BAC Information

Click to search

BAC

Clone NameB6Ng01-179N11
Chromosome14 (Build37)
Map Location 32,354,604 - 32,504,181
singlet/doubletdoublet
Overlap geneColq, Hacl1, Btd
Upstream geneTkt, Prkcd, EG665466, Rft1, Sfmbt1, Tmem110, Mustn1, Itih4, Itih3, Itih1, Nek4, Spcs1, Glt8d1, Gnl3, Pbrm1, EG432834, Nt5dc2, Stab1, Nisch, Tnnc1, Sema3g, Phf7, Bap1, Dnahc1, Capn7, Sh3bp5, Mettl6, Eaf1
Downstream geneAnkrd28, Galntl2, Dph3, Oxnad1, Msmb, Ncoa4, Timm23, Parg, LOC665601, Ogdhl, 1700024G13Rik, Chat, Slc18a3, LOC100040834, EG665618, Ercc6, 9430077A04Rik, Prrxl1, 3425401B19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179N11.bB6Ng01-179N11.g
ACCGA006448GA006449
length345813
definitionB6Ng01-179N11.b B6Ng01-179N11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,503,837 - 32,504,181)(32,354,604 - 32,355,411)
sequence
aaggcaaaggtgcatctggagaagagtggtctcctttcagccgagcagcc
atgaatgtgaaggacatgtggggatagctggacgttggtggcccacccat
ttgatctcagcactcggagcattgcaggaagaggccatgagaactacagt
caaaggttgggcatcggcatctcggtttaggactcaatctctgttcttcc
tcaggtgtggtgctgctcatggaacaaggtgcccagagctggctggaggc
tctgttcagggagggggcctgtgcttcactacaagttctcaagatctggg
tagaatgatggccaaggccatgggtgtggggagcgggtgtggcgg
gaattccagagaccagtagctggtgaggaccagggccaagctgacctgtc
agcttagcaacaggatgaacctgtccccctccaactcactcagcagttaa
gagcgtttactggctttccagaggatccaagctcagttcccagcactata
tcaggtggctcacatggcctgtaactccaggcagttgtgaatgatcacaa
aattttaaccccgggaggatctaagacctcccaccttcacaggcacacat
acatgaagacacacacacatacacacatactcgggcacacacacacacac
ttaaaaatgaaacctttaagaaagcattttccttaagtccatgttagggt
caatgattccacatggcaatggaggaaccattaacctggttttcacacac
acacacacacacacacacacacccctgggctgtttagaggggcccaggga
atatcttgtttagccaggagaaagcatcaacataaaaaatatgaatttta
aaaaagaggtctttggaaggaagtgtggctcttctctttaccagctggaa
gcagctagggatttctttgatctaattcctctcctaagacctaatttaca
gttatcacatcagcccggtcccaaagcagcctgccacgaaagggggaaga
cggcgctctctatgccaagcctggtaatggcgcacaagccagagaacctg
tcaaatttaatttttatagttgaccaatgagtctttgatgattactgttg
cagggaatgagaatctagacaaaacatcttaaggtactttcttctctttt
tgaagttttgcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_32503837_32504181
seq2: B6Ng01-179N11.b_52_396 (reverse)

seq1  CCGCCACACCCGCTCCCCACACCCATGGCCTTGGCCATCATTCTACCCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCACACCCGCTCCCCACACCCATGGCCTTGGCCATCATTCTACCCAG  50

seq1  ATCTTGAGAACTTGTAGTGAAGCACAGGCCCCCTCCCTGAACAGAGCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGAGAACTTGTAGTGAAGCACAGGCCCCCTCCCTGAACAGAGCCTC  100

seq1  CAGCCAGCTCTGGGCACCTTGTTCCATGAGCAGCACCACACCTGAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCAGCTCTGGGCACCTTGTTCCATGAGCAGCACCACACCTGAGGAAG  150

seq1  AACAGAGATTGAGTCCTAAACCGAGATGCCGATGCCCAACCTTTGACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATTGAGTCCTAAACCGAGATGCCGATGCCCAACCTTTGACTGT  200

seq1  AGTTCTCATGGCCTCTTCCTGCAATGCTCCGAGTGCTGAGATCAAATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTCATGGCCTCTTCCTGCAATGCTCCGAGTGCTGAGATCAAATGGG  250

