BAC Information

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BAC

Clone NameB6Ng01-172P16
Chromosome14 (Build37)
Map Location 53,547,102 - 53,548,310
singlet/doubletsinglet
Overlap genenone
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850
Downstream geneLOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-172P16.bB6Ng01-172P16.g
ACCGA001451GA001452
length1,1391,211
definitionB6Ng01-172P16.b B6Ng01-172P16.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgaggtgctgcgaagtgccgagagcctccaggactggagaggg
tagtggcagcaggcacaaagtaggactctggtgtgactttaaagtctaag
ggtctctggacattctagctctctaactgtactgaaatgctgatgataac
ttctaaaaaaatcctaaaatctttcttgctctttctaagggtgaaaagct
gctggcctaggggattgacacctgcagcctaacagtggggattaagtaat
gtggcctctgttctacctcagcagcaactgtgcagctctaactttcagct
aataggagtcacaggacagaaaaaagacactttgaaaagtgattatagca
tcagtaatagtgtcaggccttggagcctcaccttgagatggatcccaagt
tggtttccctcagtctcttctcgatttttgtccctgtagttcttttaggc
aggaacaattctgagtcagagtttttgactgtgggacagcaaccccatcc
ctccacttgatgctctgtctctctactggaggtggactctacaaattccc
tctcctgagtgtagggtatttcatctaaggtcccacccttggagtcttga
gagtctctcacttcccaggtcttcagtacattctagagagttgctccacc
tctcaccacacccctgtccccctcccctctaggttacatattcccattca
ttcttctggtcctcagggcttctgatgtataatttaagctttagcaatgt
ttcttttacaaaaagtgggtacccttgtatttggggcatagatgctcgga
ttgaaataccatcttggtagatttttcctctgatgattaagtataaagtc
tattatacttccccttccccattttctttagataattttgggttgaaagt
ctattttattatttattataatggctattccagcatgcttcttgggtcat
gtgctttggaaaactttgttccagccccttacttctgaggtagatctatc
tttatgcctgaaatatgtacttggggtgcagcagaatgatggatctgttt
ttatacattcgtagcctgtgggattttttttttgcttgctggtttttaaa
ctggggggattgattcattggatgtgagagagaactaat
gaattcactgaaataggtggaacattgtcctcttgcaaccgaaagcctat
aagagacatgaaaaaaagccatttctcaggtgtcataactctcaagaaca
aacagagacctaaatatcatttccaagaaaaggaagagttgcttgataaa
tgataaaagtactctgtgatatgagagtggattagtaaatacagtactag
atagaagtaatgttacatatacacacattatatcggaatatatcacacat
acatttatatatgaaaacgtcacatatatacacttgcatgtgaaatatag
tgtatatgatgcattaggtttaaagctaagaaataacctcactagtgtgt
acaaataccattattgatctttcaatattagaacatatttgatatgacat
gttgctgtttcatgtgtctgagtcactcatagggtcagagagcacttaac
tagagtcctgactggctttgaatgcaaccacaaggtggtagtaaatctca
actgctaaggaatatgcggagagctcacttctgtgtatgctgatgattaa
ggcttggggcagaagcaaagcctttttctcagtggctgagtggacgactc
cagagctagaattgttactgagaaacaaccaccctctgataattataagt
caactgccagtcatcaagatctgggaagaacaatgaagacatgtgttgct
agtttatttacatttttctgtctatatctcattaatgagttaatattcta
gggccagagaatcatcagtgggcattcctgagacatctatgggaccactg
ttttactcaggatttctttagttactatagacaaagagaatcctggaagt
gatgatgccacagccctttctctttctctttccatcttttctggataggg
atgagcccaggtcagcatgtgttagagctttcttttcatcctagaggtca
gaagggtccagtgccatcatcaactgcacttatgtagacagtgcctctct
ctgcttctcttgctataagcagaacctggaaagcatcctaagctctcatt
gcaatttgttcagctatggaaagaaaaagagaacctgagattctactggt
acagaaagctgaaccgtctccttacagttacattaacagctgctgactta
gctatgcacttcctggtccatagtcacctggctccacaggaacctgccag
tgctcatctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53547102_53548310
seq2: B6Ng01-172P16.g_66_1276

seq1  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATAGGTGGAACATTGTCCTCTTGCAACCGAAAGCCTAT  50

seq1  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACATGAAAAAAAGCCATTTCTCAGGTGTCATAACTCTCAAGAACA  100

