BAC Information

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BAC

Clone NameB6Ng01-177O10
Chromosome14 (Build37)
Map Location 101,415,538 - 101,610,352
singlet/doubletdoublet
Overlap gene1700110M21Rik, LOC100043421
Upstream geneKlf12, LOC100043413, EG668683, EG668684
Downstream geneLOC382936, Tbc1d4, Commd6, Uchl3, Lmo7, LOC100043795, LOC545567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177O10.bB6Ng01-177O10.g
ACCGA005040GA005041
length1,0841,039
definitionB6Ng01-177O10.b B6Ng01-177O10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,415,538 - 101,416,633)(101,609,299 - 101,610,352)
sequence
gaattcacttataataaaatatcttttaccattacttttatagcaaaaag
tacaaataatataaatgtacagtaagaaatgattaatgaaccacatctct
cgctcttccagaatattatgcaacaattaaaatgtaatttgtgaaagagt
ataatcacacagtaaggtgttgttatataatattaatgagacctacagtt
ttaaagcacacatatactattaaatctcaatttagtcatatttaatgctt
aaaaactgtaaaattattaataataatcatataagagaaaagtgcatttt
aaagaatatagttttgtggtaataatttgcaagatttgtgaaattgctgg
tttctctttatggcttagacatattccagttttgtacttcacagtaggaa
gaatctaaccatattctgtaaaactgtttcccctgctttgattagattta
ggatacttaatcaatttactcacttctggcgccatgttatattagttaaa
tctcatctgagtgcttactcataacatttcacattcatgggtaaaatatt
ttaagttattttggtaatcagttaaacagagtggttttactacacaagat
accccaaaccagaaacattactcactagtatgcattcatctaaaattaca
aatgtttttctctttcctttttttttttctcatccccatttttgattccc
cctttgcaatgttttgtgacagttttattagtttttctttccacctatca
atttcagatgaaaagaagagatgaggtcttgtaactctcctttcaattat
actttttgtggtttcagccagtgtgtgctgagcccttatcaggaactcgt
tttatttcactcaacagcatccatatgccctgatgttaacatttgatttt
aatatttttcagtaccatagacacccatccgaagagctgacccttttctg
catgtcagaagccctggaaatttccttcaagcggaatgcctctgttgaat
gcacttaatgttcttacttgcttggtagacttatgggctccagttatgta
gaaagttgcactcactcatatttaaactgaaagg

gaattccattagagacctctgggagacacaatagaaatcatccagaatta
tccacacacacacacacaaatacccatcacctggaatctatgcaccagct
tccatattggctgaaggctgttcccataagcctctgactacactctccac
tgagaagacaggctgaacactgttttaaaaacaaacaccacctccaccaa
ctccacagtttcaggtactttttgccagtggagcctgcaagcagaaaatg
tcactgctggggggtttcatttggagccagtagcacctgctacaaattct
gccccagccataaacacctgtaagtaaaactcagcaatgacggaagagct
ggcaggtagctgtgctcagactccaagaaggaagcctgtttgattagtcc
tctctgtgacttagggaacatgctatttctggtaaatgcacataaacctc
cttgagctccagtgtgggcctttgtcttgagttcatgattgagtcttagc
tgtgaataccaagaagtaggcttgtttaatcacagcagtggtcctctatt
gcaaattcccagattgctttaataatttgccatttataattagtctctta
aaatataccaccttttttaaaaaaaaaaatcaaacaggaatttcaaacaa
aataaagcctacagtttcaatcactttgaatttaaaaccttggcacttta
aacagaatgaagttaaaccaaccttccatttctgatgccagacattgcta
tgttgcataagttcaatttaaacactcacttgtggttttttttttttttt
ttgagagttcagtttccttttttctttgcagaagtaaggttattagatgt
ataaaatctttatggatttcttatttcttttactgtctgaaagcatggtg
gagacgaattcccacgaacactgcatattcatgctgcccaataaggatgc
gaatgatcgaattgcttaaactatggcctgttgccataccctccagctct
ctcttattcacatcaatggacttggaaatgaacggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_101415538_101416633
seq2: B6Ng01-177O10.b_48_1131

seq1  GAATTCACTTATAATAAAATATCTTTTACCATTACTTTTATAGCAAAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTATAATAAAATATCTTTTACCATTACTTTTATAGCAAAAAG  50

seq1  TACAAATAATATAAATGTACAGTAAGAAATGATTAATGAACCACATCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATATAAATGTACAGTAAGAAATGATTAATGAACCACATCTCT  100

seq1  CGCTCTTCCAGAATATTATGCAACAATTAAAATGTAATTTGTGAAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTCTTCCAGAATATTATGCAACAATTAAAATGTAATTTGTGAAAGAGT  150

seq1  ATAATCACACAGTAAGGTGTTGTTATATAATATTAATGAGACCTACAGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCACACAGTAAGGTGTTGTTATATAATATTAATGAGACCTACAGTT  200

seq1  TTAAAGCACACATATACTATTAAATCTCAATTTAGTCATATTTAATGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCACACATATACTATTAAATCTCAATTTAGTCATATTTAATGCTT  250

