BAC Information

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BAC

Clone NameB6Ng01-173K10
Chromosome14 (Build37)
Map Location 12,413,783 - 12,537,451
singlet/doubletdoublet
Overlap genePtprg
Upstream geneFhit, LOC100041974, LOC667030, EG382843, LOC100042427, LOC667059, LOC100041996
Downstream geneLOC100042441, 3830406C13Rik, EG667072, Fezf2, Cadps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K10.bB6Ng01-173K10.g
ACCGA001941GA001942
length1,0431,116
definitionB6Ng01-173K10.b B6Ng01-173K10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(12,413,783 - 12,414,818)(12,536,354 - 12,537,451)
sequence
gaattcttgtcttagcttctaggacattataggccacctttgctggcaga
actatctccatgtttgccttcatggctgtgcgtgtgtcccccacatttcc
acattttataagaataccaatcatcttggctgcaggtcatctcaactcaa
ttcagtttgcagttatttgaggtcagatgatgagccactgacacttaggc
cacaggatgttttgggggacacaactgtcatgacacaagttactagcttt
gtgtctctagactttctaataatattggcctcagccaggcaacctacacg
ctcaaaattagcagcgctctgctgtgtggtggagcctctcagtgctccac
tcttcgcattcttcaccacagcaaacacatgcatttgtgttcctgatggc
tgtagcggtctcattactacaatagaaggaagcacacctggagacaaacg
gacacactgcagaatcttctgcttgtcgtcttcttctgggtctccaaagc
ataatgagtataatctccagtcacaaacaggaaaactcggatttcaatca
agctcagcaggaggcaattacaacaacattcaggatgttattacagaaaa
tggactgcatgtttagggcaattcaaaggattcgtcattggtaatttgga
caggctgatactatacgtgagttgtggccacaaactggctgtgtacctaa
ggatcatattaaacttctgattcttctgtttcttcctttctcatgctggg
attacaagagtgcaccaccacgcccactttatgtgataaaggggatctgc
ccaaggacttcctccatggtacgcaaacactactaattgaggattatctg
caagccctgagctaggcactgactattgacttaatattcttactgtagtt
tgatgatgctgtgggttttgtttgtttgtttgtttgtttgttttttaaat
tccaaatagtaagttgtctttatactggtattttgtagtagaaacccaat
tttcatggttaaaatggtactggattcctgtaagaaatcaaaa
gaattcactgcagacctagggaagaccctggcaaacttatctgaggagca
aagcaaggggaggaatcacatttgtgcagcaagtgaaataaagaggcctg
ctggcagcatccgtgggactgtggaactgatcaataatcttattagcgca
caactaggcatgcccatggtaaattctttttttaatagcatttattgctt
tttctgattatagaagccataaatatttgcagtcgaagcatacgcaggca
aagtacattaataagcacagtacattaactagatgggtaagtacataaaa
agtataaacaagaaaataaaaataactataaccactgttcaaattttggt
gtattttctcctgtgtatcaataatcaataggcctgggtttacagaatgt
ggaagtgtttcaaagggagttcatactaagctgggcactgtagtgatggc
agcctaaggccctttggaggcacaaacagaagcatctggaatggagagca
acctgggccactcagccatgcagtgcttcaaaaaggtgtcagaactaact
taaaaaaatgggaaagaagatgaaaatattgctcatcttcaggaagtgtg
aagtatcagcagtaaagggcgatctaccttcacaacaggtcaactcaggt
gagtgtcttaacatggaagtccagcagaagatgccaaaaactgagtgcca
ataaacaggctacttcagccatcaaatacaagcccacttcttagatcagt
ggttatttaaaagatagtcatttggcagcaggttgatggtggggcaggcc
tttagccccaacagaaaaggcagagacaggcagatttctgtgaattcaag
gccagccctagtctacagagaagttccaagagagccgaactgtttgtctt
caataacaacaccataataataaattgtcatttggctagggaagatggct
tgtcacacagcatgaggccctggatggaatatcctgaaccggccataatg
ccagggcaccagtgtctttacgcccttgcagtcaaatgcagaggcgaaag
ttctcaggtcaacggaaagccttggttcacttggtctcagccactctcag
tctatcagttgagttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_12413783_12414818
seq2: B6Ng01-173K10.b_43_1085

seq1  GAATTCTTGTCTTAGCTTCTAGGACATTATAGGCCACCTTTGCTGGCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGTCTTAGCTTCTAGGACATTATAGGCCACCTTTGCTGGCAGA  50

seq1  ACTATCTCCATGTTTGCCTTCATGGCTGTGCGTGTGTCCCCCACATTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTCCATGTTTGCCTTCATGGCTGTGCGTGTGTCCCCCACATTTCC  100

seq1  ACATTTTATAAGAATACCAATCATCTTGGCTGCAGGTCATCTCAACTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATAAGAATACCAATCATCTTGGCTGCAGGTCATCTCAACTCAA  150

