BAC Information

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BAC

Clone NameB6Ng01-177C08
Chromosome14 (Build37)1 (Build37)
Map Location 10,053,769 - 10,054,77375,065,286 - 75,065,778
singlet/doubletsingletsinglet
Overlap geneLOC100041948
Upstream geneKctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik
Downstream geneFhit, LOC100042415
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177C08.bB6Ng01-177C08.g
ACCGA004498GA004499
length1,006569
definitionB6Ng01-177C08.b B6Ng01-177C08.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(10,053,769 - 10,054,773)(75,065,286 - 75,065,778)
sequence
gaattcattcagcattttagcaaacagcctctatatggaatgaagaaaat
cttgtcacaaattccctagattcttcagcaaatgctcaaaatcaaggcac
tagttgaaatttatgatttttggctacaagtgaatattgtgtgatgctta
caattattgaccttaataatgttaaatctacaagtttaagaaaatgtcaa
ctggatgaggtttggcttcaccttagtttaaatataattgtatcatcaga
ataaagatcccattattatctcattattataacatccaacttatagcaac
caaacccctcacacatctgttctctcctctccatgcctttctccaggaga
accagtttactaaattgattgatatcagataaaagcatggcaaagcaaaa
acattgccacatgaacatatcaaccacacatgggttttcttcatgtgagg
agttctctataacatgtgtacaacagttggtgtttatttaaagaacagaa
acaacaaatacatttgtgtacatacgtgtatacaaacatacagatttatt
gtgaggaatcagtatacatctgtattgaggttaaagtatcccaggacttg
ccatctgaaaggcaaagaccaaagaaacccaatgatgacattgagttcac
tttcaaagactggagaagccagagatctagtggtgtaaatctcagtccat
ttgataaaatcagacaagatatgccagtttaagtaatgaggcaggaaaag
gaaaattgggaaaggagggcacaggggcttggtctctttgcttcaataag
caatgctgaattgaatatgtccatccttactgggagtgaggggttcattt
taatgttacccagtagtccaatagtccaaatgttgatctcatcatgatcc
tttattttaaagattcctaatatattactttcagaattctttcctcctac
gtgagttaacagccaccaaatttgggtccatgagcctctgtagaaaatga
cctcat
cataaatgcctacgctcaggctgaggaggatttgggccctgaaacagaga
aagtggaggaggctgggggggggggggtcctacaattctatggctaactt
ccgttccctttatttaccaggttatagtaggatcagttaaaaaccactat
ctgcttctaaaggaccagggctcgattctcagcatccacatggcagttca
taaccatctgtaactccaaaggggaaattgatgcccttttctggtctctg
tgggcactgcatgtatgtggtacacagatatacatgcaggcaaaacacct
atatacatataataaattaattaactctcctttattccatttgatggagt
cctatatatatttttgtgatgacatttggagaagtccttttatataactt
aagcagttaatcctggtttggaatagatagcatcttgcttctttctctct
tttctttctttccttccttccttccttccttccttccttccttcctccct
tcctttttttttttttttttttttttgagacagggtttcttgtataggcc
tggctgtcctggaactcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_10053769_10054773
seq2: B6Ng01-177C08.b_45_1050 (reverse)

seq1  ATGAAGTCATTTTCTAC-CAAGCTCAATGACCCAAATTTGGTGGCTG-TA  48
      |||| ||||||||||||  | |||||  ||||||||||||||||||| ||
seq2  ATGAGGTCATTTTCTACAGAGGCTCATGGACCCAAATTTGGTGGCTGTTA  50

seq1  ACTCACGTA-GAGGAAAGAATTCTTGAAAGT-ATATAATAAGAATTCTTA  96
      ||||||||| ||||||||||||| ||||||| ||||| || ||| |||| 
seq2  ACTCACGTAGGAGGAAAGAATTC-TGAAAGTAATATATTAGGAA-TCTTT  98

seq1  AAAATAAAAGGATCATGATGAGATCAACATTTGGACTATTGGACTACTGG  146
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAT-AAAGGATCATGATGAGATCAACATTTGGACTATTGGACTACTGG  147

seq1  GTAACATTAAAATGAACCCCTCACTCCCAGTAAGGATGGACATATTCAAT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACATTAAAATGAACCCCTCACTCCCAGTAAGGATGGACATATTCAAT  197

seq1  TCAGCATTGCTTTATTGAAGCAAAGAGACCAAGCCCCTGTGCCCTCCTTT  246
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTGC-TTATTGAAGCAAAGAGACCAAGCCCCTGTGCCCTCCTTT  246

seq1  CCCAATTTTCCTTTTCCTGCCTCATTACTTAAACTGGCATATCTTGTCTG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTTCCTTTTCCTGCCTCATTACTTAAACTGGCATATCTTGTCTG  296

seq1  ATTTTATC-AATGGACTGAGATTTACACCACTAGATCTCTGGCTTCTCCA  345
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATCAAATGGACTGAGATTTACACCACTAGATCTCTGGCTTCTCCA  346

