BAC Information

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BAC

Clone NameB6Ng01-173K19
Chromosome14 (Build37)
Map Location 45,104,704 - 45,260,503
singlet/doubletdoublet
Overlap geneBC061237, LOC434476, EG666707, LOC100042570, LOC666723, LOC673290, EG666725
Upstream geneLOC545039, LOC100041227, LOC100041235, LOC100042342, LOC666322, EG666556, EG666561, LOC676304, Rbmxrtp, LOC673132, LOC100041300, LOC624717, LOC672977, EG666590, LOC100041327, EG623592, Ear1, Ear-ps12, Ear-ps9, Ear-ps8, Ang-ps3, Ear10, EG666451, LOC672161, Ang3, Ear-ps7, Ear-ps10, EG630952, EG666621, LOC100041356, LOC100041364, LOC100041371, LOC100041376, Ear-ps2, Ang-ps1, Ear2, LOC100041393, LOC100041422, EG666638, 4930503E14Rik, EG666647, EG624862, EG666660, EG666667, EG546250, EG666675, LOC100041494, LOC100041497, EG666678, LOC676402
Downstream geneEG624966, EG666744, Ptgdr, Ptger2, LOC100041591, 5730420B22Rik, LOC100041611, 6330416L11Rik, Ero1l, Psmc6, Styx, Gnpnat1, Plekhc1, EG382884, Ddhd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-173K19.bB6Ng01-173K19.g
ACCGA001959GA001960
length1,1541,055
definitionB6Ng01-173K19.b B6Ng01-173K19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,104,704 - 45,105,876)(45,259,441 - 45,260,503)
sequence
gaattctttgcaaacttctatgatagtgaaagactgtggaaatccctagg
aattggattatgaagtaagacttagtacaacgtctatggacacataaatc
aaatattgaaaaagcttagaagacagataggacaaaatatattgagtcca
actgatgttggggagtcaattaacaattcagagaacattggctctgaaca
atggcctccctgctcctttcctacttgaaaggaaaggagcagggaggaga
ggtacttggacaggtcttgaagttagcctttgctaaaaatgagtaaaaaa
aaatcaatttttcacagtcggtgcattcatacaggaaaggaggagatgac
tcagccactaaaggtcctgagaggacacactgagctggcattcatgaact
ctccattgttcagtaagaacaactgcacttgattaagatgcttacatgac
ctttacacccagtgcttccctctctgctactatctgtcatggtggagggt
tttctcagggttttctcttctgagctgtcaggacactggcaggcttttcc
tctcacctgttatggtctcaacaaagtctcccctcaccagccagaaaatc
tcttcttgatatttgagcctcattgtgaggtagcaagagagtggaaacaa
tctatgccagtacagatgagacctttggaagggaatgtgggttagataat
gtcatcagagtaaattcttgccttttgcaaaacccttctaaacaaatggt
tccctaggttagtttcccaaccagagagcaagacagcatgctgcttatgt
aattgcaatatggtgtgtgggagacaggctgctgattttagatagtctta
agtagccagggctggtcttgtacaaaacccactaatgtggtcaggttgac
tttggatcccaaaagccacgctaaatattgagtatcatatttagaacact
tcttcattctaaaattagtgtttcaagtctaaaatagttacctttacctt
cttcttaagtagtatgtaataatgctatcggtgtgtaccatgattaattt
ttcacaccaagaaatatatgtgcctttctttttcccagactaaattgtta
atgaaacaatgatgaacttctgtccaagtccctctctaagaaaattcctt
tgat
gaattctctgaaaagctcttttgctacatgatttacagttacaccttttc
agataatccatctgaatctctaaaaggtattctattgctgctacactgag
gatgaaatttccagggtttggacatgcctcaactgcctcttgttccaggc
ctgcttccctcagcccctagctctctggcctcacaaaaatcaatagtcta
ttattcattaagagactcttggagtctcctgacaaacacagccaaaggat
gacttccatgccttatattgtgattttttattcgatagcctacagctctt
gcggaagaatttttatccatttagcataactctctttctctctatctctg
tctctctttctctctgtctgtctgtctgtctgtctctgtctctctctctc
cgcgtgtggctgtgtgtgactgtgtatgtgtgtgttatacaattttctta
tatatgtaaattaatatggcctcttaagtctatttcaaacaatttagtgt
tagttattcctacgaattccctctccttctgtattatccccttcatccat
ctcaaataagcctctctctgttttatccattttccttttcatatcacctt
atcacctggatcctgctagcctattctactcccatagtctccatttatat
ttttgttttctatggttactgcagattaataccaattgaataatagtgag
ctattttgcagtatgctgctctctccagaacacaggtcataaagagaaaa
gatagagaaacatgagaattaaatgatattacacatcaaatggacggata
cgtgcagaatattctactcaagtaccaaagaataaacattctactcaaca
atccagggactcttctctaaaatagagaagtttgtgggccacaaacaaat
tttgagcaaaccggaataagtccatataccctattgcaacacagtagagt
aacatttaaaaccacaggcaaacaatctctaataagaacaaaactcatgg
tgattaaacactcagtgctggatatgaatatataagatggaataaaaaag
tagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_45104704_45105876
seq2: B6Ng01-173K19.b_45_1198

