BAC Information

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BAC

Clone NameB6Ng01-174H18
Chromosome14 (Build37)
Map Location 18,311,904 - 18,473,760
singlet/doubletdoublet
Overlap genenone
Upstream geneRarb, Tpi-rs9
Downstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963, Ube2e2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-174H18.bB6Ng01-174H18.g
ACCGA002551GA002552
length1,091678
definitionB6Ng01-174H18.b B6Ng01-174H18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,473,038 - 18,473,760)(18,311,904 - 18,312,579)
sequence
gaattctatcatagtcagagaaatcaggcaagctatcccaagatgaaatg
gaaacaatcacagtacctttatgttaattcaattcattaaaagaaaactg
gggtttgaatcaaaagtatcttttgacacccttcccccagtgctatacac
atttgagaagataatagtcaaaactgcattattacaaacaacctgttttg
tacaagctagcagtccaaataagaagcatccccttcagcctgcatttgaa
tgcttcgtgccactgttggaaaggtttagaagctgtgccttgctagagga
agtacatcactgaaggtgggctttgagggcttacagcttcactccatttc
cagtttgcatcttggttgcagcaaaggatatgcttcctcagttcctgctc
ttgctaccgtgcctccctaccactataggctcctatcccttctaaaactg
taagccagaaaagctctttcttctgtaggttctgatggcatttcataaca
gcaatgggaaagtaactcacacagaaattggtaccactgactggattgat
actgtaaagaacccgtgttgagagaaatgtggaaatcctgtgcccataga
ctcatgtgtgtgaatgattgagccataaggaatgacactattatgaggtg
tggtcttgctggagtaggtgtggccttattggaggaatatgtcactatgg
aagcaggctttgaggtcttgtatgtttaagctttgcccagtgaggcacac
agtcttctgctgcttgtggatcaagctgtagaattctcaaatactttttc
agtaccatatctgtctgcatgattttccctgtttcctgccatggcaatta
tgaaccaaacaccctttggtctttacagcaataaactttaactaagacaa
atctgaccatgttgtatttgggaaggaatgtagaagacttgaactagaaa
attagttgaatgctataagctgagttctttctagtagaagtctgggataa
cagtatgaggcccagctccagaaagttccagaagggaagaaaaggattca
catctaggccagagcctagtcagataatatctttgggccag
gaattcacattgataatttattagacgcattgtggtactactgcagaaga
caaagcagcagagagaagttgtctgcacagacattctaagagcagatttt
taagacagagatgcacctggaaagcaggcactgtttcaccaccatgattg
tttagctattattggacaagataattccaacttttctgagggagactgac
aaacatctcttaattcctgaccagccaaaataaacaattccactggagtc
taacttggtgaactaatgaatttgattggggatgtctataggagcacaca
tgtatccccttgttttccctttgttgtcgaattgctctggctagaatttc
aaatactatattgaataggtagcgagaaagtgagcatctttgtctagttc
ctgattttagtgggattgcttcaagtttctctccatttagtttgatgttg
gctactggtttgctatagattgcttttattatgtttacatatgggccttg
aattcctgatctttccaagacttttatcatgaatgggtgttggattttgt
caaatggtttctctgcatctaaagagaggataatgtggattttgtctttg
agttttgtttttatagtggattactttgatggatttccatatatttaaac
catcgctgcatccctgaaatgaagccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_18473038_18473760
seq2: B6Ng01-174H18.b_413_1140 (reverse)

seq1  CTTGCCC-AAGATATTATCTGACTAGCCTCTGGCTTAGATGTTGAATCC-  48
      || |||| |||||||||||||||||| ||||||| |||||| ||||||| 
seq2  CTGGCCCAAAGATATTATCTGACTAGGCTCTGGCCTAGATG-TGAATCCT  49

seq1  TTTCTTCCC-TCTGAAAC-TTCTTGAGCTGGGCCTCACTACTGTT-TCCC  95
      ||||||||| |||| ||| |||| ||||||||||||| ||||||| ||||
seq2  TTTCTTCCCTTCTGGAACTTTCTGGAGCTGGGCCTCA-TACTGTTATCCC  98

seq1  AGACTTCTACTAGAAAG-ACTCAGCTTATAGCATTCAACTAATTTTCTAG  144
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGACTTCTACTAGAAAGAACTCAGCTTATAGCATTCAACTAATTTTCTAG  148

seq1  TCCAAGTCTTCTACATTCC-TCCCAAATACAACATGGTCAGATTTGTCTT  193
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTCAAGTCTTCTACATTCCTTCCCAAATACAACATGGTCAGATTTGTCTT  198

seq1  AGTTAAAGTTTTATTGCTGTAAAGACCAAAGGGTGTTTGGTTCATAATTG  243
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAAG-TTTATTGCTGTAAAGACCAAAGGGTGTTTGGTTCATAATTG  247

seq1  CCATGGCAGGAAACAGGG-AAATCATGCAGACAGATATGGTACTGAAAAA  292
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCATGGCAGGAAACAGGGAAAATCATGCAGACAGATATGGTACTGAAAAA  297

