BAC Information

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BAC

Clone NameB6Ng01-177N21
Chromosome14 (Build37)
Map Location 82,280,171 - 82,402,986
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC639207
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177N21.bB6Ng01-177N21.g
ACCGA005020GA005021
length1,0421,021
definitionB6Ng01-177N21.b B6Ng01-177N21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,401,927 - 82,402,986)(82,280,171 - 82,280,915)
sequence
gaattctaatctctgtactaaaggtcttctatggagcagtaaatgaaaaa
atgtacggggaacattgttttagcacctgttttattgcctgcacttgatg
taattagtgtacttaaagacagccccattggttacaccatatggtttgta
atcattagtgtaataatagatgtaccatttaaaatggaactcaacaacag
agtgctattgttccatgacgttagcgtaataggggactttcagcaagctc
agtcccaatttggagtctctgccacacttaggttcctaggataaggaatg
ttgcatgatgcaatagcaaatgtgcagcaataatctttagattccagtaa
atatttaaatgtgttgattcacacatctgaacctaatataatgacatctt
aaactcttaataacactggaaataaatttcactaacatttaaaataggga
gttgtgttatcttttggtttgttaacactgaatttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttccctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttcttccttccttccttccttccttccttccttccttcctt
tctttctttctatctttctttctttcttttttttttggtttttccagaca
agctttctctgtatacagccctggctgtcctggaactcactttgtacaca
aggctggcctcgaactcagaaatccacctgcctctgcctcctgaatgctg
ggattaaagcagtgagccaacacacccggccacactgaatttctattgcc
caagtttatatgaaactttatttgaagcttatttaatgcttgctactcac
actgtattcagttgcattatgaaagaaagatcacaattcagtaatgtagg
agtgatagagtaccttattatcaagaaaaaatgtcctttacgacatcaac
cattgatatgttacagtgtgctcctaagtgacaccatagcag

gaattctttgtttagccctgagccccatttttaatggggttatttgattt
tctggaggtaacccaatcacaaaaaaacctcacatgatatgtactcactg
ataagtggatatttgcccagaaacttagaatacccaagatacaatttgca
aaacacatgaaactcaagaagaatgaagactaaagtgtggacactttgcc
cctttttagtattgagaacaaaacacccatggaaggagttacagagacaa
actttggagctgagaggaaaggatggaccacctggagactgctgcaccca
gggatcaatcccataatcagcctccaaacacagacaccattgcatatgcc
agcaagattttgctgaaaagaccccgataaagctgtctcttgtgaggcta
tgcctgtgcctggcaaacacagaagtggatgctcatagtcagctattgga
tgcaacacagggcccccagtggaggagctagagaaagtacccaaggagat
aaaggggtctgcaactctatagatagaacaacaatatgaactaaccagta
cccccacagcttgtttctctagctgcatatgtagcagaagatggcctagg
tggccgtcattggtaagagtggccccttggtcttacaaactctataagcc
ccagtacaggggaacatcagggccaagaaatgaaagtgggtgggtagggg
agcagaccaggtggagggtataaggaactttcaggatagcatttgaaatg
tatataaagaaaataataaataaaaaacatttttaaaagaaaaagaaaaa
aaataaaagaagacaaaccatacagaacaaaattttttaaaaaagaaaaa
aaaatcatcaactaattgtgctgtcctgactggatgtctacttgtagaag
agcacaaaccttgtagtccaagcagacgaagacctcacataaatcagaat
aaactgaacctaataaaagcgaaagttaaaatagcctggaacacatgcac
agggaaattttctttttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_82401927_82402986
seq2: B6Ng01-177N21.b_50_1091 (reverse)

seq1  CTGCTATGTGTTGTCACTTAGGAGCACACTGTAAACATAACCAATTTGTT  50
      ||||||  || ||||||||||||||||||||| |||||| | |   || |
seq2  CTGCTA--TGGTGTCACTTAGGAGCACACTGT-AACATATCAA---TGGT  44