seq1  TTCAGTTTGCAGTTATTTGAGGTCAGATGATGAGCCACTGACACTTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTTGCAGTTATTTGAGGTCAGATGATGAGCCACTGACACTTAGGC  200

seq1  CACAGGATGTTTTGGGGGACACAACTGTCATGACACAAGTTACTAGCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGATGTTTTGGGGGACACAACTGTCATGACACAAGTTACTAGCTTT  250

seq1  GTGTCTCTAGACTTTCTAATAATATTGGCCTCAGCCAGGCAACCTACACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTCTAGACTTTCTAATAATATTGGCCTCAGCCAGGCAACCTACACG  300

seq1  CTCAAAATTAGCAGCGCTCTGCTGTGTGGTGGAGCCTCTCAGTGCTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTAGCAGCGCTCTGCTGTGTGGTGGAGCCTCTCAGTGCTCCAC  350

seq1  TCTTCGCATTCTTCACCACAGCAAACACATGCATTTGTGTTCCTGATGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGCATTCTTCACCACAGCAAACACATGCATTTGTGTTCCTGATGGC  400

seq1  TGTAGCGGTCTCATTACTACAATAGAAGGAAGCACACCTGGAGACAAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCGGTCTCATTACTACAATAGAAGGAAGCACACCTGGAGACAAACG  450

seq1  GACACACTGCAGAATCTTCTGCTTGTCGTCTTCTTCTGGGTCTCCAAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACACTGCAGAATCTTCTGCTTGTCGTCTTCTTCTGGGTCTCCAAAGC  500

seq1  ATAATGAGTATAATCTCCAGTCACAAACAGGAAAACTCGGATTTCAATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAGTATAATCTCCAGTCACAAACAGGAAAACTCGGATTTCAATCA  550

seq1  AGCTCAGCAGGAGGCAATTACAACAACATTCAGGATGTTATTACAGAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGGAGGCAATTACAACAACATTCAGGATGTTATTACAGAAAA  600

seq1  TGGACTGCATGTTTAGGGCAATTCAAAGGATTCGTCATTGGTAATTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTGCATGTTTAGGGCAATTCAAAGGATTCGTCATTGGTAATTTGGA  650

seq1  CAGGCTGATACTATACGTGAGTTGTGGCCACAAACTGGCTGTGTACCTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGATACTATACGTGAGTTGTGGCCACAAACTGGCTGTGTACCTAA  700

seq1  GGATCATATTAAACTTCTGATTCTTCTGTTTCTTCCTTTCTCATGCTGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATATTAAACTTCTGATTCTTCTGTTTCTTCCTTTCTCATGCTGGG  750

seq1  ATTACAAGAGTGCACCACCACGCCCACTTTATGTGATAAAGGGGATCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAGAGTGCACCACCACGCCCACTTTATGTGATAAAGGGGATCTGC  800

seq1  CCAAGGACTTCCTCCATGGTACGCAAACACTACTAATTGAGGA-TATCTG  849
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CCAAGGACTTCCTCCATGGTACGCAAACACTACTAATTGAGGATTATCTG  850

seq1  CAAG-CCTGAGCTAGGCACTGACTATTGACTTAATATTCTTACTGTAGTT  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTGAGCTAGGCACTGACTATTGACTTAATATTCTTACTGTAGTT  900

seq1  TGATGATGCTGTGGTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTTAAA  948
      |||||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  TGATGATGCTGTGGGTTTTGTTTGTTTGTTTGTTTGTTTG-TTTTTTAAA  949

seq1  TTCCAAATAGT-AGTTGTCTTTAATACT-GTATTTGGTAGTAG-AACCCA  995
      ||||||||||| |||||||||| ||||| |||||| ||||||| ||||||
seq2  TTCCAAATAGTAAGTTGTCTTT-ATACTGGTATTTTGTAGTAGAAACCCA  998

seq1  --TTTCATGGTTAAAATTGTACTGGA-TACTGTAAG-AATCAAAA  1036
        ||||||||||||||| |||||||| | ||||||| ||||||||
seq2  ATTTTCATGGTTAAAATGGTACTGGATTCCTGTAAGAAATCAAAA  1043

seq1: chr14_12536354_12537451
seq2: B6Ng01-173K10.g_70_1185 (reverse)

seq1  GAACTC-ACTGATTTGGCTGAG-TTGGCTGA---CCAGTGAACCAGGGCT  45
      |||||| ||||| | | |||||  |||||||   | ||||||||| ||||
seq2  GAACTCAACTGA-TAGACTGAGAGTGGCTGAGACCAAGTGAACCAAGGCT  49

seq1  CTCCG-TGACCT--GTACTTTCGCCTCTGCATTTGGACTGCA--GGCGT-  89
       |||| ||||||  | |||||||||||||||||| |||||||  ||||| 
seq2  TTCCGTTGACCTGAGAACTTTCGCCTCTGCATTT-GACTGCAAGGGCGTA  98

seq1  AAGCCACT-GTG-CCTGGCATTATGGCC-GTTCAGGATA-TCCATCCAGG  135
      ||| |||| ||| ||||||||||||||| |||||||||| ||||||||||
seq2  AAGACACTGGTGCCCTGGCATTATGGCCGGTTCAGGATATTCCATCCAGG  148

