BAC Information

Click to search

BAC

Clone NameB6Ng01-179E17
Chromosome14 (Build37)
Map Location 72,837,452 - 72,981,936
singlet/doubletdoublet
Overlap geneLOC668482, LOC675957, Fndc3a
Upstream geneLOC100043136, LOC668477
Downstream geneLOC100043721, LOC100043723, LOC668487, LOC668489, Cysltr2, LOC100043149, Rcbtb2, Rb1, P2ry5, Itm2b, LOC100043152, Med4, Nudt15, Sucla2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179E17.bB6Ng01-179E17.g
ACCGA006053GA006054
length1,176855
definitionB6Ng01-179E17.b B6Ng01-179E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,980,782 - 72,981,936)(72,837,452 - 72,838,305)
sequence
gaattcatttctgagtccagcaatcaatacactctttgtagctcttttct
cttttcccccttcccacctcccgcccccataaggtcatactctgctttca
tggcttgattttaatctcttactatgtatggcttgtgttcctgtgtcata
ttattcttaaagaaattaacctacttattcattcatccagaaaatactta
ctatgctattcctatatgttaataagtaaaaaaatgtgtagacaaatcta
gtatagaaagtagagtaatgtggaaagtaatattttacattgaagcaatg
aagaaaatgccactcggcttccatagagggagacaagtgcagacagcgca
tggacacgaggcaggagcaaggaccaatgtcagcataccgtggtgaggga
tcaaccaggcttcccagagctttaccagccaggacaaggccattttgcat
tgaataaaaatgcccctcagcttacaaagcaaagaacttcacctctctgc
ccctagaagacatggatcagtataacaagaaacacacttggagcgttttg
cttatttttaaacaaattaaaagttgttgccattgttaacagcctctcca
tgaaggtgttgtagattgttctgattttgcctgtttagaaagggtgaatg
catcagtcctcatcaactaggctgctcatggctctcttgttctgtgacac
ctcccgctgatacattcaagcactcgagctctctctcactctagcttgtt
tcctcttaagaatggaccatgtagatggaataaaggtagaagaacacagt
agctgacaaagtttgctgatgtctgtctctttccagagtaattgagatgc
acatgtgttactcaattcctatagctcgtgacgtacccgtttcccctgtt
ttacagataggaactgaaacaagcaagtaagaagtagtaagagccagggt
ttggagtgcaagcaatccctagagctcctgacctagaacttctcaagggg
ttcactttgagaaaaaagaatagtggccttcacatgggccattcattgtg
ataagtgtttcactgtccagtggtggagggcctggcctgtggggtgaatc
acttccatgggtttctggcctgtttcttagaatggctttggtgtggcagc
agttacctggtgtgtcagcaatgcca
gaattccataggctttgccattctccatgcatcacagggctatggctcgg
aaccatcttgagacagaacctaatgtttaagactggggagtcaataggga
gacacatgtctaggctgtctccttctgtgtcatagcatcaggttcaacaa
aacacttttccaaggggacttctgttgcccactttcaggggtataggtgg
aggaaacagagaaagaaggaaaattgatcccacaaatcagagagtctaag
gccagcctgccatagcttaaggggacagacattcagggaaggcagtggtg
gaagaagactgaggtgacaagccaaaactcaagacagcagaatgcttggc
tcacgtgtgtagagcagatatctctgaaatgaagacaagaaaagcaataa
cgtaaataaaaagttcatcactgaaaagagcaatgacatgtatatatatt
tataaagaatgtgtgaaaactcagattcctaaaagcagaaatgaaaatag
gggcataatcactaaattcttcacaaaacaagaagaatgtattagtacca
tgacaatcccaagccaagaaatcacataactaaggtgcaatggatgaact
gttagaaccagaaaacctaccaaaactgactcatgaagaaatagaaaata
cagaagatacataaccagtaaggagagcaagattccagaaaaaaaaatct
ttacatctttggtcaaacaatttcagcaaagtttccaagaccacgtgcag
tctttttagtaaatgattctggaaaaactggatgttcacatgtcaaggga
cagatctgtgttcttacctaattccacttccagaagtaaagcaaagtggg
actaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_72980782_72981936
seq2: B6Ng01-179E17.b_41_1216 (reverse)

seq1  TGGCACTGCTG-CACA-CAGGTAAACTGCTGCACAACCAAAGCCA-TCTA  47
      ||||| ||||| |||| ||||| |||||||||   |||||||||| ||||
seq2  TGGCATTGCTGACACACCAGGT-AACTGCTGCCACACCAAAGCCATTCTA  49

seq1  AGAAACCAGGCCAGAAACCCA--GGAGTGA-TCA-CCCACAGACCA-GCC  92
      ||||| |||||||||||||||  | ||||| ||| ||||||| ||| |||
seq2  AGAAA-CAGGCCAGAAACCCATGGAAGTGATTCACCCCACAGGCCAGGCC  98

