTCCTGTCCAATATAATGCTTCGT  843

seq1  TTTCCTCCTTTGTTGAGAGAGTCCTTTATTAAAGAGTGGGACCAAACACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCCTTTGTTGAGAGAGTCCTTTATTAAAGAGTGGGACCAAACACA  893

seq1  AAAATGCTATCCCGTGCAATGCCTGTAGCAACGATTTGCTAAGAACTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCTATCCCGTGCAATGCCTGTAGCAACGATTTGCTAAGAACTATT  943

seq1  TTACAAATGCAATAATTTATTTTGCAAATGCAATCACTAAAGCCTGTTGC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAATGCAATAATTTATTTTGCAAATGCAATCACTAAAGCCTGTTGC  993

seq1  AATGCTACTACAGTCAGTAAGTAACAGAGCTCAGTTAAGTGTGGAGGTGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTACTACAGTCAGTAAGTAACAGAGCTCAGTTAAGTGTGGAGGTGA  1043

seq1  ATTC  1051
      ||||
seq2  ATTC  1047

seq1: chr14_41801606_41802502
seq2: B6Ng01-172P10.g_199_1109

seq1  AAAATTGGGCAGCGGTCTCCATGAGGTCAGCTAGTTGAAAGCAATAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGGCAGCGGTCTCCATGAGGTCAGCTAGTTGAAAGCAATAGCAG  50

seq1  TTTTTCTTTTGAATTTCCTGCAGCAGGAGCTGAGCTGTCTGGAGATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGAATTTCCTGCAGCAGGAGCTGAGCTGTCTGGAGATCTCT  100

seq1  GGAGAGCAAACACAGCTCCTCGAATTTTTTCTTTTTTTTTACTTAACAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAAACACAGCTCCTCGAATTTTTTCTTTTTTTTTACTTAACAGG  150

seq1  ATTTCTGATTTGGTTGGAAGATCCAATAATTTTTTAAGCAGCTTTAGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGATTTGGTTGGAAGATCCAATAATTTTTTAAGCAGCTTTAGAAT  200

seq1  TTTTACTAGCAGGGAGAGCTGTCTCAACCAGAGGGTTTTTAGAATAGCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAGCAGGGAGAGCTGTCTCAACCAGAGGGTTTTTAGAATAGCAA  250

seq1  GAAAAAGCTGACTAGAGAAAAGTAGAACACAGAGAGAGAGAGAGAGAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGCTGACTAGAGAAAAGTAGAACACAGAGAGAGAGAGAGAGAGAG  300

seq1  AGAGAGAGAGAGACAGAGAGACAGAGACAGAGAGAGAGGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGACAGAGAGACAGAGACAGAGAGAGAGGAGAGAGAGAGA  350

seq1  GACTGAGTAAGGGAGAGCCTAGTCTGAGAAGCCATCTCAGCAGAACCTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGTAAGGGAGAGCCTAGTCTGAGAAGCCATCTCAGCAGAACCTAG  400

seq1  GCCACCAGCTTGGACTAGCGATTTGATTTCAAGTCCTTCTTTTCACCACA  450
      ||||||||||||||||||    ||||||||||||||||||||||||||||
seq2  GCCACCAGCTTGGACTAGTTTGTTGATTTCAAGTCCTTCTTTTCACCACA  450

seq1  ACCAGACACCCATACGCTCAGAACCCCTCCATGCTGAGGCTGGCTTTTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGACACCCATACGCTCAGAACCCCTCCATGCTGAGGCTGGCTTTTGG  500

seq1  TGTGGCTCTGCTAGCATCACTAGCATCGTTACAATGTGTACAAGGTGAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTCTGCTAGCATCACTAGCATCGTTACAATGTGTACAAGGTGAAC  550

seq1  AAGCTGATACTCCTGTACC-TCATCTCTTATCACCTTGGCAAGCCATCAG  599
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAGCTGATACTCCTGTACCTTCATCTCTTATCACCTTGGCAAGCCATCAG  600

seq1  AATTCTCCATTGCCCTATCAACTTCTGCTGTTCCTTATGCAAATCTTACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCCATTGCCCTATCAACTTCTGCTGTTCCTTATGCAAATCTTACA  650

seq1  AACCA-TGAGTTATTGAGCAAAAACTGT-GGGGTCATCCTTGACTTCTTG  697
      ||||| ||||||||||||| |||||||| |||||||||||||||||||||
seq2  AACCATTGAGTTATTGAGC-AAAACTGTGGGGGTCATCCTTGACTTCTTG  699

seq1  CCCTCACATCCCTTATCTAGGATCCCCTTGGCT-GTGCTTTCCATCCGCT  746
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCCTCACATCCCTTATCTAGGATCCCCTTGGCTGGTGCTTTCCATCCGCT  749

seq1  CAGCTTC-TGAG-AACTGGCAGC-GCCAGCCTTGCCTGTGTGTTGTTCCT  793
      ||||||| |||| |||||||||| ||||||||||||||||||||||  ||
seq2  CAGCTTCTTGAGAAACTGGCAGCGGCCAGCCTTGCCTGTGTGTTGTCTCT  799

seq1  GCC-ACCGTATC-TTTGCCCTAGATCCCA--GCCCCCATTCCCCAGTGAC  839
      ||| |||||||| ||||||||  || |||   |||||||| |||||||||
seq2  GCCAACCGTATCTTTTGCCCTTAATTCCAAGCCCCCCATTTCCCAGTGAC  849

seq1  CTCCCTGCTTACCAGCTTTGAT--CTTCT-ATAGATC-CTTCTCTTCAAG  885
      |||||||||||||| |||||||   |||| |||||||  |||||||||||
seq2  CTCCCTGCTTACCACCTTTGATTCTTTCTAATAGATCTTTTCTCTTCAAG  899

seq1  CAGCCAGAATAT  897
      ||| ||||||||
seq2  CAGACAGAATAT  911