seq1  TGGGCCACCAACGTCCAGCTATCCCCACATGTCCTTCACATTCATGGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCACCAACGTCCAGCTATCCCCACATGTCCTTCACATTCATGGCTG  300

seq1  CTCGGCTGAAAGGAGACCACTCTTCTCCAGATGCACCTTTGCCTT  345
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGCTGAAAGGAGACCACTCTTCTCCAGATGCACCTTTGCCTT  345

seq1: chr14_32354604_32355411
seq2: B6Ng01-179N11.g_69_881

seq1  GAATTCCAGAGACCAGTAGCTGGTGAGGACCAGGGCCAAGCTGACCTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAGACCAGTAGCTGGTGAGGACCAGGGCCAAGCTGACCTGTC  50

seq1  AGCTTAGCAACAGGATGAACCTGTCCCCCTCCAACTCACTCAGCAGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTAGCAACAGGATGAACCTGTCCCCCTCCAACTCACTCAGCAGTTAA  100

seq1  GAGCGTTTACTGGCTTTCCAGAGGATCCAAGCTCAGTTCCCAGCACTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGTTTACTGGCTTTCCAGAGGATCCAAGCTCAGTTCCCAGCACTATA  150

seq1  TCAGGTGGCTCACATGGCCTGTAACTCCAGGCAGTTGTGAATGATCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGGCTCACATGGCCTGTAACTCCAGGCAGTTGTGAATGATCACAA  200

seq1  AATTTTAACCCCGGGAGGATCTAAGACCTCCCACCTTCACAGGCACACAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAACCCCGGGAGGATCTAAGACCTCCCACCTTCACAGGCACACAT  250

seq1  ACATGAAGACACACACACATACACACATACTCGGGCACACACACACACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAGACACACACACATACACACATACTCGGGCACACACACACACAC  300

seq1  TTAAAAATGAAACCTTTAAGAAAGCATTTTCCTTAAGTCCATGTTAGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGAAACCTTTAAGAAAGCATTTTCCTTAAGTCCATGTTAGGGT  350

seq1  CAATGATTCCACATGGCAATGGAGGAACCATTAACCTGGTTTTCACACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTCCACATGGCAATGGAGGAACCATTAACCTGGTTTTCACACAC  400

seq1  ACACACACACACACACACACACCCCTGGGCTGTTTAGAGGGGCCCAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACCCCTGGGCTGTTTAGAGGGGCCCAGGGA  450

seq1  ATATCTTGTTTAGCCAGGAGAAAGCATCAACATAAAAAATATGAATTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTGTTTAGCCAGGAGAAAGCATCAACATAAAAAATATGAATTTTA  500

seq1  AAAAAGAGGTCTTTGGAAGGAAGTGTGGCTCTTCTCTTTACCAGCTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGTCTTTGGAAGGAAGTGTGGCTCTTCTCTTTACCAGCTGGAA  550

seq1  GCAGCTAGGGATTTC-TTGATCTAATTCCTCTCCTAAGACCTAA-TTACA  598
      ||||||||||||||| |||||||||||||||||||||||||||| |||||
seq2  GCAGCTAGGGATTTCTTTGATCTAATTCCTCTCCTAAGACCTAATTTACA  600

seq1  GTTATCACATCAGCCCGGTCCCAAAGCAGCCTGCCACGAAAGGGGGAAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCACATCAGCCCGGTCCCAAAGCAGCCTGCCACGAAAGGGGGAAGA  650

seq1  CGGCGCTCTCTATGCCAAGCCTGGTAAATGGCGCACAAGCCAGAGAACCT  698
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CGGCGCTCTCTATGCCAAGCCTGGT-AATGGCGCACAAGCCAGAGAACCT  699

seq1  GTCAAATTTAA-TTTTATAG-TGACCAATGAGTCTTTGATGATTACTGTT  746
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GTCAAATTTAATTTTTATAGTTGACCAATGAGTCTTTGATGATTACTGTT  749

seq1  GCAGGGAATGAGAATCTAGACAAAACATCTTAAGGTACTTTCTTCTC-TT  795
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GCAGGGAATGAGAATCTAGACAAAACATCTTAAGGTACTTTCTTCTCTTT  799

seq1  TTGAAG-TTTGCCT  808
      |||||| |||||||
seq2  TTGAAGTTTTGCCT  813