seq1  CTC--ACACT-GACAGTG-AACAC-TATCACAATG-ATGG-CCATGTGA-  134
      |||   |||| ||||||| ||||| |||||||||| |||| |||||||| 
seq2  CTCCACCACTGGACAGTGAAACACTTATCACAATGAATGGCCCATGTGAA  148

seq1  -GCC-CTA-TCTTTTTTCTC-AAGTGAACCCCTTGAGAAGTTCTAGGTCA  180
       ||| ||| ||||||||||| |||||||||||||||||||||||||||||
seq2  GGCCACTATTCTTTTTTCTCAAAGTGAACCCCTTGAGAAGTTCTAGGTCA  198

seq1  -GAGCTCTAGGGATTGCTTGCACTCC-AACCCTGGCTCTTACTACTTCTT  228
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGAGCTCTAGGGATTGCTTGCACTCCAAACCCTGGCTCTTACTACTTCTT  248

seq1  ACTTGCTTGTTTCAGTTCCTATCTGTAAAACAGGGGAAAC-GGTACGTCA  277
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTGCTTGTTTCAGTTCCTATCTGTAAAACAGGGGAAACGGGTACGTCA  298

seq1  CGAGCTATAGGAATTGAGTAACACATGTGCATCTCAATTACTCTGGAAAG  327
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGCTATAGGAATTGAGTAACACATGTGCATCTCAATTACTCTGGAAAG  348

seq1  AGACAGACATCAGCAAACTTTGTCAGCTACTGTGTTCTTCTACCTTTATT  377
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGACATCAGCAAACTTTGTCAGCTACTGTGTTCTTCTACCTTTATT  398

seq1  CCATCTACATGGTCCATTCTTAAGAGGAAACAAGCTAGAGTGAGAGAGAG  427
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTACATGGTCCATTCTTAAGAGGAAACAAGCTAGAGTGAGAGAGAG  448

seq1  CTCGAGTGCTTGAATGTATCAGCGGGAGGTGTCACAGAACAAGAGAGCCA  477
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTGCTTGAATGTATCAGCGGGAGGTGTCACAGAACAAGAGAGCCA  498

seq1  TGAGCAGCCTAGTTGATGAGGACTGATGCATTCACCCTTTCTAAACAGGC  527
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGCCTAGTTGATGAGGACTGATGCATTCACCCTTTCTAAACAGGC  548

seq1  AAAATCAGAACAATCTACAACACCTTCATGGAGAGGCTGTTAACAATGGC  577
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCAGAACAATCTACAACACCTTCATGGAGAGGCTGTTAACAATGGC  598

seq1  AACAACTTTTAATTTGTTTAAAAATAAGCAAAACGCTCCAAGTGTGTTTC  627
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACTTTTAATTTGTTTAAAAATAAGCAAAACGCTCCAAGTGTGTTTC  648

seq1  TTGTTATACTGATCCATGTCTTCTAGGGGCAGAGAGGTGAAGTTCTTTGC  677
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTATACTGATCCATGTCTTCTAGGGGCAGAGAGGTGAAGTTCTTTGC  698

seq1  TTTGTAAGCTGAGGGGCATTTTTATTCAATGCAAAATGGCCTTGTCCTGG  727
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTAAGCTGAGGGGCATTTTTATTCAATGCAAAATGGCCTTGTCCTGG  748

seq1  CTGGTAAAGCTCTGGGAAGCCTGGTTGATCCCTCACCACGGTATGCTGAC  777
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAAAGCTCTGGGAAGCCTGGTTGATCCCTCACCACGGTATGCTGAC  798

seq1  ATTGGTCCTTGCTCCTGCCTCGTGTCCATGCGCTGTCTGCACTTGTCTCC  827
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCCTTGCTCCTGCCTCGTGTCCATGCGCTGTCTGCACTTGTCTCC  848

seq1  CTCTATGGAAGCCGAGTGGCATTTTCTTCATTGCTTCAATGTAAAATATT  877
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATGGAAGCCGAGTGGCATTTTCTTCATTGCTTCAATGTAAAATATT  898

seq1  ACTTTCCACATTACTCTACTTTCTATACTAGATTTGTCTACACATTTTTT  927
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCCACATTACTCTACTTTCTATACTAGATTTGTCTACACATTTTTT  948

seq1  TACTTATTAACATATAGGAATAGCATAGTAAGTATTTTCTGGATGAATGA  977
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATTAACATATAGGAATAGCATAGTAAGTATTTTCTGGATGAATGA  998