seq1  GAATTCTTTGCAAACTTCTATGATAGTGAAAGACTGTGGAAATCCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCAAACTTCTATGATAGTGAAAGACTGTGGAAATCCCTAGG  50

seq1  AATTGGATTATGAAGTAAGACTTAGTACAACGTCTATGGACACATAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGATTATGAAGTAAGACTTAGTACAACGTCTATGGACACATAAATC  100

seq1  AAATATTGAAAAAGCTTAGAAGACAGATAGGACAAAATATATTGAGTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGAAAAAGCTTAGAAGACAGATAGGACAAAATATATTGAGTCCA  150

seq1  ACTGATGTTGGGGAGTCAATTAACAATTCAGAGAACATTGGCTCTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGTTGGGGAGTCAATTAACAATTCAGAGAACATTGGCTCTGAACA  200

seq1  ATGGCCTCCCTGCTCCTTTCCTACTTGAAAGGAAAGGAGCAGGGAGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCCCTGCTCCTTTCCTACTTGAAAGGAAAGGAGCAGGGAGGAGA  250

seq1  GGTACTTGGACAGGTCTTGAAGTTAGCCTTTGCTAAAAATGAGTAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTTGGACAGGTCTTGAAGTTAGCCTTTGCTAAAAATGAGTAAAAAA  300

seq1  AAATCAATTTTTCACAGTCGGTGCATTCATACAGGAAAGGAGGAGATGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATTTTTCACAGTCGGTGCATTCATACAGGAAAGGAGGAGATGAC  350

seq1  TCAGCCACTAAAGGTCCTGAGAGGACACACTGAGCTGGCATTCATGAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCACTAAAGGTCCTGAGAGGACACACTGAGCTGGCATTCATGAACT  400

seq1  CTCCATTGTTCAGTAAGAACAACTGCACTTGATTAAGATGCTTACATGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATTGTTCAGTAAGAACAACTGCACTTGATTAAGATGCTTACATGAC  450

seq1  CTTTACACCCAGTGCTTCCCTCTCTGCTACTATCTGTCATGGTGGAGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACACCCAGTGCTTCCCTCTCTGCTACTATCTGTCATGGTGGAGGGT  500

seq1  TTTCTCAGGGTTTTCTCTTCTGAGCTGTCAGGACACTGGCAGGCTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCAGGGTTTTCTCTTCTGAGCTGTCAGGACACTGGCAGGCTTTTCC  550

seq1  TCTCACCTGTTATGGTCTCAACAAAGTCTCCCCTCACCAGCCAGAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTGTTATGGTCTCAACAAAGTCTCCCCTCACCAGCCAGAAAATC  600

seq1  TCTTCTTGATATTTGAGCCTCATTGTGAGGTAGCAAGAGAGTGGAAACAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTGATATTTGAGCCTCATTGTGAGGTAGCAAGAGAGTGGAAACAA  650