seq1  AAAAACTGTAAAATTATTAATAATAATCATATAAGAGAAAAGTGCATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTGTAAAATTATTAATAATAATCATATAAGAGAAAAGTGCATTTT  300

seq1  AAAGAATATAGTTTTGTGGTAATAATTTGCAAGATTTGTGAAATTGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATAGTTTTGTGGTAATAATTTGCAAGATTTGTGAAATTGCTGG  350

seq1  TTTCTCTTTATGGCTTAGACATATTCCAGTTTTGTACTTCACAGTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTTATGGCTTAGACATATTCCAGTTTTGTACTTCACAGTAGGAA  400

seq1  GAATCTAACCATATTCTGTAAAACTGTTTCCCCTGCTTTGATTAGATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTAACCATATTCTGTAAAACTGTTTCCCCTGCTTTGATTAGATTTA  450

seq1  GGATACTTAATCAATTTACTCACTTCTGGCGCCATGTTATATTAGTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATACTTAATCAATTTACTCACTTCTGGCGCCATGTTATATTAGTTAAA  500

seq1  TCTCATCTGAGTGCTTACTCATAACATTTCACATTCATGGGTAAAATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATCTGAGTGCTTACTCATAACATTTCACATTCATGGGTAAAATATT  550

seq1  TTAAGTTATTTTGGTAATCAGTTAAACAGAGTGGTTTTACTACACAAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTATTTTGGTAATCAGTTAAACAGAGTGGTTTTACTACACAAGAT  600

seq1  ACCCCAAACCAGAAACATTACTCACTAGTATGCATTCATCTAAAATTACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAAACCAGAAACATTACTCACTAGTATGCATTCATCTAAAATTACA  650

seq1  AATGTTTTTCTCTTTCC-TTTTTTTTTTCTCATCCCCATTTTTGATTCCC  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AATGTTTTTCTCTTTCCTTTTTTTTTTTCTCATCCCCATTTTTGATTCCC  700

seq1  CCTTTGCAATGTTTTGTGACAGTTTTATTAGTTTTTCTTTCCACCTATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCAATGTTTTGTGACAGTTTTATTAGTTTTTCTTTCCACCTATCA  750

seq1  ATTTCAGATGAAAAGAAGAGATGAGGTCTTGTAACTCTCCTTTCAATTAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGATGAAAAGAAGAGATGAGGTCTTGTAACTCTCCTTTCAATTAT  800

seq1  ACTTTTTGTGGTTTCAGCCAGTGTGTGCTGAGCCCTTATCAGGAACTCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGTGGTTTCAGCCAGTGTGTGCTGAGCCCTTATCAGGAACTCGT  850

seq1  TTTATTTCACTCAACAGCATCCATATGCCCTGATGTTTACATTTGATTTT  899
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TTTATTTCACTCAACAGCATCCATATGCCCTGATGTTAACATTTGATTTT  900

seq1  ATTATTTTTCAGTTACCATAGACA-CCATCCGAAAGAGCTGACCC-TGTC  947
      | |||||||||| ||||||||||| ||||||| |||||||||||| | ||
seq2  AATATTTTTCAG-TACCATAGACACCCATCCG-AAGAGCTGACCCTTTTC  948

seq1  TGCCATGTCCAGAAAACCCCTGG-AATTTCCTTC-AGCGG-ATGCCTTCT  994
      || ||||||   | || |||||| |||||||||| ||||| ||||| |||
seq2  TG-CATGTC---AGAAGCCCTGGAAATTTCCTTCAAGCGGAATGCC-TCT  993

seq1  GTTGGATGCACTATATGTTCCTACTTGCTTGGTAGAAATTAATGGGCTCC  1044
      |||| |||||||  |||||| ||||||||||||||  | | |||||||||
seq2  GTTGAATGCACTTAATGTTCTTACTTGCTTGGTAG--ACTTATGGGCTCC  1041

seq1  AGTAATGTAAGAAAGTTGCCAAACTTCACTCATATTTTAAAAACATGAAA  1094
      ||| |||| ||||||||||   || ||||||||||||   |||| |||||
seq2  AGTTATGT-AGAAAGTTGC---AC-TCACTCATATTT---AAAC-TGAAA  1082

seq1  GG  1096
      ||
seq2  GG  1084


seq1: chr14_101609299_101610352
seq2: B6Ng01-177O10.g_67_1105 (reverse)

seq1  TTCTCCCGTCATCTCCAAGT-CATTTTGATGAATAAGAAGAAAGCTGGAG  49
      ||||||  |||| ||||||| ||||    |||||||| ||| ||||||||
seq2  TTCTCCGTTCATTTCCAAGTCCATTGATGTGAATAAG-AGAGAGCTGGAG  49

seq1  GGATATGCAAAACAGGGGCAATAGTTTAAGACCAAATTCTGAATCA-TCG  98
      || ||||   ||||  ||| ||||||||||    |||||   |||| |||
seq2  GG-TATG-GCAACA--GGCCATAGTTTAAG---CAATTC--GATCATTCG  90

