BAC Information

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BAC

Clone NameB6Ng01-177P03
Chromosome14 (Build37)
Map Location 117,890,947 - 117,892,006
singlet/doubletsinglet
Overlap geneGpc6
Upstream geneGpc5
Downstream gene5730405N03Rik, LOC100043822, Dct, Tgds, Gpr180, LOC100043824, LOC100043539, Sox21, LOC100043825, EG668814, LOC435422, Abcc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-177P03.bB6Ng01-177P03.g
ACCGA005074GA005075
length1,056480
definitionB6Ng01-177P03.b B6Ng01-177P03.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttaaatgaaatagaagctttgcttgggaactcattcaagtact
aaagaaataacaaaatgccaaacattgtattttaattattagtaatttta
cccctttgatatttccacataccccatcccactaactctgactttatggc
aagtgcatttatataaactactgtgtttcttgagttacggaaaccatatc
ttttattttatttttatggaaccaagtaagtgacctgaattctatgtggc
accttaaagatactgttatggaaacataactgtatattaccgtttagaag
caatgatggccagagacagctactcacgggaatggtctgatgaatatatt
caagtttgacttctgtgcccacacttttaaaccttatcaaataccccaag
acagctttaagaaaagaaaaacattccgattaaacttgagggacacaacc
cccccttaaaatgtgaatacacatttgcaagaggaaataccgagttcaaa
gagactgtctcccctcagccaatgattctctatggaaataacacttacct
gtgctgagtcttaagaagaaagcaaaccttagtttttaagctttaaaatc
ttttaaattcacatgatttcttgcttgcttatgaaatcgtatcactgata
taaacttcaactggcaacaagggacagcagtctcacaaaactttttcctt
cttcctccttctttagtggatcggggttgtatagaaatggctgacagtgt
tgctcagtgataaagtacttagctggcagacacagagtactcagtcctcc
tgggaatcacgaagcaaatgcaaaagtgtatatgcgattctccacagtcg
gaaattacctatagatatgatcgtgattagattcgaggcttagtttggct
tgcattatttttcgactggggcctcctatatagtctaaactcacccaaaa
ctcatgatcctcctgcccactgctttccagttggtagggttccaaatgaa
tcatcattcttacctgaaagagtttagattcgatttagatgatgatttat
atgatt

aatgtatttttaaataatcttctgaaatgatatcttcctatgttcattgt
cttttaaaatttagaagcgataacagatatgccaacattcaagctaaaga
cagtctattctaagaaacagttgtgaatataactaggatccaaattaaat
gatgacttaatccctgatcctgatgcaaatacttacggccaatccctgga
cttaggtaggggagggactcctagggaagagttaggggaagaattcaagg
agctgaagtggatggtaaccacacaaaagaccaacagtgtcaattaaccc
tgacccctcggagctcccagagactaagccaccaaccaaagagcatacag
gagctggtccatggcccctggcatgtatgtagccttttctggcctcagtg
ggagagagtaggtctaatcctgtagagacttgatgccctatggaaggggg
atggctgaggatgatctgggggtggtgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_117890947_117892006
seq2: B6Ng01-177P03.b_38_1093

seq1  GAATTCTTTAAATGAAATAGAAGCTTTGCTTGGGAACTCATTCAAGTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAAATGAAATAGAAGCTTTGCTTGGGAACTCATTCAAGTACT  50

seq1  AAAGAAATAACAAAATGCCAAACATTGTATTTTAATTATTAGTAATTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATAACAAAATGCCAAACATTGTATTTTAATTATTAGTAATTTTA  100

seq1  CCCCTTTGATATTTCCACATACCCCATCCCACTAACTCTGACTTTATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTGATATTTCCACATACCCCATCCCACTAACTCTGACTTTATGGC  150

seq1  AAGTGCATTTATATAAACTACTGTGTTTCTTGAGTTACGGAAACCATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCATTTATATAAACTACTGTGTTTCTTGAGTTACGGAAACCATATC  200

