BAC Information

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BAC

Clone NameB6Ng01-176J11
Chromosome14 (Build37)
Map Location 38,040,128 - 38,170,546
singlet/doubletdoublet
Overlap genenone
Upstream geneGcap14, LOC100040341, LOC670331, Rgr, Lrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm
Downstream geneLOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-176J11.bB6Ng01-176J11.g
ACCGA004089GA004090
length1,1041,181
definitionB6Ng01-176J11.b B6Ng01-176J11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,169,429 - 38,170,546)(38,040,128 - 38,041,320)
sequence
gaattctagcatttatgtaacaaggtaagcattctacaaaggcctgtaac
tggagctcttagggattctattctctttttttgaacccacatgcacaggt
gggcaaacatccttacgtgccaaggtgcacatcagggggccagagaacaa
cgctcaaggggtcagttccctcctgacaccttatgggagacagtgatcga
actcagatcagtaagcctgttcctaagaaccctacccactgagcaagctc
accagcccacagcccaacacgtaataaactgatacttaacgaataaaagc
aatcagaaagaggcgtctgacttcttaggatgtgtggccttttctgctat
atcaaaacactaagcaattacagtttaatgtggcacttgctacggggtga
ggcaatacacactttccgagctcagaaggaatgcccgagcccggctctgg
gtacccaggaaggctttctggaaagtagcacctgggtagacacctgtagt
ataggaagcagttctcagataaaaagagagagaggtgtctgatcagacag
acgttagaaacgtgaaagcagtaggtcaaagggacaacagtttgccgttg
tgagctgctgcagatggagtcagagatagacagggaatgaaatccatcgg
gtgaagacccagaatctttatagtctcctgaaggtacttgtgtgttatcc
agagggacacaaacagctctggagaatttcaagaacgaaggcatggtcag
gcagaaagaccattctgattgacattaggaagttcaaagagaggctgtga
ggctaaaggcaaatggaggaggaaaaaaaaaaaaaaaaaaagaggaagtg
tgccaaaagtaataacagctactcacggaaggaggcctaccagacacagc
agacagaagtgccccccacaccaagaggtcatgtcccagcagaccaccaa
gaaatccagctgctgcagccagcagaagcaagttgggacaggtctcccca
cctcttcccaggctacaacatcggatgcaatagagtctctgtattgtgtg
tcagagcagacgctctcctcatgatccccctggaggcacagcacatcgtg
ggga

gaattcaagtcagtttgattgtgtgtttttctccagccctggttatctgt
acgagtgaaggctcagagtaagtgcagaaccagatttaatttaggattgt
ttttgccgggtgactagtagattgagagacgtgaagatggagtatgcaag
ggagggagaaaaggaaggaatataaatttaatctgagtgagtaagtaagt
aagttagtgagtgagtgaagtcatatgggagctaggcacagtgggaaggg
tcaagcagggaattggaaattcttagcagtttcagggagtctgagacttg
aggtactgtggtattatgcataggtcacacctgtcattttttttctagtg
tttccagttttgatgcctctgaagacagggatgctacttgccatagccta
ctgcatttccctaccatgtctgctttttcactgcagccccaaatttccag
ctctcatttccagtgcttaccattagtcctctctgccctgctggaccact
ggctctccttgagcaacccagacaagctcatatccgcaagcctttgcatt
ttcagcttgctctttcgggcacgaccttcttttacacattagccttgctc
agttttgtgctcctaacgtttttactcaggtactttctgtgcctggatac
cattattaaaagcaaatgaccctcacaatacttcctaagccccttgctga
ttatttatttatttatttatttatttatttatttatttatttatttatag
tcagggtttctctgtatagccctggctgtcctggaactcactttgtagac
tcgaactcagaaatccgcctgcctctgcctcccgagtgctgggattaaag
gtgttcgccaacatgcccggctcccttgctgatttaatttccccataagc
acttctcataccttgactacatgaagtatgagcatatcatatactctaat
ttttacaccaagagtataaaaatatctctcgtacactgcttaaaagcaca
tagctcagatcccagacattaaaaagatagggattattaaaaggactata
ggctataactgtgggttggcatatatactacattttatattagttgtacc
tgttaaccttgaccttaataatatggaatacaatattagctattgaccaa
ttcgatttgaaaactgtttttagaaccttct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38169429_38170546
seq2: B6Ng01-176J11.b_41_1144 (reverse)

seq1  TCCCCACGGATGTGCTGGTGCCCTCAGGGGGAATCCATGGAGGAGAAGCG  50
      ||||||| |||||||| |||||  ||||||||   ||| |||||| ||||
seq2  TCCCCAC-GATGTGCT-GTGCCTCCAGGGGGA--TCAT-GAGGAG-AGCG  44

seq1  TCTGCTCCTGACACAC-ATACAAGGAGGACTCTAATTTGCATCCGATG-T  98
      |||||| ||||||||| |||||  || |||||||  |||||||||||| |
seq2  TCTGCT-CTGACACACAATACA--GA-GACTCTA--TTGCATCCGATGTT  88