seq1  CATCCTTTATGGGCAGCCATGAATATGCAGTGTTCGTGGGAA-TCGTCTC  147
      |||||||  ||||||| ||||||||||||||||||||||||| |||||||
seq2  CATCCTTATTGGGCAG-CATGAATATGCAGTGTTCGTGGGAATTCGTCTC  139

seq1  CA-CATGCTTTCCAGACAGTAAAAAGAAAATAGAAATACATAAAGAATTT  196
      || |||||||| |||||||| ||||||||  |||||| ||||||| ||||
seq2  CACCATGCTTT-CAGACAGT-AAAAGAAATAAGAAATCCATAAAG-ATTT  186

seq1  TATACATCTTAATAACCTTACTTCTGCAAAGAAAAAGGAAAACTGAACTC  246
      |||||||| ||||||||||||||||||||||||||| | |||||||||||
seq2  TATACATC-TAATAACCTTACTTCTGCAAAGAAAAAAGGAAACTGAACTC  235

seq1  TC--AAAAAAAAAAAAAAACCACAAGTGAGTTGTTTTAAATTTGAAACTT  294
      ||  |||||||||||||||||||||||||||   ||||||||   |||||
seq2  TCAAAAAAAAAAAAAAAAACCACAAGTGAGT--GTTTAAATT--GAACTT  281

seq1  ATGCAAACATAGCAAATGTCTGGCATCAGAAATGGAAGGTTGGTTTTAAC  344
      |||| |||||||| ||||||||||||||||||||||||||||| ||||||
seq2  ATGC-AACATAGC-AATGTCTGGCATCAGAAATGGAAGGTTGG-TTTAAC  328

seq1  TTCATTCTGTTTAAAGTGCCAAGGTTTTAAATTCAAAGTGATTGAAACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCTGTTTAAAGTGCCAAGGTTTTAAATTCAAAGTGATTGAAACTG  378

seq1  TAGGCTTTATTTTGTTTGAAATTCCTGTTTGA-TTTTTTTTTTAAAAAAG  443
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGGCTTTATTTTGTTTGAAATTCCTGTTTGATTTTTTTTTTTAAAAAAG  428

seq1  GTGGTATATTTTAAGAGACTAATTATAAATGGCAAATTATTAAAGCAATC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTATATTTTAAGAGACTAATTATAAATGGCAAATTATTAAAGCAATC  478

seq1  TGGGAATTTGCAATAGAGGACCACTGCTGTGATTAAACAAGCCTACTTCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATTTGCAATAGAGGACCACTGCTGTGATTAAACAAGCCTACTTCT  528

seq1  TGGTATTCACAGCTAAGACTCAATCATGAACTCAAGACAAAGGCCCACAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATTCACAGCTAAGACTCAATCATGAACTCAAGACAAAGGCCCACAC  578

seq1  TGGAGCTCAAGGAGGTTTATGTGCATTTACCAGAAATAGCATGTTCCCTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAAGGAGGTTTATGTGCATTTACCAGAAATAGCATGTTCCCTA  628

seq1  AGTCACAGAGAGGACTAATCAAACAGGCTTCCTTCTTGGAGTCTGAGCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACAGAGAGGACTAATCAAACAGGCTTCCTTCTTGGAGTCTGAGCAC  678

seq1  AGCTACCTGCCAGCTCTTCCGTCATTGCTGAGTTTTACTTACAGGTGTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCTGCCAGCTCTTCCGTCATTGCTGAGTTTTACTTACAGGTGTTT  728

seq1  ATGGCTGGGGCAGAATTTGTAGCAGGTGCTACTGGCTCCAAATGAAACCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTGGGGCAGAATTTGTAGCAGGTGCTACTGGCTCCAAATGAAACCC  778

seq1  CCCAGCAGTGACATTTTCTGCTTGCAGGCTCCACTGGCAAAAAGTACCTG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCAGTGACATTTTCTGCTTGCAGGCTCCACTGGCAAAAAGTACCTG  828

seq1  AAACTGTGGAGTTGGTGGAGGTGGTGTTTGTTTTTAAAACAGTGTTCAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGGAGTTGGTGGAGGTGGTGTTTGTTTTTAAAACAGTGTTCAGC  878

seq1  CTGTCTTCTCAGTGGAGAGTGTAGTCAGAGGCTTATGGGAACAGCCTTCA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCTCAGTGGAGAGTGTAGTCAGAGGCTTATGGGAACAGCCTTCA  928

seq1  GCCAATATGGAAGCTGGTGCATAGATTCCAGGTGATGGGTATTTGTGTGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATATGGAAGCTGGTGCATAGATTCCAGGTGATGGGTATTTGTGTGT  978

seq1  GTGTGTGTGGATAATTCTGGATGATTTCTATTGTGTCTCCCAGAGGTCTC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGGATAATTCTGGATGATTTCTATTGTGTCTCCCAGAGGTCTC  1028

seq1  TAATGGAATTC  1054
      |||||||||||
seq2  TAATGGAATTC  1039


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