seq1  TGATGTTCGTAAAGGAACATTTTTTCCTTGATTTATAAGGTACTCTATCA  100
      ||||| ||||||||| ||||||||| ||||| | ||||||||||||||||
seq2  TGATG-TCGTAAAGG-ACATTTTTT-CTTGA-TAATAAGGTACTCTATCA  90

seq1  CCTCCTTACATTACTGAATTTGTTGATCTTTCTTTTCATAATTGCAACTG  150
       |||| ||||||||||||||   ||||||||| |||||||| ||||||||
seq2  -CTCC-TACATTACTGAATT--GTGATCTTTC-TTTCATAA-TGCAACTG  134

seq1  AATACAGTGTGAGTAGCAAGCATTTAAATAAGCTTTCAAATAAAGTTTCA  200
      |||||||||||||||||||||| |||||||||| ||||||||||||||||
seq2  AATACAGTGTGAGTAGCAAGCA-TTAAATAAGC-TTCAAATAAAGTTTCA  182

seq1  TATAAACTTGGGCAATAGAAATTCAGTGTTGCCGGGTGTGTTGGCTCACT  250
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATAAACTTGGGCAATAGAAATTCAGTGTGGCCGGGTGTGTTGGCTCACT  232

seq1  GCTTTAATCCCAGCATTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAATCCCAGCATTCAGGAGGCAGAGGCAGGTGGATTTCTGAGTTCG  282

seq1  AGGCCAGCCTTGTGTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCTTGTGTACAAAGTGAGTTCCAGGACAGCCAGGGCTGTATAC  332

seq1  AGAGAAAGCTTGTCTGGAAAAACCAAAAAAAAAAGAAAGAAAGAAAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCTTGTCTGGAAAAACCAAAAAAAAAAGAAAGAAAGAAAGATA  382

seq1  GAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGA  432

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  482

seq1  GAAAGAAAGAAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGGGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAA  532

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAATTCAGTGTTAACAAACCAAAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAATTCAGTGTTAACAAACCAAAAG  582

seq1  ATAACACAACTCCCTATTTTAAATGTTAGTGAAATTTATTTCCAGTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACAACTCCCTATTTTAAATGTTAGTGAAATTTATTTCCAGTGTTA  632

seq1  TTAAGAGTTTAAGATGTCATTATATTAGGTTCAGATGTGTGAATCAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAGTTTAAGATGTCATTATATTAGGTTCAGATGTGTGAATCAACAC  682

seq1  ATTTAAATATTTACTGGAATCTAAAGATTATTGCTGCACATTTGCTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATATTTACTGGAATCTAAAGATTATTGCTGCACATTTGCTATTG  732

seq1  CATCATGCAACATTCCTTATCCTAGGAACCTAAGTGTGGCAGAGACTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGCAACATTCCTTATCCTAGGAACCTAAGTGTGGCAGAGACTCCA  782

seq1  AATTGGGACTGAGCTTGCTGAAAGTCCCCTATTACGCTAACGTCATGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGGACTGAGCTTGCTGAAAGTCCCCTATTACGCTAACGTCATGGAA  832

seq1  CAATAGCACTCTGTTGTTGAGTTCCATTTTAAATGGTACATCTATTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAGCACTCTGTTGTTGAGTTCCATTTTAAATGGTACATCTATTATTA  882

seq1  CACTAATGATTACAAACCATATGGTGTAACCAATGGGGCTGTCTTTAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGATTACAAACCATATGGTGTAACCAATGGGGCTGTCTTTAAGT  932

seq1  ACACTAATTACATCAAGTGCAGGCAATAAAACAGGTGCTAAAACAATGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAATTACATCAAGTGCAGGCAATAAAACAGGTGCTAAAACAATGTT  982

seq1  CCCCGTACATTTTTTCATTTACTGCTCCATAGAAGACCTTTAGTACAGAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGTACATTTTTTCATTTACTGCTCCATAGAAGACCTTTAGTACAGAG  1032

