BAC Information

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BAC

Clone NameB6Ng01-175G03
Chromosome14 (Build37)
Map Location 53,620,293 - 53,621,441
singlet/doubletsinglet
Overlap geneEG667583
Upstream geneE130112L23Rik, Zfp219, G630016D24Rik, LOC100042276, Olfr221, LOC667348, LOC667352, Hnrpc, Rpgrip1, Supt16h, Chd8, Rab2b, Tox4, Mettl3, Sall2, Olfr1513, LOC193533, Olfr1512, Olfr1511, Olfr1510, OTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26
Downstream geneGm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308, LOC328483, EG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-175G03.bB6Ng01-175G03.g
ACCGA003203GA003204
length6811,158
definitionB6Ng01-175G03.b B6Ng01-175G03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacccttcagctctctagggtgctgttgctcccaagtccctctct
gtccttcggtggagtatattcactaaggttactctctgctagtaaagact
cctagtaacacagagcctgaactggccatcttctgtaaccagcaaggcct
caagtggggggactgggacaccaactcagcaaaatgacctttgacctata
gtttgtcctgcctgcaaagtattctgggactagagcctagcaaaaccaac
atcaaagagacggaaagagttcatccagcaactgatggggacagatgcag
agtcccattgggcagcccagggagccctgcagaggagcaggaggaaggat
cgcaggaaccagacaggtcagggacacacagcccacagaatcaactggct
gggattcatggggacttgcagagaccagggggcctgtaggggtctctcct
aggtcctctgcatgtatgttatggctgagtagcttagtattctttgagaa
tcctaacagtgacagcggggactgtccctgactcctttgcctacttgtaa
gacccttttcctcctactgggttgctttgtccagtcttagtgtgatggta
tgtgtctggtcttgtcacaactgtgtttggttttgtcacagaagcccagc
tcttttctgaggggaggtgggagtgtggatc
gaattcactgaaataggaggaacattatcccgggcctggagggccttggc
agtaatgaagaggaaagatgaagggttcttaccaaagaggagataaggag
tcagcaaggggaggagggagccaggcttggtggtcaggggaatctcatag
gtgacttgataagtctctagtcaaaagagaccttaattctgtaacctatt
ctcctggccagtccgtttgtcaattgtctcgattttcccagcaccaatta
taccatttgagatagttcagggcagataccttaagaagattcctagagca
atctcatctagatatgtgcttatctgtgtataatgatctgcagggaatag
agaagacttccaaatagtggctacataaagttaatttaggattttcctaa
aatgacttagacatatattttctcaggaaaaggtataaaatgaatcataa
tgcaggaagttcgtaataatgcaacatgcagagaccaaactgcaaaagta
agagacagaaagacagcgattacaacaagccactcagctttgctgggact
gtgtcaagcaggggtgctggattcatggctctcatcacttttagtgggta
tggctatgccaggtttgattagtaaatacagttctagtgagaagaaatgt
tacacacacctattaatatacaacatatatacatttatatatgaaaacat
tacacataagaaacataatgtatacaatgtgtttatatgcaaagaacaaa
cagcctcactggtgtgtaccaagaccattcttgagctctcaatactaaga
ccctcttgggatgacttattagtgttttgtgtgtctgagtccctcctagg
ttcagagagcgcttagcctgaggcctcaaggtgtcagcagatcttaactg
ctgggggagtgtgcagagaatttcacttctttgtgtgctgattctgaagg
cttgtgacagaagcaaagcctattttctcagtggctgagtgacttccaga
ggtagaaatgtcactgagaaagaacaacatcctgagagttaatagctgac
tgctagtcaccacagtctcttcctggaattaatttaaattggggaaagaa
gcaatgaaacatatgctcttaactttaatcaatggtttcatggctgcagc
tggatggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_53620293_53621441
seq2: B6Ng01-175G03.g_62_1219

seq1  GAATTCACTGAAATAGGAGGAACATTATCCCGGGCCTGGAGGGCCTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGAAATAGGAGGAACATTATCCCGGGCCTGGAGGGCCTTGGC  50

seq1  AGTAATGAAGAGGAAAGATGAAGGGTTCTTACCAAAGAGGAGATAAGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATGAAGAGGAAAGATGAAGGGTTCTTACCAAAGAGGAGATAAGGAG  100

seq1  TCAGCAAGGGGAGGAGGGAGCCAGGCTTGGTGGTCAGGGGAATCTCATAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGGGGAGGAGGGAGCCAGGCTTGGTGGTCAGGGGAATCTCATAG  150

seq1  GTGACTTGATAAGTCTCTAGTCAAAAGAGACCTTAATTCTGTAACCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTTGATAAGTCTCTAGTCAAAAGAGACCTTAATTCTGTAACCTATT  200