seq1  TCTATGCCAGTACAGATGAGACCTTTGGAAGGGAATGTGGGTTAGATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGCCAGTACAGATGAGACCTTTGGAAGGGAATGTGGGTTAGATAAT  700

seq1  GTCATCAGAGTAAATTCTTGCCTTTTGCAAAACCCTTCTAAACAAATGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCAGAGTAAATTCTTGCCTTTTGCAAAACCCTTCTAAACAAATGGT  750

seq1  TCCCTAGGTTAGTTTCCCAACCAGAGAGCAAGACAGCATGCTGCTTATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGGTTAGTTTCCCAACCAGAGAGCAAGACAGCATGCTGCTTATGT  800

seq1  AATTGCAATATGGTGTGTGGGAGACAGGCTGCTGATTTTAGATAGTCTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAATATGGTGTGTGGGAGACAGGCTGCTGATTTTAGATAGTCTTA  850

seq1  AGTAGCCAGGGCTGGTCTTGTACAAAACCCACTAATGTGGTCAAGGTTGA  900
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGTAGCCAGGGCTGGTCTTGTACAAAACCCACTAATGTGGTC-AGGTTGA  899

seq1  CTTTGGATCCCAAAAGCCACGCTAAATATTTGAGTATCAATATTTAAGAA  950
      |||||||||||||||||||||||||||| ||||||||| |||||| ||||
seq2  CTTTGGATCCCAAAAGCCACGCTAAATA-TTGAGTATC-ATATTT-AGAA  946

seq1  CCACTTCTTCATTTCTAAAATTAGTGTTTCAAGTCTAAAATAGTTTACCT  1000
       |||||||||| ||||||||||||||||||||||||||||||| ||||||
seq2  -CACTTCTTCA-TTCTAAAATTAGTGTTTCAAGTCTAAAATAG-TTACCT  993

seq1  TTACCTTC-TCTTAAGTTAGTATGTAAATAATGGTATCGTTGTGTAACAA  1049
      |||||||| ||||||| |||||||| ||||||| ||||| ||||| || |
seq2  TTACCTTCTTCTTAAG-TAGTATGT-AATAATGCTATCGGTGTGT-ACCA  1040

seq1  TGATTTAATTTTTCACACCAAGAAATATAATGTTGCTTTCTTTTTCTCAG  1099
      ||| |||||||||||||||||||||||| ||||  ||||||||||| |||
seq2  TGA-TTAATTTTTCACACCAAGAAATAT-ATGTGCCTTTCTTTTTCCCAG  1088

seq1  ACCTAAATGGTTAAATGGAACCAATGATGGAAATCTTCTGTCAAAGTTCC  1149
      | |||||| |||||   ||| ||||||||   | |||||||| ||| |||
seq2  A-CTAAATTGTTAA--TGAAACAATGATG---AACTTCTGTCCAAG-TCC  1131

seq1  CTCTCTAAAGAAAATTCTTTTGAT  1173
      |||||| |||||||||| ||||||
seq2  CTCTCT-AAGAAAATTCCTTTGAT  1154

seq1: chr14_45259441_45260503
seq2: B6Ng01-173K19.g_69_1123 (reverse)

seq1  TTCTACTTTTTTTTTATTTCATCTTTAATATATCATTATCCAGCACTGAG  50
      ||||||   ||||||||| ||||||  ||||||   ||||||||||||||
seq2  TTCTAC---TTTTTTATTCCATCTT--ATATATTCATATCCAGCACTGAG  45

seq1  TTGTTTAATCACAATGAGTTTTGTTCTTATTAGAGATTTGTTTGCTGTTG  100
       ||||||||||| ||||||||||||||||||||||| ||||||||   ||
seq2  -TGTTTAATCACCATGAGTTTTGTTCTTATTAGAGA-TTGTTTGCCTGTG  93

seq1  GTTTTAAATGTTACTCTACTGTGTTGCAATAGGGTATATGGACTTATTTC  150
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTTTTAAATGTTACTCTACTGTGTTGCAATAGGGTATATGGACTTA-TTC  142