seq1  ATAAGTAGGTTAATTTCTTTAAGAATAATATGACACAGGAACACAAGCCA  1027
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAGGTTAATTTCTTTAAGAATAATATGACACAGGAACACAAGCCA  1048

seq1  TACATAGTAAGAGATTAAAATCAAGCCATGAAAGCAGAGTATGACCTTAT  1077
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAGTAAGAGATTAAAATCAAGCCATGAAAGCAGAGTATGACCTTAT  1098

seq1  GGGGGCGGGAGGTGGGAAGGGGGAAAAGAGAAAAGAGCTACAAAGAGTGT  1127
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGCGGGAGGTGGGAAGGGGGAAAAGAGAAAAGAGCTACAAAGAGTGT  1148

seq1  ATTGATTGCTGGACTCAGAAATGAATTC  1155
      ||||||||||||||||||||||||||||
seq2  ATTGATTGCTGGACTCAGAAATGAATTC  1176

seq1: chr14_72837452_72838305
seq2: B6Ng01-179E17.g_66_920

seq1  GAATTCCATAGGCTTTGCCATTCTCCATGCATCACAGGGCTATGGCTCGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAGGCTTTGCCATTCTCCATGCATCACAGGGCTATGGCTCGG  50

seq1  AACCATCTTGAGACAGAACCTAATGTTTAAGACTGGGGAGTCAATAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCTTGAGACAGAACCTAATGTTTAAGACTGGGGAGTCAATAGGGA  100

seq1  GACACATGTCTAGGCTGTCTCCTTCTGTGTCATAGCATCAGGTTCAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGTCTAGGCTGTCTCCTTCTGTGTCATAGCATCAGGTTCAACAA  150

seq1  AACACTTTTCCAAGGGGACTTCTGTTGCCCACTTTCAGGGGTATAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTTTCCAAGGGGACTTCTGTTGCCCACTTTCAGGGGTATAGGTGG  200

seq1  AGGAAACAGAGAAAGAAGGAAAATTGATCCCACAAATCAGAGAGTCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAACAGAGAAAGAAGGAAAATTGATCCCACAAATCAGAGAGTCTAAG  250

seq1  GCCAGCCTGCCATAGCTTAAGGGGACAGACATTCAGGGAAGGCAGTGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCTGCCATAGCTTAAGGGGACAGACATTCAGGGAAGGCAGTGGTG  300

seq1  GAAGAAGACTGAGGTGACAAGCCAAAACTCAAGACAGCAGAATGCTTGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGACTGAGGTGACAAGCCAAAACTCAAGACAGCAGAATGCTTGGC  350

seq1  TCACGTGTGTAGAGCAGATATCTCTGAAATGAAGACAAGAAAAGCAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGTGTAGAGCAGATATCTCTGAAATGAAGACAAGAAAAGCAATAA  400

seq1  CGTAAATAAAAAGTTCATCACTGAAAAGAGCAATGACATGTATATATATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAATAAAAAGTTCATCACTGAAAAGAGCAATGACATGTATATATATT  450

seq1  TATAAAGAATGTGTGAAAACTCAGATTCCTAAAAGCAGAAATGAAAATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGAATGTGTGAAAACTCAGATTCCTAAAAGCAGAAATGAAAATAG  500

seq1  GGGCATAATCACTAAATTCTTCACAAAACAAGAAGAATGTATTAGTACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATAATCACTAAATTCTTCACAAAACAAGAAGAATGTATTAGTACCA  550

seq1  TGACAATCCCAAGCCAAGAAATCACATAACTAAGGTGCAATGGATGAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCCCAAGCCAAGAAATCACATAACTAAGGTGCAATGGATGAACT  600

seq1  GTTAGAACCAGAAAACCTACCAAAACTGACTCATGAAGAAATAGAAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGAACCAGAAAACCTACCAAAACTGACTCATGAAGAAATAGAAAATA  650

seq1  CAGAAGATACATAACCAGTAAGGAGAGCAAGATTCCAGAAAAAAAAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGATACATAACCAGTAAGGAGAGCAAGATTCCAGAAAAAAAAATCT  700

seq1  TTACATCTTTGGTCAAACAATTTCAGCAAAGTTTCCAAGACCACGTGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTTTGGTCAAACAATTTCAGCAAAGTTTCCAAGACCACGTGCAG  750

seq1  TCTTTTTAGTAAATGATTCTGGAAAAACTGGATGTTCACATGTCAAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTAGTAAATGATTCTGGAAAAACTGGATGTTCACATGTCAAGGGA  800

seq1  CAGATCTGTGTTCTTACCTAATTCCACTTCCAGAAGTAAAGCAAAGT-GG  849
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CAGATCTGTGTTCTTACCTAATTCCACTTCCAGAAGTAAAGCAAAGTGGG  850

seq1  ACTAA  854
      |||||
seq2  ACTAA  855