seq1  GTAGCCTTGGGAAGAGGTTGGGGAAGACCCTGTCCC-ACTTGCTTCTGCT  147
      |||||| |||||||||||  ||| ||| |||||||| |||||||||||| 
seq2  GTAGCC-TGGGAAGAGGT--GGGGAGA-CCTGTCCCAACTTGCTTCTGC-  133

seq1  TGGCTGCAGCAGCTGGATTTCTTGGTGGTCTGCTGGGACATGACCTCTTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGCAGCAGCTGGATTTCTTGGTGGTCTGCTGGGACATGACCTCTTG  183

seq1  GTGTGGGGGGCACTTCTGTCTGCTGTGTCTGGTAGGCCTCCTTCCGTGAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGGGGCACTTCTGTCTGCTGTGTCTGGTAGGCCTCCTTCCGTGAG  233

seq1  TAGCTGTTATTACTTTTGGCACACTTCCTCTTTTTTTTTTTTTTTTTTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTTATTACTTTTGGCACACTTCCTCTTTTTTTTTTTTTTTTTTTC  283

seq1  CTCCTCCATTTGCCTTTAGCCTCACAGCCTCTCTTTGAACTTCCTAATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCATTTGCCTTTAGCCTCACAGCCTCTCTTTGAACTTCCTAATGT  333

seq1  CAATCAGAATGGTCTTTCTGCCTGACCATGCCTTCGTTCTTGAAATTCTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGAATGGTCTTTCTGCCTGACCATGCCTTCGTTCTTGAAATTCTC  383

seq1  CAGAGCTGTTTGTGTCCCTCTGGATAACACACAAGTACCTTCAGGAGACT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGTTTGTGTCCCTCTGGATAACACACAAGTACCTTCAGGAGACT  433

seq1  ATAAAGATTCTGGGTCTTCACCCGATGGATTTCATTCCCTGTCTATCTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGATTCTGGGTCTTCACCCGATGGATTTCATTCCCTGTCTATCTCT  483

seq1  GACTCCATCTGCAGCAGCTCACAACGGCAAACTGTTGTCCCTTTGACCTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCATCTGCAGCAGCTCACAACGGCAAACTGTTGTCCCTTTGACCTA  533

seq1  CTGCTTTCACGTTTCTAACGTCTGTCTGATCAGACACCTCTCTCTCTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTTCACGTTTCTAACGTCTGTCTGATCAGACACCTCTCTCTCTTTT  583

seq1  TATCTGAGAACTGCTTCCTATACTACAGGTGTCTACCCAGGTGCTACTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGAACTGCTTCCTATACTACAGGTGTCTACCCAGGTGCTACTTT  633

seq1  CCAGAAAGCCTTCCTGGGTACCCAGAGCCGGGCTCGGGCATTCCTTCTGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAGCCTTCCTGGGTACCCAGAGCCGGGCTCGGGCATTCCTTCTGA  683

seq1  GCTCGGAAAGTGTGTATTGCCTCACCCCGTAGCAAGTGCCACATTAAACT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGGAAAGTGTGTATTGCCTCACCCCGTAGCAAGTGCCACATTAAACT  733

seq1  GTAATTGCTTAGTGTTTTGATATAGCAGAAAAGGCCACACATCCTAAGAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTGCTTAGTGTTTTGATATAGCAGAAAAGGCCACACATCCTAAGAA  783

seq1  GTCAGACGCCTCTTTCTGATTGCTTTTATTCGTTAAGTATCAGTTTATTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGACGCCTCTTTCTGATTGCTTTTATTCGTTAAGTATCAGTTTATTA  833

seq1  CGTGTTGGGCTGTGGGCTGGTGAGCTTGCTCAGTGGGTAGGGTTCTTAGG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTTGGGCTGTGGGCTGGTGAGCTTGCTCAGTGGGTAGGGTTCTTAGG  883

seq1  AACAGGCTTACTGATCTGAGTTCGATCACTGTCTCCCATAAGGTGTCAGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGCTTACTGATCTGAGTTCGATCACTGTCTCCCATAAGGTGTCAGG  933

seq1  AGGGAACTGACCCCTTGAGCGTTGTTCTCTGGCCCCCTGATGTGCACCTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACTGACCCCTTGAGCGTTGTTCTCTGGCCCCCTGATGTGCACCTT  983

seq1  GGCACGTAAGGATGTTTGCCCACCTGTGCATGTGGGTTCAAAAAAAGAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGTAAGGATGTTTGCCCACCTGTGCATGTGGGTTCAAAAAAAGAGA  1033

seq1  ATAGAATCCCTAAGAGCTCCAGTTACAGGCCTTTGTAGAATGCTTACCTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCCCTAAGAGCTCCAGTTACAGGCCTTTGTAGAATGCTTACCTT  1083

seq1  GTTACATAAATGCTAGAATTC  1118
      |||||||||||||||||||||
seq2  GTTACATAAATGCTAGAATTC  1104


seq1: chr14_38040128_38041320
seq2: B6Ng01-176J11.g_64_1244

seq1  GAATTCAAGTCAGTTTGATTGTGTGTTTTTCTCCAGCCCTGGTTATCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCAGTTTGATTGTGTGTTTTTCTCCAGCCCTGGTTATCTGT  50