seq1  TTTTATTTTATTTTTATGGAACCAAGTAAGTGACCTGAATTCTATGTGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTTATTTTTATGGAACCAAGTAAGTGACCTGAATTCTATGTGGC  250

seq1  ACCTTAAAGATACTGTTATGGAAACATAACTGTATATTACCGTTTAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAAAGATACTGTTATGGAAACATAACTGTATATTACCGTTTAGAAG  300

seq1  CAATGATGGCCAGAGACAGCTACTCACGGGAATGGTCTGATGAATATATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATGGCCAGAGACAGCTACTCACGGGAATGGTCTGATGAATATATT  350

seq1  CAAGTTTGACTTCTGTGCCCACACTTTTAAACCTTATCAAATACCCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTGACTTCTGTGCCCACACTTTTAAACCTTATCAAATACCCCAAG  400

seq1  ACAGCTTTAAGAAAAGAAAAACATTCCGATTAAACTTGAGGGACACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTTAAGAAAAGAAAAACATTCCGATTAAACTTGAGGGACACAACC  450

seq1  CCCCCTTAAAATGTGAATACACATTTGCAAGAGGAAATACCGAGTTCAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTAAAATGTGAATACACATTTGCAAGAGGAAATACCGAGTTCAAA  500

seq1  GAGACTGTCTCCCCTCAGCCAATGATTCTCTATGGAAATAACACTTACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGTCTCCCCTCAGCCAATGATTCTCTATGGAAATAACACTTACCT  550

seq1  GTGCTGAGTCTTAAGAAGAAAGCAAACCTTAGTTTTTAAGCTTTAAAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAGTCTTAAGAAGAAAGCAAACCTTAGTTTTTAAGCTTTAAAATC  600

seq1  TTTTAAATTCACATGATTTCTTGCTTGCTTATGAAATCGTATCACTGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATTCACATGATTTCTTGCTTGCTTATGAAATCGTATCACTGATA  650

seq1  TAAACTTCAACTGGCAACAAGGGACAGCAGTCTCACAAAACTTTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTTCAACTGGCAACAAGGGACAGCAGTCTCACAAAACTTTTTCCTT  700

seq1  CTTCCTCCTTCTTTAGTGGATCGGGGTTGTATAGAAATGGCTGACAGTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTTCTTTAGTGGATCGGGGTTGTATAGAAATGGCTGACAGTGT  750

seq1  TGCTCAGTGATAAAGTACTTAGCTGGCAGACACAGAGTACTCAGTCCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTGATAAAGTACTTAGCTGGCAGACACAGAGTACTCAGTCCTCC  800

seq1  TGGGAATCACGAAGCAAATGCAAAAGTGTATATGCGATTCTCCACAGTCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCACGAAGCAAATGCAAAAGTGTATATGCGATTCTCCACAGTCG  850

seq1  GAAATTACCTATAGATATGATCGTGATTTAGATTCGAGGCTTAGTTTGGC  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAATTACCTATAGATATGATCGTGA-TTAGATTCGAGGCTTAGTTTGGC  899

seq1  TTGCATTATTTTTCGACTGGGGCCTCCTATATAGTCTAGACTCACCCAAA  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTGCATTATTTTTCGACTGGGGCCTCCTATATAGTCTAAACTCACCCAAA  949

seq1  ACTCATGATCCTCCTGCCCACTGCTTTCCAGTTGGTAGGGTTCCAAATGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGATCCTCCTGCCCACTGCTTTCCAGTTGGTAGGGTTCCAAATGA  999

seq1  AATTCATCATTCTTACCTGAAAGAGTTTTAGATTCGATTTTAGATGATGA  1050
      |  |||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  A--TCATCATTCTTACCTGAAAGAG-TTTAGATTCGA-TTTAGATGATGA  1045

seq1  -TTATATGATT  1060
       ||||||||||
seq2  TTTATATGATT  1056


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