BAC Information

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BAC

Clone NameB6Ng01-179P16
Chromosome14 (Build37)
Map Location 109,403,773 - 109,487,524
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668757, EG668761, Slitrk1
Downstream geneLOC640892
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-179P16.bB6Ng01-179P16.g
ACCGA006546GA006547
length1,0351,065
definitionB6Ng01-179P16.b B6Ng01-179P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(109,403,773 - 109,404,807)(109,486,467 - 109,487,524)
sequence
gaattcaaatgtcattaacagcaactctttggttgatgaagttatatttt
ctattgcttaattcaaagatatatgtgatttaatagatgttgtattatat
attaactccatgtatttatgataaaaatgtaatcatgctttttctttaaa
aattgttttccaagtaaaactctatttacttttgtgattatatccataga
acaaatttcagaagactgaaattttgccttgaaaaataactgcttagaaa
tttttatagttttaagtctgaagaattgaatgatatttgattatttacac
agatctttgtgtttatattaaatgaaatgaagtggattacttttaattta
aaaacttggtttttaattcagtgtgtgtgtgtatgcatgcacatgagcat
gtgtgtgtgtgcatgggtgtatgtgtctttgtaaattcacatgtcagatt
gtatcagtggaggcaaaaactcaaaccaaggtttttagttctacttttct
tccaccatgctgcttagagtaatcagactcaggttttcagttggtggcat
gtgtcttgactaacaaagatatctcaagggctctgcaatctcatttcaat
aattttttttcttttctgaaacatataacacataccacataccacacacc
acataacatataacatgtttacatatacaatatgcatatgcacacacaca
cacacacacacacacacatacacacatgcatacacactataacatgtacc
tctcccttagcacctcattttgtccagtactgggcaatatttcctccaga
ctaattattcctttaccaattaaataaactcttaacttaggatttttatt
gcaaatgcctatcaccaaatgttgtatttatgtattagtagctacaagga
tgactgaaggtttattgttttgttttctgaagatttgttggcctcaggtt
gagtttgactctggtgtacagcacttgtttttgagagtatgatgaaccat
gaaaaataattattattatttatgatgggtccctc

gaattctagagtattcttctgttaacattgactagttgtgtctccggatt
attcactatctgttaaaagaaaaccattctctggtgaagattgagaagtg
aggtaattttgaataaatatataaaaaattagcaatttgtgacctatata
aaactattcttcatttcctttaatgaatgaaggaattaacttatttctag
atgcttttcgtagaccctttagtcccaggattctgcttaccaccgttttt
gattgtctctttatttgataatgtctaaaattgtatattcagaagataaa
ctacttaaaagagaatatgtagtagcttagtttcaagtggcagcaggaaa
aattgcgaaaggtttgttgagttatgtctattttagatgcttcctgatga
atacataccctccaaaagagaaactgaaaagccaaggcctctaagtattt
gtctaagaagaatcaatttttgaaattccaacgaattaatgtcaaaaaga
ctgcaatagaaaataaaataagagcttcattgtattttttgttattcaac
atagttaatcatttagctcattttagtcatctgtgtgcaaaactccagta
gacaacagaatgtaacttttaattacttaagagcaacactggtgctcagt
ttttttaaaaaaaaatgaaatctatgaacctattataatatctgcaggga
aaataagaggagaacaaaagcagtttttaaaaagtaatccttaacataga
gctaatacagaatgaaatttaaaacatctttaaacagtacaggggcaaag
atataagtcaattgaagattatttaaaataaaaacataaaaaatagccaa
atgctgattttagagagttacataaaatattctgaggaagtcaacaaagt
ttttcagtgatgggcaaaaagcaccacacattaagtgattaaaatagtga
gttgtggaaaagcaaattaagaattttttgatattaggacttagaaaaaa
taccaattaattaccatttggaaaaagaaaaggtatcttttccttgcagc
tagtttccaccgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_109403773_109404807
seq2: B6Ng01-179P16.b_47_1081

seq1  GAATTCAAATGTCATTAACAGCAACTCTTTGGTTGATGAAGTTATATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGTCATTAACAGCAACTCTTTGGTTGATGAAGTTATATTTT  50

seq1  CTATTGCTTAATTCAAAGATATATGTGATTTAATAGATGTTGTATTATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGCTTAATTCAAAGATATATGTGATTTAATAGATGTTGTATTATAT  100

seq1  ATTAACTCCATGTATTTATGATAAAAATGTAATCATGCTTTTTCTTTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCATGTATTTATGATAAAAATGTAATCATGCTTTTTCTTTAAA  150

