BAC Information

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BAC

Clone NameB6Ng01-181A12
Chromosome14 (Build37)
Map Location 35,001,107 - 35,161,707
singlet/doubletdoublet
Overlap geneGprin2, Syt15, 3110001K24Rik, LOC623142, Glud1, LOC100041231
Upstream geneEG622657, Arhgap22, Mapk8, LOC100040079, LOC665681, Frmpd2, LOC100040093, Ptpn20, Gdf10, Gdf2, Rbp3, Zfp488, EG665754, EG432838, Antxrl, Anxa8, LOC100041131, LOC665768, Ppyr1, LOC100041163
Downstream gene2200001I15Rik, Sncg, Mmrn2, Bmpr1a, 9230112D13Rik, LOC665834, Ldb3, Opn4, 5830448L01Rik, Wapal, LOC100041341, Grid1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181A12.bB6Ng01-181A12.g
ACCGA007302GA007303
length1,1571,158
definitionB6Ng01-181A12.b B6Ng01-181A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,160,541 - 35,161,707)(35,001,107 - 35,002,269)
sequence
gaattcaattcctggaacccatgtaaaagcacggggacagaacaaactcc
acaaagttgtcctctgatctctgcaagcacaccatggcatgtgcgttccc
ttgccccacagtaacaataaaatatttaaaaaattgtctaacctccaaaa
atagtcaaaagtgctgcccacaccttaattcacccccacatggccatttc
cgaaataagcacttgttctgtctttcattttctcctatgtgtagttggca
atgtggggtgtgaagtcactgttatcaaaataatggttgtgtcagcaaaa
acagtgtgctgtagtgttcagcttgtctcattctagctcatcctctgctc
ccctggttccactgcagcctagaaacctagcgaggggctattacagtgaa
tgttcacagtcccgaaattcagcactataaaggcccaagtacggttccca
gatgttcaaaaaggcagggagacctaagggctagggttgtagctcagtga
tagagtacttgttagcatgtgctagctcccgagtttcatttagagcacca
cagaaaacaagcaggttcctgatctagagacttgccattttatggctggg
ccacacgcaataggaaggaacacccatgccaggttgtctttatttcttcc
gatgagcagctcactttacactaaaactcttcattgggggcagctgccga
aaccactcagatgtcatcctttaagtcggtggctgctgtttggagaaaaa
atagaaacttcagtgggaaagctggggaatgctaggtctgcaaggttggc
acacttgtggggtcttctgggatctagagactccttgtgcaggactgtgc
acagacgaaaggacagacctgagaaacccagggccctctgagggtttggg
cccgatggttgaagacgatcttcggcctgcacacagcactccttggcaat
gaagccttactagctctagacgaaagaaatcttccctaatgactgaccgc
caagctgagtagtagaaatgtcagtgacacatacgacagacttcaggatc
agtcagaaaggccattagacagggtatgacagtcttgatgagcttgcctc
tggtcctggaacaccactgcatgttcagtacttgtgatgtccaagcgatg
cagttca
gaattctttagcgggaagggaacattctaaccgtccaggtagctttcagt
tcacgattcagttactcgaagtcaagagatcctaagacagcacctgagat
gccgtgtgacctggagtgacaaggggaatgcttgtctggacagtcaccct
gcccctcatgtaggcagagaagccagggtgccagctcacattcacttccc
attcgttcccatgcacaccctcagcccctccctctaaaacccctctgtaa
gaaacaggttctctccagtccctctccaggctcccagtatgcgctgatcc
ccagccagcctcgtcctccacgtagagatgctgcctccccacaaggagct
tcatgcccacccggtctgtctcttctagtcaccaccaaagggggctcacc
ttcacgtctagcctaccagtattctctggtctcttctgtcaaacatgcct
ggaatggggacagtcctgacgatccacaccttttcctcaggcctgggaag
actttcttccgtaagataggcaagcacatttgaggcgtgaaatgttgaag
gttgagccaaaggcctacatagccacatgggctaggtgggaggggcaagg
ttcccattccgactctcacacagtccatctggagaatgcgtgttgtccga
tctcccccagcaggccgtgggctactgcactggctctgccttctctagct
ttgtcgtctctggatcctctacccatgctccagattggaccggagtcccc
caggaagggagtaagtgttcgaaacggatgtcgcagtgaaatgactgtct
acccagatgggccttccaccagccatgggagcttcactccccagggtgaa
tacttccctactcccactagaggctccacccactaagtgggtctaatgct
gtgccccaccttcccagtagagggcgtctggccaccctttctggtggttt
ggagcagctgcagctttggctggaaagtcaacctctacccttcacttgga
tctaagcaaaggccactctactcttaagtcctagtttcagagcaggaaga
actaggggactcaggaccctggacttgttaatcagccagtggcttaagaa
acactgtgccaagcatgcaaagactttgtacttagacaagacctgtttga
gtgtaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_35160541_35161707
seq2: B6Ng01-181A12.b_45_1201 (reverse)