seq1  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACCTAAATATCATTTCCAAGAAAAGGAAGAGTTGCTTGATAAA  150

seq1  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAAAGTACTCTGTGATATGAGAGTGGATTAGTAAATACAGTACTAG  200

seq1  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGTAATGTTACATATACACACATTATATCGGAATATATCACACAT  250

seq1  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTATATATGAAAACGTCACATATATACACTTGCATGTGAAATATAG  300

seq1  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATGATGCATTAGGTTTAAAGCTAAGAAATAACCTCACTAGTGTGT  350

seq1  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACCATTATTGATCTTTCAATATTAGAACATATTTGATATGACAT  400

seq1  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTGTTTCATGTGTCTGAGTCACTCATAGGGTCAGAGAGCACTTAAC  450

seq1  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCCTGACTGGCTTTGAATGCAACCACAAGGTGGTAGTAAATCTCA  500

seq1  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTAAGGAATATGCGGAGAGCTCACTTCTGTGTATGCTGATGATTAA  550

seq1  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGGGCAGAAGCAAAGCCTTTTTCTCAGTGGCTGAGTGGACGACTC  600

seq1  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTAGAATTGTTACTGAGAAACAACCACCCTCTGATAATTATAAGT  650

seq1  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCCAGTCATCAAGATCTGGGAAGAACAATGAAGACATGTGTTGCT  700

seq1  AGTTTATTTACATTTTTCTGTCTATATCTCATTAATGAGTTAATATTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTTACATTTTTCTGTCTATATCTCATTAATGAGTTAATATTCTA  750

seq1  GGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCAGAGAATCATCAGTGGGCATTCCTGAGACATCTATGGGACCACTG  800

seq1  TTTTACTCAGGATTTCTTTAGTTACTATAGACAAAGAGAATCCTGGAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTCAGGATTTCTTTAGTTACTATAGACAAAGAGAATCCTGGAAGT  850

seq1  GATGATGCCACAG-CCTTTCTC-TTCTCTTTCCATC-TTTCTGGATAGGG  897
      ||||||||||||| |||||||| ||||||||||||| |||||||||||||
seq2  GATGATGCCACAGCCCTTTCTCTTTCTCTTTCCATCTTTTCTGGATAGGG  900

seq1  ATGAGCCAAGGTCAGCATGTGTAAGAGCTTTC-TTTCATCCTAAGAGGCC  946
      ||||||| |||||||||||||| ||||||||| ||||||||| ||||| |
seq2  ATGAGCCCAGGTCAGCATGTGTTAGAGCTTTCTTTTCATCCT-AGAGGTC  949

seq1  AGAAGGGTCCAGTGCCATCATCAACTGCACTTATGTAGACAGTGCCTCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGGTCCAGTGCCATCATCAACTGCACTTATGTAGACAGTGCCTCTC  999

seq1  TCTGCTTCCCTTGCTATAAGCAAGAACCTGGAAAGCATCCTAAGCTCTCC  1046
      |||||||| |||||||||||| |||||||||||||||||||||||||| |
seq2  TCTGCTTCTCTTGCTATAAGC-AGAACCTGGAAAGCATCCTAAGCTCT-C  1047

seq1  ATTGGCATTTGTTCAGCTATGGAAAG-AAAAGAGACCCTGAGAATTCTAC  1095
      ||||  |||||||||||||||||||| |||||||| |||||| |||||||
seq2  ATTGCAATTTGTTCAGCTATGGAAAGAAAAAGAGAACCTGAG-ATTCTAC  1096

seq1  TGGACAAGAAAGCTAAACCCTTCTCCCTACACAT-CATAAACAGCCTGCT  1144
      |||   |||||||| || || ||||| ||||  | ||| ||||| |||||
seq2  TGGTACAGAAAGCTGAA-CCGTCTCCTTACAGTTACATTAACAG-CTGCT  1144

seq1  GACTAAGCTATGCACTT-CTGTGCCACAAGTGCACCCTGCTCCACAGGGA  1193
      |||| |||||||||||| |||  |||  ||| ||||  |||||||||| |
seq2  GACTTAGCTATGCACTTCCTGGTCCA-TAGT-CACCTGGCTCCACAGGAA  1192

seq1  CCTG-CAGT--CCATCTGT  1209
      |||| ||||   |||||||
seq2  CCTGCCAGTGCTCATCTGT  1211