BAC Information

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BAC

Clone NameB6Ng01-178J06
Chromosome14 (Build37)
Map Location 100,738,336 - 100,844,029
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043400, LOC100043789, LOC668671, LOC668672, EG546623, Klf12
Downstream geneLOC100043413, EG668683, EG668684, 1700110M21Rik, LOC100043421, LOC382936, Tbc1d4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-178J06.bB6Ng01-178J06.g
ACCGA005529GA005530
length1,202401
definitionB6Ng01-178J06.b B6Ng01-178J06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,738,336 - 100,739,232)(100,843,623 - 100,844,029)
sequence
gaattctcaactgaggaataccaaagggctgagaagcacttgaaaaaatg
ttcaacatccataatcatcagggaaatgcaaataaaaacaaccctgagat
tctacctcacaccagtcagaatggctaggatcaaaaattcaggtgacagc
agatgctggtgaggatgtggagaaagagaaacattcctccattggtggtg
ggattgcaagcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtattaccggtagattcagcaatacctctcctgggc
atatacccagaagatgttccaactggtaataaggacacatgctccactat
gttcatatcagccctatttataatagccagaagctggaaagaacccagat
gtccctcaacagaggaatggatacagaaaatgtggtatatttacacaatg
gagtactactcagctattaaaaagaatgaatttatggaattcttgggcaa
atggatgaatctggaggatatcatcctgagtgaggtcaatcacaagagat
gtcacttgatatgcactcactgataagtggatattaacccagaaacctag
aatacccaagatacaatttttaaaacacaagtaattctagaaggaagacc
aacatggggctacttcattgctctctagaatagggaataaaatatccatg
gaaggagttgcagagacaaaatttggagctaagacgaaaggatggaccaa
actcagggtttttataagagaaagtgttcttcagtgctaagccatctctc
ctatctgtcaatttgacttaatctcaaaaaagtaagtttaaggtgattat
gcatgaatagccagttgcttgccattctcatcatgtcttctctgtctact
ctgcataataggaaaggtctctagaccttgactttttcttttcctttgac
atagtaaaaatctagggtgccagcttgaaccattgggatccaaccctcca
tccattcctttcaaagggctatagattctgtgaccataacttattgtgaa
gcaaaagagaggaggcaaggagtctcatgcccatagcaagaatctcttga
accagctgcagggcctgagaaatatccgttaacagaagttaattaaagca
tggtggagtgttaccttcatagatgtaatgacttgttgactgtccttagg
ag

ttgtccatgtgtaaaaacaaacaaccactatctcaaaaagcatccgacct
tacagagaagaatgtgagttagaaaactcttcttaccccacacagccagg
agatgcccaaagagcaagggcttgttaagagtaagcgggcagcatgagga
aaaatatttcaaacatgctttctgtttgaccttggaatttcacttatgga
aattggtcatagggaaataattagaggcaagtgaagagattcagctccaa
agatataataaaagagaactatgcgacctaagagggaaaagggactgtga
ggtgaagcatcttcctcctgcttgtggagaggcaagaactgtagaagcta
tgtctaaatgagccctaggttggtgtgtgtgtgtgtgtgtgtgtgtgtgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_100738336_100739232
seq2: B6Ng01-178J06.b_346_1244

seq1  TACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCAGAAGATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTT  50

seq1  CATATCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAGCCCTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGTC  100

seq1  CCTCAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAACAGAGGAATGGATACAGAAAATGTGGTATATTTACACAATGGAG  150

seq1  TACTACTCAGCTATTAAAAAGAATGAATTTATGGAATTCTTGGGCAAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTCAGCTATTAAAAAGAATGAATTTATGGAATTCTTGGGCAAATG  200

seq1  GATGAATCTGGAGGATATCATCCTGAGTGAGGTCAATCACAAGAGATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCTGGAGGATATCATCCTGAGTGAGGTCAATCACAAGAGATGTC  250

seq1  ACTTGATATGCACTCACTGATAAGTGGATATTAACCCAGAAACCTAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATATGCACTCACTGATAAGTGGATATTAACCCAGAAACCTAGAAT  300

seq1  ACCCAAGATACAATTTTTAAAACACAAGTAATTCTAGAAGGAAGACCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGATACAATTTTTAAAACACAAGTAATTCTAGAAGGAAGACCAAC  350

seq1  ATGGGGCTACTTCATTGCTCTCTAGAATAGGGAATAAAATATCCATGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCTACTTCATTGCTCTCTAGAATAGGGAATAAAATATCCATGGAA  400

seq1  GGAGTTGCAGAGACAAAATTTGGAGCTAAGACGAAAGGATGGACCAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTGCAGAGACAAAATTTGGAGCTAAGACGAAAGGATGGACCAAACT  450