seq1  TGAACTGCACTCTGCCTGGGACATCTACAAAGTACTGAAACATGCAGTGG  50
      |||||||||   |  || ||||||| || |||||||| ||||||||||||
seq2  TGAACTGCA---TCGCTTGGACATC-AC-AAGTACTG-AACATGCAGTGG  44

seq1  TGTTCCAGGGGACCAGAGGCCAGCTCCATC-AGACTGTTCATACCCTTGT  99
      |||||||  ||||||||||| |||| |||| |||||| |||||||| |||
seq2  TGTTCCA--GGACCAGAGGCAAGCT-CATCAAGACTG-TCATACCC-TGT  89

seq1  CTAATGGCCTTTCTGACTGATCCTGAAGTCTGTCGTATGTGTCACTGACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGCCTTTCTGACTGATCCTGAAGTCTGTCGTATGTGTCACTGACA  139

seq1  TTTCTACTTACTCAGCTTGGCGGTCAGTCATTA-GGAAGATTTCTTTCGT  198
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  TTTCTAC-TACTCAGCTTGGCGGTCAGTCATTAGGGAAGATTTCTTTCGT  188

seq1  CTAGAGCTAGTAAGGCTTCATTGCCAAGGAGTGCTGTGTGCAGGCCGAAG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGCTAGTAAGGCTTCATTGCCAAGGAGTGCTGTGTGCAGGCCGAAG  238

seq1  ATCGTCTTCAACCATCGGGCCCAAACCCTCAGAGGGCCCTGGGTTTTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATCGTCTTCAACCATCGGGCCCAAACCCTCAGAGGGCCCTGGG-TTTCTC  287

seq1  AGGTCTGTCC-TTCGTCTGTGCACAGTCCTGCACAAGGAGTCTCTAGATC  347
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTGTCCTTTCGTCTGTGCACAGTCCTGCACAAGGAGTCTCTAGATC  337

seq1  CCAGAAGACCCCACAAGTGTGCCAACCTTGCAGACCTAGCATTCCCCAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGACCCCACAAGTGTGCCAACCTTGCAGACCTAGCATTCCCCAGC  387

seq1  TTTCCCACTGAAGTTTCTATTTTTTCTCCAAACAGCAGCCACCGACTTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCACTGAAGTTTCTATTTTTTCTCCAAACAGCAGCCACCGACTTAA  437

seq1  AGGATGACATCTGAGTGGTTTCGGCAGCTGCCCCCAATGAAGAGTTTTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGACATCTGAGTGGTTTCGGCAGCTGCCCCCAATGAAGAGTTTTAG  487

seq1  TGTAAAGTGAGCTGCTCATCGGAAGAAATAAAGACAACCTGGCATGGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAGTGAGCTGCTCATCGGAAGAAATAAAGACAACCTGGCATGGGTG  537

seq1  TTCCTTCCTATTGCGTGTGGCCCAGCCATAAAATGGCAAGTCTCTAGATC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTATTGCGTGTGGCCCAGCCATAAAATGGCAAGTCTCTAGATC  587

seq1  AGGAACCTGCTTGTTTTCTGTGGTGCTCTAAATGAAACTCGGGAGCTAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACCTGCTTGTTTTCTGTGGTGCTCTAAATGAAACTCGGGAGCTAGC  637

seq1  ACATGCTAACAAGTACTCTATCACTGAGCTACAACCCTAGCCCTTAGGTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTAACAAGTACTCTATCACTGAGCTACAACCCTAGCCCTTAGGTC  687

seq1  TCCCTGCCTTTTTGAACATCTGGGAACCGTACTTGGGCCTTTATAGTGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGCCTTTTTGAACATCTGGGAACCGTACTTGGGCCTTTATAGTGCT  737

seq1  GAATTTCGGGACTGTGAACATTCACTGTAATAGCCCCTCGCTAGGTTTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTCGGGACTGTGAACATTCACTGTAATAGCCCCTCGCTAGGTTTCT  787

seq1  AGGCTGCAGTGGAACCAGGGGAGCAGAGGATGAGCTAGAATGAGACAAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCAGTGGAACCAGGGGAGCAGAGGATGAGCTAGAATGAGACAAGC  837

seq1  TGAACACTACAGCACACTGTTTTTGCTGACACAACCATTATTTTGATAAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACACTACAGCACACTGTTTTTGCTGACACAACCATTATTTTGATAAC  887

seq1  AGTGACTTCACACCCCACATTGCCAACTACACATAGGAGAAAATGAAAGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGACTTCACACCCCACATTGCCAACTACACATAGGAGAAAATGAAAGA  937

seq1  CAGAACAAGTGCTTATTTCGGAAATGGCCATGTGGGGGTGAATTAAGGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACAAGTGCTTATTTCGGAAATGGCCATGTGGGGGTGAATTAAGGTG  987