seq1  AATTGTTTTCCAAGTAAAACTCTATTTACTTTTGTGATTATATCCATAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTTTTCCAAGTAAAACTCTATTTACTTTTGTGATTATATCCATAGA  200

seq1  ACAAATTTCAGAAGACTGAAATTTTGCCTTGAAAAATAACTGCTTAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTCAGAAGACTGAAATTTTGCCTTGAAAAATAACTGCTTAGAAA  250

seq1  TTTTTATAGTTTTAAGTCTGAAGAATTGAATGATATTTGATTATTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGTTTTAAGTCTGAAGAATTGAATGATATTTGATTATTTACAC  300

seq1  AGATCTTTGTGTTTATATTAAATGAAATGAAGTGGATTACTTTTAATTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTGTGTTTATATTAAATGAAATGAAGTGGATTACTTTTAATTTA  350

seq1  AAAACTTGGTTTTTAATTCAGTGTGTGTGTGTATGCATGCACATGAGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGTTTTTAATTCAGTGTGTGTGTGTATGCATGCACATGAGCAT  400

seq1  GTGTGTGTGTGCATGGGTGTATGTGTCTTTGTAAATTCACATGTCAGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGCATGGGTGTATGTGTCTTTGTAAATTCACATGTCAGATT  450

seq1  GTATCAGTGGAGGCAAAAACTCAAACCAAGGTTTTTAGTTCTACTTTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGTGGAGGCAAAAACTCAAACCAAGGTTTTTAGTTCTACTTTTCT  500

seq1  TCCACCATGCTGCTTAGAGTAATCAGACTCAGGTTTTCAGTTGGTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCATGCTGCTTAGAGTAATCAGACTCAGGTTTTCAGTTGGTGGCAT  550

seq1  GTGTCTTGACTAACAAAGATATCTCAAGGGCTCTGCAATCTCATTTCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGACTAACAAAGATATCTCAAGGGCTCTGCAATCTCATTTCAAT  600

seq1  AATTTTTTTTCTTTTCTGAAACATATAACACATACCACATACCACACACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTCTTTTCTGAAACATATAACACATACCACATACCACACACC  650

seq1  ACATAACATATAACATG-TTACATATACAATATGCATATGCACACACACA  699
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACATAACATATAACATGTTTACATATACAATATGCATATGCACACACACA  700

seq1  CACACACACACACACACATACACACATGCATACACACTATAACATGTACC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACATACACACATGCATACACACTATAACATGTACC  750

seq1  TCTCCCTTAGCACCTCATTTTGTCCAGTACTGGGCAATATTTCCTCCAGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTAGCACCTCATTTTGTCCAGTACTGGGCAATATTTCCTCCAGA  800

seq1  CTAATTATTCCTTTACCAATTAAATAAACTCTTAACTTAGGATTTTTATT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTATTCCTTTACCAATTAAATAAACTCTTAACTTAGGATTTTTATT  850

seq1  GCAAATGCCTATCACCAAATGTTGTATTTATGTATAAGTAGCTACCAGGA  899
      ||||||||||||||||||||||||||||||||||| ||||||||| ||||
seq2  GCAAATGCCTATCACCAAATGTTGTATTTATGTATTAGTAGCTACAAGGA  900

seq1  TGACTGAAGGTTTATTGTTTTGTTTTCTGAAGATTTGTTTGGCTTCAGGT  949
      ||||||||||||||||||||||||||||||||||||| ||||| ||||||
seq2  TGACTGAAGGTTTATTGTTTTGTTTTCTGAAGATTTG-TTGGCCTCAGGT  949

seq1  TGAGTTTTGACTCT-GTGTACCAGCACTTGTTTTTGAGAGTATGATGAAC  998
      |||| ||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGAG-TTTGACTCTGGTGTA-CAGCACTTGTTTTTGAGAGTATGATGAAC  997

seq1  AATGAAAAAATAATTATAATTA-TTATGAT-GGTCCCTC  1035
       ||| |||||||||||| |||| ||||||| ||||||||
seq2  CATG-AAAAATAATTATTATTATTTATGATGGGTCCCTC  1035


seq1: chr14_109486467_109487524
seq2: B6Ng01-179P16.g_66_1130 (reverse)

seq1  TCTCCGTGGAAACTAGCTGCAAAG-AAAGATA-CTTTTCTTTTT-CAAAT  47
      |||| ||||||||||||||||| | ||||||| ||||||||||| |||||
seq2  TCTCGGTGGAAACTAGCTGCAAGGAAAAGATACCTTTTCTTTTTCCAAAT  50

seq1  -GTAAATTATTGGTA-TTTTTCT-AGTTCTTATATC-AAAAATTC-TAAT  92
       |||| | ||||||| ||||||| ||| || ||||| |||||||| ||||
seq2  GGTAATTAATTGGTATTTTTTCTAAGTCCTAATATCAAAAAATTCTTAAT  100