seq1  CGTTTTGCTCAAATTTGTTTTGTGGCCCACAAACTTCTCTATTTTAGAGA  200
      || |||||||||| ||  ||||||||||||||||||||||||||||||||
seq2  CGGTTTGCTCAAAATTTGTTTGTGGCCCACAAACTTCTCTATTTTAGAGA  192

seq1  AGAGTCCCTGGATTGTTGAGTAGAATGTTTATTCTTTGGTACTTGAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCCTGGATTGTTGAGTAGAATGTTTATTCTTTGGTACTTGAGTAG  242

seq1  AATATTCTGCACGTATCCGTCCATTTGATGTGTAATATCATTTAATTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCTGCACGTATCCGTCCATTTGATGTGTAATATCATTTAATTCTC  292

seq1  ATGTTTCTCTATCTTTTCTCTTTATGACCTGTGTTCTGGAGAGAGCAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTCTATCTTTTCTCTTTATGACCTGTGTTCTGGAGAGAGCAGCA  342

seq1  TACTGCAAAATAGCTCACTATTATTCAATTGGTATTAATCTGCAGTAACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCAAAATAGCTCACTATTATTCAATTGGTATTAATCTGCAGTAACC  392

seq1  ATAGAAAACAAAAATATAAATGGAGACTATGGGAGTAGAATAGGCTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAACAAAAATATAAATGGAGACTATGGGAGTAGAATAGGCTAGCA  442

seq1  GGATCCAGGTGATAAGGTGATATGAAAAGGAAAATGGATAAAACAGAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCAGGTGATAAGGTGATATGAAAAGGAAAATGGATAAAACAGAGAG  492

seq1  AGGCTTATTTGAGATGGATGAAGGGGATAATACAGAAGGAGAGGGAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTATTTGAGATGGATGAAGGGGATAATACAGAAGGAGAGGGAATTC  542

seq1  GTAGGAATAACTAACACTAAATTGTTTGAAATAGACTTAAGAGGCCATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAATAACTAACACTAAATTGTTTGAAATAGACTTAAGAGGCCATAT  592

seq1  TAATTTACATATATAAGAAAATTGTATAACACACACATACACAGTCACAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTACATATATAAGAAAATTGTATAACACACACATACACAGTCACAC  642

seq1  ACAGCCACACGCGGAGAGAGAGAGACAGAGACAGACAGACAGACAGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCACACGCGGAGAGAGAGAGACAGAGACAGACAGACAGACAGACAG  692

seq1  AGAGAAAGAGAGACAGAGATAGAGAGAAAGAGAGTTATGCTAAATGGATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGAGAGACAGAGATAGAGAGAAAGAGAGTTATGCTAAATGGATA  742

seq1  AAAATTCTTCCGCAAGAGCTGTAGGCTATCGAATAAAAAATCACAATATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCTTCCGCAAGAGCTGTAGGCTATCGAATAAAAAATCACAATATA  792

seq1  AGGCATGGAAGTCATCCTTTGGCTGTGTTTGTCAGGAGACTCCAAGAGTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGGAAGTCATCCTTTGGCTGTGTTTGTCAGGAGACTCCAAGAGTC  842

seq1  TCTTAATGAATAATAGACTATTGATTTTTGTGAGGCCAGAGAGCTAGGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATGAATAATAGACTATTGATTTTTGTGAGGCCAGAGAGCTAGGGG  892

seq1  CTGAGGGAAGCAGGCCTGGAACAAGAGGCAGTTGAGGCATGTCCAAACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGAAGCAGGCCTGGAACAAGAGGCAGTTGAGGCATGTCCAAACCC  942

seq1  TGGAAATTTCATCCTCAGTGTAGCAGCAATAGAATACCTTTTAGAGATTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTTCATCCTCAGTGTAGCAGCAATAGAATACCTTTTAGAGATTC  992

seq1  AGATGGATTATCTGAAAAGGTGTAACTGTAAATCATGTAGCAAAAGAGCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGATTATCTGAAAAGGTGTAACTGTAAATCATGTAGCAAAAGAGCT  1042

seq1  TTTCAGAGAATTC  1063
      |||||||||||||
seq2  TTTCAGAGAATTC  1055