seq1  ACGAGTGAAGGCTCAGAGTAAGTGCAGAACCAGATTTAATTTAGGATTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTGAAGGCTCAGAGTAAGTGCAGAACCAGATTTAATTTAGGATTGT  100

seq1  TTTTGCCGGGTGACTAGTAGATTGAGAGACGTGAAGATGGAGTATGCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCGGGTGACTAGTAGATTGAGAGACGTGAAGATGGAGTATGCAAG  150

seq1  GGAGGGAGAAAAGGAAGGAATATAAATTTAATCTGAGTGAGTAAGTAAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAGAAAAGGAAGGAATATAAATTTAATCTGAGTGAGTAAGTAAGT  200

seq1  AAGTTAGTGAGTGAGTGAAGTCATATGGGAGCTAGGCACAGTGGGAAGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTGAGTGAGTGAAGTCATATGGGAGCTAGGCACAGTGGGAAGGG  250

seq1  TCAAGCAGGGAATTGGAAATTCTTAGCAGTTTCAGGGAGTCTGAGACTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCAGGGAATTGGAAATTCTTAGCAGTTTCAGGGAGTCTGAGACTTG  300

seq1  AGGTACTGTGGTATTATGCATAGGTCACACCTGTCATTTTTTTTCTAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTGTGGTATTATGCATAGGTCACACCTGTCATTTTTTTTCTAGTG  350

seq1  TTTCCAGTTTTGATGCCTCTGAAGACAGGGATGCTACTTGCCATAGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTTTTGATGCCTCTGAAGACAGGGATGCTACTTGCCATAGCCTA  400

seq1  CTGCATTTCCCTACCATGTCTGCTTTTTCACTGCAGCCCCAAATTTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTTCCCTACCATGTCTGCTTTTTCACTGCAGCCCCAAATTTCCAG  450

seq1  CTCTCATTTCCAGTGCTTACCATTAGTCCTCTCTGCCCTGCTGGACCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTTCCAGTGCTTACCATTAGTCCTCTCTGCCCTGCTGGACCACT  500

seq1  GGCTCTCCTTGAGCAACCCAGACAAGCTCATATCCGCAAGCCTTTGCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCTTGAGCAACCCAGACAAGCTCATATCCGCAAGCCTTTGCATT  550

seq1  TTCAGCTTGCTCTTTCGGGCACGACCTTCTTTTACACATTAGCCTTGCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTTGCTCTTTCGGGCACGACCTTCTTTTACACATTAGCCTTGCTC  600

seq1  AGTTTTGTGCTCCTAACGTTTTTACTCAGGTACTTTCTGTGCCTGGATAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTGTGCTCCTAACGTTTTTACTCAGGTACTTTCTGTGCCTGGATAC  650

seq1  CATTATTAAAAGCAAATGACCCTCACAATACTTCCTAAGCCCCTTGCTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATTAAAAGCAAATGACCCTCACAATACTTCCTAAGCCCCTTGCTGA  700

seq1  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATAG  750

seq1  TCAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGAC  800

seq1  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAG  850

seq1  GTGTTCGCCAACATGCCCGGCTCCCTTGCTGATTTAATTTCCCCATAAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCGCCAACATGCCCGGCTCCCTTGCTGATTTAATTTCCCCATAAGC  900

seq1  ACTTCTCATACCTTGACTACATGAAGTATGAGCATATCATATACTCTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTCATACCTTGACTACATGAAGTATGAGCATATCATATACTCTAAT  950

seq1  TTTTACACCAAGAGTATAAAAATATCTCTCGTACACTGCTTAAAAGCAAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTTTACACCAAGAGTATAAAAATATCTCTCGTACACTGCTTAAAAGC-AC  999

seq1  ATAGCTCAGATCCCAAGACATTAAAAAGATAGG--ATATTAAAAGAACTA  1048
      |||||||||||||| ||||||||||||||||||   ||||||||| ||||
seq2  ATAGCTCAGATCCC-AGACATTAAAAAGATAGGGATTATTAAAAGGACTA  1048

seq1  TAGGCTATTAACTGTGGG-TGGCATATAAATACATACCATTTATATTAAG  1097
      ||||||| |||||||||| ||||||||  |||| |||  |||||||| ||
seq2  TAGGCTA-TAACTGTGGGTTGGCATAT--ATAC-TACATTTTATATT-AG  1093

seq1  TTGTACTTGTTAACACTGACCTTAATAAATAGGAATACAAATAATTTTAA  1147
      |||||| |||||||  ||||||||||||   |||||||||     | | |
seq2  TTGTACCTGTTAACCTTGACCTTAATAATATGGAATACAA-----TATTA  1138

seq1  TCTATTAACAAAATTCCGTATTTTGAAAACTGTTTTAAGAA-CTTCT  1193
       ||||| ||  |||||     ||||||||||||||| |||| |||||
seq2  GCTATTGAC-CAATTC---GATTTGAAAACTGTTTTTAGAACCTTCT  1181


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