seq1  TTGCTTTTCCAACACTCACTATTTTAATCACTTAAATGTGT-GTGCTTTT  141
      |||||||||||  |||||||||||||||||||| ||||||| ||||||||
seq2  TTGCTTTTCCACAACTCACTATTTTAATCACTT-AATGTGTGGTGCTTTT  149

seq1  TGCCAATCACCTGAAAAACTTTGTTGACTTCCTCAGAATATTTTATGTAA  191
      |||| |||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCA-CTGAAAAACTTTGTTGACTTCCTCAGAATATTTTATGTAA  198

seq1  CTCTCTAAAATCAGCATTTGGCTATTTTTTATGTTTTTATTTTAATTAAT  241
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCTCTAAAATCAGCATTTGGCTATTTTTTATGTTTTTATTTTAAATAAT  248

seq1  CTTCAATTGACTTATATCTTTGCCCCTGTACTGTTTAAAGATGTTTTAAA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAATTGACTTATATCTTTGCCCCTGTACTGTTTAAAGATGTTTTAAA  298

seq1  TTTCATTCTGTATTAGCTCTATGTTAAGGATTACTTTTTAAAAACTGCTT  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTGTATTAGCTCTATGTTAAGGATTACTTTTTAAAAACTGCTT  348

seq1  TTGTTCTCCTCTTATTTTCCCTGCAGATATTATAATAGGTTCATAGATTT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTCCTCTTATTTTCCCTGCAGATATTATAATAGGTTCATAGATTT  398

seq1  CATTTTTTTTTAAAAAAACTGAGCACCAGTGTTGCTCTTAAGTAATTAAA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTAAAAAAACTGAGCACCAGTGTTGCTCTTAAGTAATTAAA  448

seq1  AGTTACATTCTGTTGTCTACTGGAGTTTTGCACACAGATGACTAAAATGA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACATTCTGTTGTCTACTGGAGTTTTGCACACAGATGACTAAAATGA  498

seq1  GCTAAATGATTAACTATGTTGAATAACAAAAAATACAATGAAGCTCTTAT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATGATTAACTATGTTGAATAACAAAAAATACAATGAAGCTCTTAT  548

seq1  TTTATTTTCTATTGCAGTCTTTTTGACATTAATTCGTTGGAATTTCAAAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTCTATTGCAGTCTTTTTGACATTAATTCGTTGGAATTTCAAAA  598

seq1  ATTGATTCTTCTTAGACAAATACTTAGAGGCCTTGGCTTTTCAGTTTCTC  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTCTTCTTAGACAAATACTTAGAGGCCTTGGCTTTTCAGTTTCTC  648

seq1  TTTTGGAGGGTATGTATTCATCAGGAAGCATCTAAAATAGACATAACTCA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGAGGGTATGTATTCATCAGGAAGCATCTAAAATAGACATAACTCA  698

seq1  ACAAACCTTTCGCAATTTTTCCTGCTGCCACTTGAAACTAAGCTACTACA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACCTTTCGCAATTTTTCCTGCTGCCACTTGAAACTAAGCTACTACA  748

seq1  TATTCTCTTTTAAGTAGTTTATCTTCTGAATATACAATTTTAGACATTAT  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCTTTTAAGTAGTTTATCTTCTGAATATACAATTTTAGACATTAT  798

seq1  CAAATAAAGAGACAATCAAAAACGGTGGTAAGCAGAATCCTGGGACTAAA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAGAGACAATCAAAAACGGTGGTAAGCAGAATCCTGGGACTAAA  848

seq1  GGGTCTACGAAAAGCATCTAGAAATAAGTTAATTCCTTCATTCATTAAAG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTACGAAAAGCATCTAGAAATAAGTTAATTCCTTCATTCATTAAAG  898

seq1  GAAATGAAGAATAGTTTTATATAGGTCACAAATTGCTAATTTTTTATATA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAAGAATAGTTTTATATAGGTCACAAATTGCTAATTTTTTATATA  948

seq1  TTTATTCAAAATTACCTCACTTCTCAATCTTCACCAGAGAATGGTTTTCT  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAAAATTACCTCACTTCTCAATCTTCACCAGAGAATGGTTTTCT  998

seq1  TTTAACAGATAGTGAATAATCCGGAGACACAACTAGTCAATGTTAACAGA  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGATAGTGAATAATCCGGAGACACAACTAGTCAATGTTAACAGA  1048

seq1  AGAATACTCTAGAATTC  1058
      |||||||||||||||||
seq2  AGAATACTCTAGAATTC  1065


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