seq1  CAGGGTTTTTATAAGAGAAAGTGTTCTTCAGTGCTAAGCCATCTCTCCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTTTTTATAAGAGAAAGTGTTCTTCAGTGCTAAGCCATCTCTCCTA  500

seq1  TCTGTCAATTTGACTTAATCTCAAAAAAGTAAGTTTAAGGTGATTATGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAATTTGACTTAATCTCAAAAAAGTAAGTTTAAGGTGATTATGCA  550

seq1  TGAATAGCCAGTTGCTTGCCATTCTCATCATGTCTTCTCTGTCTACTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAGCCAGTTGCTTGCCATTCTCATCATGTCTTCTCTGTCTACTCTG  600

seq1  CAT-ATAGGAAAGGTCTCTAGACCTTGACTTTTTCTTTTCCTTTGACATA  649
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAGGAAAGGTCTCTAGACCTTGACTTTTTCTTTTCCTTTGACATA  650

seq1  GTAAAAATCTAGGGTGCCAGCTTGAACCATT-GGATCCAACCCTCCATCC  698
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTAAAAATCTAGGGTGCCAGCTTGAACCATTGGGATCCAACCCTCCATCC  700

seq1  ATTCCTTTCAAA-GGCTATAGATTCTGTGACCCATAACTTATTGTGAAGC  747
      |||||||||||| ||||||||||||||||| |||||||||||||||||||
seq2  ATTCCTTTCAAAGGGCTATAGATTCTGTGA-CCATAACTTATTGTGAAGC  749

seq1  AAAAGAGA-GAGGCAAGGAAGTCTCATGCCCATAGCAAGAACCCCTTGAA  796
      |||||||| ||||||||| |||||||||||||||||||||| | ||||||
seq2  AAAAGAGAGGAGGCAAGG-AGTCTCATGCCCATAGCAAGAATCTCTTGAA  798

seq1  -CAGCTGCAGGGGCTGAGAAATATCCCGTAACAGAGTTAAATAAAAGCAT  845
       ||||||||||| |||||||||||||  |||||||  | ||| |||||||
seq2  CCAGCTGCAGGGCCTGAGAAATATCCGTTAACAGAAGTTAATTAAAGCAT  848

seq1  -GTGGTGTGTAAC--TCATAGATGTAATATGACTGGTTGACTTGTTCCTT  892
       |||| |||| ||  |||||||||||  |||||| |||||||   |||||
seq2  GGTGGAGTGTTACCTTCATAGATGTA--ATGACTTGTTGACT--GTCCTT  894

seq1  AGGAG  897
      |||||
seq2  AGGAG  899


seq1: chr14_100843623_100844029
seq2: B6Ng01-178J06.g_65_471 (reverse)

seq1  CACACACACACACACACACACACACACACCAACCTAGGGCTCATTTAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACCAACCTAGGGCTCATTTAGAC  50

seq1  ATAGCTTCTACAGTTCTTGCCTCTCCACAAGCAGGAGGAAGATGCTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTCTACAGTTCTTGCCTCTCCACAAGCAGGAGGAAGATGCTTCAC  100

seq1  CTCACAGTCCCTTTTCCCTCTTAGGTCGCATAGTTCTCTTTTATTATATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCCCTTTTCCCTCTTAGGTCGCATAGTTCTCTTTTATTATATC  150

seq1  TTTGGAGCTGAATCTCTTCACTTGCCTCTAATTATTTCCCTATGACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGCTGAATCTCTTCACTTGCCTCTAATTATTTCCCTATGACCAAT  200

seq1  TTCCATAAGTGAAATTCCAAGGTCAAACAGAAAGCATGTTTGAAATATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATAAGTGAAATTCCAAGGTCAAACAGAAAGCATGTTTGAAATATTT  250

seq1  TTCCTCATGCTGCCCGCTTACTCTTAACAAGCCCTTGCTCTTTGGGCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCATGCTGCCCGCTTACTCTTAACAAGCCCTTGCTCTTTGGGCATC  300

seq1  TCCTGGCTGTGTGGGGTAAGAAGAGTTTTCTAACTCACATTCTTCTCTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGCTGTGTGGGGTAAGAAGAGTTTTCTAACTCACATTCTTCTCTGT  350

seq1  AAGGTCGGATGCTTTTTGAGATAGTGGTTGTTTGTTTTTACACATGGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCGGATGCTTTTTGAGATAGTGGTTGTTTGTTTTTACACATGGACA  400

seq1  AGAATTC  407
      |||||||
seq2  AGAATTC  407


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