seq1  GCCTCATGCTTGTGTGACAAGCCATCTT-CCTAGCCAAATGACAATTTAT  184
      ||||||||| |||||||||||||||||| |||||||||||||||||||||
seq2  GCCTCATGC-TGTGTGACAAGCCATCTTCCCTAGCCAAATGACAATTTAT  197

seq1  TATTATTGTTGTTGTTATTG-AGAC-AACAGTTCGGCTCTCTTGGAACTT  232
      ||||| || ||||||||||| |||| ||||||||||||||||||||||||
seq2  TATTA-TGGTGTTGTTATTGAAGACAAACAGTTCGGCTCTCTTGGAACTT  246

seq1  CTCTGTAGACTA-GGCTGGCCTTGAATTCACAGAAATCTGCCTGTCTCTG  281
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGACTAGGGCTGGCCTTGAATTCACAGAAATCTGCCTGTCTCTG  296

seq1  CCTTTTCTGTTGGGGCTAAAGGCCTGCCCCACCATCAACCTGCTGCCAAA  331
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTGTTGGGGCTAAAGGCCTGCCCCACCATCAACCTGCTGCCAAA  346

seq1  TGACTATCTTTTAAATAACCACTGATCTAAGAAGT-GGCTTGTA-TTGAT  379
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TGACTATCTTTTAAATAACCACTGATCTAAGAAGTGGGCTTGTATTTGAT  396

seq1  GGCTGAAGTAGCCTGTTTATTGGCACTCAG-TTTTGGCATCTTCTGCTGG  428
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCTGAAGTAGCCTGTTTATTGGCACTCAGTTTTTGGCATCTTCTGCTGG  446

seq1  ACTTCCATGTTAAGACACTCACCTGAGTTGACCTGTTGTGAAGGTAGATC  478
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCATGTTAAGACACTCACCTGAGTTGACCTGTTGTGAAGGTAGATC  496

seq1  GCCCTTTACTGCTGATACTTCACACTTCCTGAAGATGAGCAATATTTTCA  528
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTACTGCTGATACTTCACACTTCCTGAAGATGAGCAATATTTTCA  546

seq1  TCTTCTTTCCCATTTTTTTAAGTTAGTTCTGACACCTTTTTGAAGCACTG  578
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTTCCCATTTTTTTAAGTTAGTTCTGACACCTTTTTGAAGCACTG  596

seq1  CATGGCTGAGTGGCCCAGGTTGCTCTCCATTCCAGATGCTTCTGTTTGTG  628
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCTGAGTGGCCCAGGTTGCTCTCCATTCCAGATGCTTCTGTTTGTG  646

seq1  CCTCCAAAGGGCCTTAGGCTGCCATCACTACAGTGCCCAGCTTAGTATGA  678
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAAAGGGCCTTAGGCTGCCATCACTACAGTGCCCAGCTTAGTATGA  696

seq1  ACTCCCTTTGAAACACTTCCACATTCTGTAAACCCAGGCCTATTGATTAT  728
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTTTGAAACACTTCCACATTCTGTAAACCCAGGCCTATTGATTAT  746

seq1  TGATACACAGGAGAAAATACACCAAAATTTGAACAGTGGTTATAGTTATT  778
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACAGGAGAAAATACACCAAAATTTGAACAGTGGTTATAGTTATT  796

seq1  TTTATTTTCTTGTTTATACTTTTTATGTACTTACCCATCTAGTTAATGTA  828
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTTGTTTATACTTTTTATGTACTTACCCATCTAGTTAATGTA  846

seq1  CTGTGCTTATTAATGTACTTTGCCTGCGTATGCTTCGACTGCAAATATTT  878
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCTTATTAATGTACTTTGCCTGCGTATGCTTCGACTGCAAATATTT  896

seq1  ATGGCTTCTATAATCAGAAAAAGCAATAAATGCTATTAAAAAAAGAATTT  928
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTATAATCAGAAAAAGCAATAAATGCTATTAAAAAAAGAATTT  946

seq1  ACCATGGGCATGCCTAGTTGTGCGCTAATAAGATTATTGATCAGTTCCAC  978
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGGCATGCCTAGTTGTGCGCTAATAAGATTATTGATCAGTTCCAC  996

seq1  AGTCCCACGGATGCTGCCAGCAGGCCTCTTTATTTCACTTGCTGCACAAA  1028
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCACGGATGCTGCCAGCAGGCCTCTTTATTTCACTTGCTGCACAAA  1046

seq1  TGTGATTCCTCCCCTTGCTTTGCTCCTCAGATAAGTTTGCCAGGGTCTTC  1078
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATTCCTCCCCTTGCTTTGCTCCTCAGATAAGTTTGCCAGGGTCTTC  1096

seq1  CCTAGGTCTGCAGTGAATTC  1098
      ||||||||||||||||||||
seq2  CCTAGGTCTGCAGTGAATTC  1116