seq1  CTCCTGGCCAGTCCGTTTGTCAATTGTCTCGATTTTCCCAGCACCAATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGGCCAGTCCGTTTGTCAATTGTCTCGATTTTCCCAGCACCAATTA  250

seq1  TACCATTTGAGATAGTTCAGGGCAGATACCTTAAGAAGATTCCTAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATTTGAGATAGTTCAGGGCAGATACCTTAAGAAGATTCCTAGAGCA  300

seq1  ATCTCATCTAGATATGTGCTTATCTGTGTATAATGATCTGCAGGGAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCATCTAGATATGTGCTTATCTGTGTATAATGATCTGCAGGGAATAG  350

seq1  AGAAGACTTCCAAATAGTGGCTACATAAAGTTAATTTAGGATTTTCCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACTTCCAAATAGTGGCTACATAAAGTTAATTTAGGATTTTCCTAA  400

seq1  AATGACTTAGACATATATTTTCTCAGGAAAAGGTATAAAATGAATCATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTAGACATATATTTTCTCAGGAAAAGGTATAAAATGAATCATAA  450

seq1  TGCAGGAAGTTCGTAATAATGCAACATGCAGAGACCAAACTGCAAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGAAGTTCGTAATAATGCAACATGCAGAGACCAAACTGCAAAAGTA  500

seq1  AGAGACAGAAAGACAGCGATTACAACAAGCCACTCAGCTTTGCTGGGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAAAGACAGCGATTACAACAAGCCACTCAGCTTTGCTGGGACT  550

seq1  GTGTCAAGCAGGGGTGCTGGATTCATGGCTCTCATCACTTTTAGTGGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAGCAGGGGTGCTGGATTCATGGCTCTCATCACTTTTAGTGGGTA  600

seq1  TGGCTATGCCAGGTTTGATTAGTAAATACAGTTCTAGTGAGAAGAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTATGCCAGGTTTGATTAGTAAATACAGTTCTAGTGAGAAGAAATGT  650

seq1  TACACACACCTATTAATATACAACATATATACATTTATATATGAAAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACCTATTAATATACAACATATATACATTTATATATGAAAACAT  700

seq1  TACACATAAGAAACATAATGTATACAATGTG-TTATATGCAAAGAACAAA  749
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACACATAAGAAACATAATGTATACAATGTGTTTATATGCAAAGAACAAA  750

seq1  CAGCCTCACTGGTGTGTACCAAGACCATTCTTGAGCTCTCAATACTAAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCACTGGTGTGTACCAAGACCATTCTTGAGCTCTCAATACTAAGA  800

seq1  CCCTCTTGGGATGACTTATTAGTGTTTTGTGTGTCTGAGTCCCTCCTAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTTGGGATGACTTATTAGTGTTTTGTGTGTCTGAGTCCCTCCTAGG  850

seq1  TTCAGAGAGCGCTTAGCCTGAGGCCTCAAGGTGTCAGCAGATCTTAACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGAGCGCTTAGCCTGAGGCCTCAAGGTGTCAGCAGATCTTAACTG  900

seq1  CT-GGGGAGTGTGCAGAGAA-TTCACTTCTTTGTGTGCTGATTCTGAAGG  947
      || ||||||||||||||||| |||||||||||||||||||||||||||||
seq2  CTGGGGGAGTGTGCAGAGAATTTCACTTCTTTGTGTGCTGATTCTGAAGG  950

seq1  CTTGTGACAGAAGCAAAGCCTA-TTTCTCAGTGGCTGAGGTGAC-TCCAG  995
      |||||||||||||||||||||| ||||||||||||||| ||||| |||||
seq2  CTTGTGACAGAAGCAAAGCCTATTTTCTCAGTGGCTGA-GTGACTTCCAG  999

seq1  AGGTAGAATTGTCACTGAGAAAGAACAACATCCTGAGAGTT-ATAGCTGA  1044
      |||||||| |||||||||||||||||||||||||||||||| ||||||||
seq2  AGGTAGAAATGTCACTGAGAAAGAACAACATCCTGAGAGTTAATAGCTGA  1049

seq1  CCTGCTAGTCACCACAGTCTCTT-CTGGATTTTAATTTAATTGGG--AAG  1091
       |||||||||||||||||||||| ||||| || | || |||||||  |||
seq2  -CTGCTAGTCACCACAGTCTCTTCCTGGAATTAATTTAAATTGGGGAAAG  1098

seq1  -AGCAATGAAAACATATGCTCCT-ACATTATTC-ATGTTTCTATGGCTGC  1138
       ||||||| |||||||||||| | || ||| || ||| ||  ||||||||
seq2  AAGCAATG-AAACATATGCTCTTAACTTTAATCAATGGTTTCATGGCTGC  1147

seq1  AGCTGGATGGT  1149
      |||||||||||
seq2  AGCTGGATGGT  1158