seq1  ATTAGAATTC  1060
      ||||||||||
seq2  ATTAGAATTC  1042


seq1: chr14_82280171_82280915
seq2: B6Ng01-177N21.g_356_1091

seq1  AGACTGCTGCACCCAGGGATCAATCCCATAATCAGCCTCCAAACACAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTGCACCCAGGGATCAATCCCATAATCAGCCTCCAAACACAGAC  50

seq1  ACCATTGCATATGCCAGCAAGATTTTGCTGAAAAGACCCCGATAAAGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTGCATATGCCAGCAAGATTTTGCTGAAAAGACCCCGATAAAGCTG  100

seq1  TCTCTTGTGAGGCTATGCCTGTGCCTGGCAAACACAGAAGTGGATGCTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGTGAGGCTATGCCTGTGCCTGGCAAACACAGAAGTGGATGCTCA  150

seq1  TAGTCAGCTATTGGATGCAACACAGGGCCCCCAGTGGAGGAGCTAGAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGCTATTGGATGCAACACAGGGCCCCCAGTGGAGGAGCTAGAGAA  200

seq1  AGTACCCAAGGAGATAAAGGGGTCTGCAACTCTATAGATAGAACAACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCAAGGAGATAAAGGGGTCTGCAACTCTATAGATAGAACAACAAT  250

seq1  ATGAACTAACCAGTACCCCCACAGCTTGTTTCTCTAGCTGCATATGTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTAACCAGTACCCCCACAGCTTGTTTCTCTAGCTGCATATGTAGC  300

seq1  AGAAGATGGCCTAGGTGGCCGTCATTGGTAAGAGTGGCCCCTTGGTCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGCCTAGGTGGCCGTCATTGGTAAGAGTGGCCCCTTGGTCTTA  350

seq1  CAAACTCTATAAGCCCCAGTACAGGGGAACATCAGGGCCAAGAAATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTATAAGCCCCAGTACAGGGGAACATCAGGGCCAAGAAATGAAA  400

seq1  GTGGGTGGGTAGGGGAGCAGACCAGGTGGAGGGTATAAGGAACTTTCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGGTAGGGGAGCAGACCAGGTGGAGGGTATAAGGAACTTTCAGG  450

seq1  ATAGCATTTGAAATGTATATAAAGAAAATAATAAATAAAAAACATTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATAGCATTTGAAATGTATATAAAGAAAATAATAAATAAAAAACATTTTT-  499

seq1  AAAAGAAAAAGAAAAAAAATAAAAAGAAGACAAAACCATACAGAACAAAA  550
      |||||||||||||||||||| |||||||||| ||||||||||||||||||
seq2  AAAAGAAAAAGAAAAAAAAT-AAAAGAAGAC-AAACCATACAGAACAAAA  547

seq1  TTTTTTAAAAAAGAAAAAAAAATCATCAACTAATTGTGCTGTCCTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAAAAAGAAAAAAAAATCATCAACTAATTGTGCTGTCCTGACTG  597

seq1  GATGTCTACTTGTAGAAGAGCACAAACCTTGTAGTCCAAGCAGACGAAGG  650
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATGTCTACTTGTAGAAGAGCACAAACCTTGTAGTCCAAGCAGACGAA-G  646

seq1  ACCTCAACATAAAACCAGATAAACTGAACCTAATAAAAGCGAAAGTTAAA  700
      ||||| ||||||| |   ||||||||||||||||||||||||||||| ||
seq2  ACCTC-ACATAAATCAGAATAAACTGAACCTAATAAAAGCGAAAGTT-AA  694

seq1  AATAGCCTTGAACACATTGGCACAGGGGAAATTTTCTTTTTAAAA  745
      |||||||| ||||||||  ||||| ||||||||||||||||||||
seq2  AATAGCCTGGAACACAT--GCACA-GGGAAATTTTCTTTTTAAAA  736


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