seq1  GTATTTGAGAATTCTACAGCTTGATCCACAAGCAGCAGAAGACTGTGTGC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGAGAATTCTACAGCTTGATCCACAAGCAGCAGAAGACTGTGTGC  347

seq1  CTCACTGGGCAAAGCTTAAACATACAAGACCTCAAAGCCTGCTTCCATAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGGCAAAGCTTAAACATACAAGACCTCAAAGCCTGCTTCCATAG  397

seq1  TGACATATTCCTCCAATAAGGCCACACCTACTCCAGCAAGACCACACCTC  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTCCTCCAATAAGGCCACACCTACTCCAGCAAGACCACACCTC  447

seq1  ATAATAGTGTCATTCCTTATGGCTCAATCATTCACACACATGAGTCTATG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGTGTCATTCCTTATGGCTCAATCATTCACACACATGAGTCTATG  497

seq1  GGCACAGGATTTCCACATTTCTCTCAACACGGGTTCTTTACAGTATCAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGATTTCCACATTTCTCTCAACACGGGTTCTTTACAGTATCAAT  547

seq1  CCAGTCAGTGGTACCAATTTCTGTGTGAGTTACTTTCCCATTGCTGTTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGTGGTACCAATTTCTGTGTGAGTTACTTTCCCATTGCTGTTAT  597

seq1  GAAATGCCATCAGAACCTACAGAAGAAAGAGCTTTTCTGGCTTACAGTTT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCATCAGAACCTACAGAAGAAAGAGCTTTTCTGGCTTACAGTTT  647

seq1  TAGAAGGGATAGGAGCCTATAGTGGTAGGGAGGCACGGTAGCAAGAGCAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGGGATAGGAGCCTATAGTGGTAGGGAGGCACGGTAGCAAGAGCAG  697

seq1  GAACTGAGGAAGCATATCCTTTGCTGCAACC  723
      |||||||||||||||||||||||||||||||
seq2  GAACTGAGGAAGCATATCCTTTGCTGCAACC  728

seq1: chr14_18311904_18312579
seq2: B6Ng01-174H18.g_70_747

seq1  GAATTCACATTGATAATTTATTAGACGCATTGTGGTACTACTGCAGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTGATAATTTATTAGACGCATTGTGGTACTACTGCAGAAGA  50

seq1  CAAAGCAGCAGAGAGAAGTTGTCTGCACAGACATTCTAAGAGCAGATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCAGCAGAGAGAAGTTGTCTGCACAGACATTCTAAGAGCAGATTTT  100

seq1  TAAGACAGAGATGCACCTGGAAAGCAGGCACTGTTTCACCACCATGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGACAGAGATGCACCTGGAAAGCAGGCACTGTTTCACCACCATGATTG  150

seq1  TTTAGCTATTATTGGACAAGATAATTCCAACTTTTCTGAGGGAGACTGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCTATTATTGGACAAGATAATTCCAACTTTTCTGAGGGAGACTGAC  200

seq1  AAACATCTCTTAATTCCTGACCAGCCAAAATAAACAATTCCACTGGAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCTCTTAATTCCTGACCAGCCAAAATAAACAATTCCACTGGAGTC  250

seq1  TAACTTGGTGAACTAATGAATTTGATTGGGGATGTCTATAGGAGCACACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGGTGAACTAATGAATTTGATTGGGGATGTCTATAGGAGCACACA  300

seq1  TGTATCCCCTTGTTTTCCCTTTGTTGTCGAATTGCTCTGGCTAGAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCCCCTTGTTTTCCCTTTGTTGTCGAATTGCTCTGGCTAGAATTTC  350

seq1  AAATACTATATTGAATAGGTAGCGAGAAAGTGAGCATCTTTGTCTAGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACTATATTGAATAGGTAGCGAGAAAGTGAGCATCTTTGTCTAGTTC  400

seq1  CTGATTTTAGTGGGATTGCTTCAAGTTTCTCTCCATTTAGTTTGATGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTTTAGTGGGATTGCTTCAAGTTTCTCTCCATTTAGTTTGATGTTG  450

seq1  GCTACTGGTTTGCTATAGATTGCTTTTATTATGTTTACATATGGGCCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTGGTTTGCTATAGATTGCTTTTATTATGTTTACATATGGGCCTTG  500

seq1  AATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGT  550

seq1  CAAATGGTTTCTCTGCATCTAAAGAGAGGATAATGTGGATTTTGTCTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGTTTCTCTGCATCTAAAGAGAGGATAATGTGGATTTTGTCTTTG  600

seq1  AG-TTTGTTTTTATAGTGGATTACTTTGATGGATTTCCATATA-TTAAAC  648
      || |||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTTTGTTTTTATAGTGGATTACTTTGATGGATTTCCATATATTTAAAC  650

seq1  CATCGCTGCATCCCTGAAATGAAGCCTA  676
      ||||||||||||||||||||||||||||
seq2  CATCGCTGCATCCCTGAAATGAAGCCTA  678