seq1  GTCTTTGAAAGTGAACTCAATGTCATCATTGGGTTTCTTTGGTCTTTGCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGAAAGTGAACTCAATGTCATCATTGGGTTTCTTTGGTCTTTGCC  396

seq1  TTTCAGATGGCAAGTCCTGGGATACTTTAACCTCAATACAGATGTATACT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGGCAAGTCCTGGGATACTTTAACCTCAATACAGATGTATACT  446

seq1  GATTCCTCACAATAAATCTGTATGTTTGTATACACGTATGTACACAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTCACAATAAATCTGTATGTTTGTATACACGTATGTACACAAATG  496

seq1  TATTTGTTGTTTCTGTTCTTTAAATAAACACCAACTGTTGTACACATGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTTGTTTCTGTTCTTTAAATAAACACCAACTGTTGTACACATGTT  546

seq1  ATAGAGAACTCCTCACATGAAGAAAACCCATGTGTGGTTGATATGTTCAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGAACTCCTCACATGAAGAAAACCCATGTGTGGTTGATATGTTCAT  596

seq1  GTGGCAATGTTTTTGCTTTGCCATGCTTTTATCTGATATCAATCAATTTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAATGTTTTTGCTTTGCCATGCTTTTATCTGATATCAATCAATTTA  646

seq1  GTAAACTGGTTCTCCTGGAGAAAGGCATGGAGAGGAGAGAACAGATGTGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACTGGTTCTCCTGGAGAAAGGCATGGAGAGGAGAGAACAGATGTGT  696

seq1  GAGGGGTTTGGTTGCTATAAGTTGGATGTTATAATAATGAGATAATAATG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTTTGGTTGCTATAAGTTGGATGTTATAATAATGAGATAATAATG  746

seq1  GGATCTTTATTCTGATGATACAATTATATTTAAACTAAGGTGAAGCCAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTTTATTCTGATGATACAATTATATTTAAACTAAGGTGAAGCCAAA  796

seq1  CCTCATCCAGTTGACATTTTCTTAAACTTGTAGATTTAACATTATTAAGG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCCAGTTGACATTTTCTTAAACTTGTAGATTTAACATTATTAAGG  846

seq1  TCAATAATTGTAAGCATCACACAATATTCACTTGTAGCCAAAAATCATAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAATTGTAAGCATCACACAATATTCACTTGTAGCCAAAAATCATAA  896

seq1  ATTTCAACTAGTGCCTTGATTTTGAGCATTTGCTGAAGAATCTAGGGAAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACTAGTGCCTTGATTTTGAGCATTTGCTGAAGAATCTAGGGAAT  946

seq1  TTGTGACAAGATTTTCTTCATTCCATATAGAGGCTGTTTGCTAAAATGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGACAAGATTTTCTTCATTCCATATAGAGGCTGTTTGCTAAAATGCT  996

seq1  GAATGAATTC  1005
      ||||||||||
seq2  GAATGAATTC  1006

seq1: chr1_75065286_75065778
seq2: B6Ng01-177C08.g_143_634 (reverse)

seq1  GTGAGTTCCAGGACAGCCAGGACTATACAAAGAAACCCTGTCTCAAAAAA  50
      ||||||||||||||||||||| |||||| |||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGGCCTATAC-AAGAAACCCTGTCTCAAAAAA  49

seq1  AAAAAAAAAAAAAAAAAGGAAGGGAGGAAGGAAGGAAGGAAGGAAGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAGGAAGGGAGGAAGGAAGGAAGGAAGGAAGGAAG  99

seq1  GAAGGAAGGAAAGAAAGAAAAGAGAGAAAGAAGCAAGATGCTATCTATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGGAAAGAAAGAAAAGAGAGAAAGAAGCAAGATGCTATCTATTC  149

seq1  CAAACCAGGATTAACTGCTTAAGTTATATAAAAGGACTTCTCCAAATGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGGATTAACTGCTTAAGTTATATAAAAGGACTTCTCCAAATGTC  199

seq1  ATCACAAAAATATATATAGGACTCCATCAAATGGAATAAAGGAGAGTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAAAAATATATATAGGACTCCATCAAATGGAATAAAGGAGAGTTAA  249

seq1  TTAATTTATTATATGTATATAGGTGTTTTGCCTGCATGTATATCTGTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTATTATATGTATATAGGTGTTTTGCCTGCATGTATATCTGTGTA  299

seq1  CCACATACATGCAGTGCCCACAGAGACCAGAAAAGGGCATCAATTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACATGCAGTGCCCACAGAGACCAGAAAAGGGCATCAATTTCCCC  349

seq1  TTTGGAGTTACAGATGGTTATGAACTGCCATGTGGATGCTGAGAATCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTTACAGATGGTTATGAACTGCCATGTGGATGCTGAGAATCGAG  399

seq1  CCCTGGTCCTTTAGAAGCAGATAGTGGTTTTTAACTGATCCTACTATAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGTCCTTTAGAAGCAGATAGTGGTTTTTAACTGATCCTACTATAAC  449

seq1  CTGGTAAATAAAGGGAACGGAAGTTAGCCATAGAATTGTAGGA  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAATAAAGGGAACGGAAGTTAGCCATAGAATTGTAGGA  492