seq1  TGGGCAGCACTTTTGACTATTTTTGGAGGTTAGACAATTTTTTAAATATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGCACTTTTGACTATTTTTGGAGGTTAGACAATTTTTTAAATATT  1037

seq1  TTATTGTTACTGTGGGGCAAGGGAACGCACATGCCATGGTGTGCTTGCAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTTACTGTGGGGCAAGGGAACGCACATGCCATGGTGTGCTTGCAG  1087

seq1  AGATCAGAGGACAACTTTGTGGAGTTTGTTCTGTCCCCGTGCTTTTACAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAGAGGACAACTTTGTGGAGTTTGTTCTGTCCCCGTGCTTTTACAT  1137

seq1  GGGTTCCAGGAATTGAATTC  1167
      ||||||||||||||||||||
seq2  GGGTTCCAGGAATTGAATTC  1157

seq1: chr14_35001107_35002269
seq2: B6Ng01-181A12.g_68_1225

seq1  GAATTCTTTAGCGGGAAGGGAACATTCTAACCGTCCAGGTAGCTTTCAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTAGCGGGAAGGGAACATTCTAACCGTCCAGGTAGCTTTCAGT  50

seq1  TCACGATTCAGTTACTCGAAGTCAAGAGATCCTAAGACAGCACCTGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATTCAGTTACTCGAAGTCAAGAGATCCTAAGACAGCACCTGAGAT  100

seq1  GCCGTGTGACCTGGAGTGACAAGGGGAATGCTTGTCTGGACAGTCACCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGTGACCTGGAGTGACAAGGGGAATGCTTGTCTGGACAGTCACCCT  150

seq1  GCCCCTCATGTAGGCAGAGAAGCCAGGGTGCCAGCTCACATTCACTTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCATGTAGGCAGAGAAGCCAGGGTGCCAGCTCACATTCACTTCCC  200

seq1  ATTCGTTCCCATGCACACCCTCAGCCCCTCCCTCTAAAACCCCTCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTTCCCATGCACACCCTCAGCCCCTCCCTCTAAAACCCCTCTGTAA  250

seq1  GAAACAGGTTCTCTCCAGTCCCTCTCCAGGCTCCCAGTATGCGCTGATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTTCTCTCCAGTCCCTCTCCAGGCTCCCAGTATGCGCTGATCC  300

seq1  CCAGCCAGCCTCGTCCTCCACGTAGAGATGCTGCCTCCCCACAAGGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGCCTCGTCCTCCACGTAGAGATGCTGCCTCCCCACAAGGAGCT  350

seq1  TCATGCCCACCCGGTCTGTCTCTTCTAGTCACCACCAAAGGGGGCTCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCACCCGGTCTGTCTCTTCTAGTCACCACCAAAGGGGGCTCACC  400

seq1  TTCACGTCTAGCCTACCAGTATTCTCTGGTCTCTTCTGTCAAACATGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTCTAGCCTACCAGTATTCTCTGGTCTCTTCTGTCAAACATGCCT  450

seq1  GGAATGGGGACAGTCCTGACGATCCACACCTTTTCCTCAGGCCTGGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGGGGACAGTCCTGACGATCCACACCTTTTCCTCAGGCCTGGGAAG  500

seq1  ACTTTCTTCCGTAAGATAGGCAAGCACATTTGAGGCGTGAAATGTTGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTCCGTAAGATAGGCAAGCACATTTGAGGCGTGAAATGTTGAAG  550

seq1  GTTGAGCCAAAGGCCTACATAGCCACATGGGCTAGGTGGGAGGGGCAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGCCAAAGGCCTACATAGCCACATGGGCTAGGTGGGAGGGGCAAGG  600

seq1  TTCCCATTCCGACTCTCACACAGTCCATCTGGAGAATGCGTGTTGTCCGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTCCGACTCTCACACAGTCCATCTGGAGAATGCGTGTTGTCCGA  650

seq1  TCTCCCCCAGCAGGCCGTGGGCTACTGCACTGGCTCTGCCTTCTCTAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCCCAGCAGGCCGTGGGCTACTGCACTGGCTCTGCCTTCTCTAGCT  700

seq1  TTGTCGTCTCTGGATCCTCTACCCATGCTCCAGATTGGACCGGAGTCCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCGTCTCTGGATCCTCTACCCATGCTCCAGATTGGACCGGAGTCCCC  750

seq1  CAGGAAGGGAGTAAGTGTTCGAAACGGATGTCGCAGTGAAATGACTGTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGGGAGTAAGTGTTCGAAACGGATGTCGCAGTGAAATGACTGTCT  800

seq1  ACCCAGATGGGCCTTCCACCAGCCATGGGAGCTTCACTCCCCAGGGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGATGGGCCTTCCACCAGCCATGGGAGCTTCACTCCCCAGGGTGAA  850

seq1  TACTTCCCTACTCCCACTAGAGGCTCCACCCACTAAGTGGGTCTAATGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCCCTACTCCCACTAGAGGCTCCACCCACTAAGTGGGTCTAATGCT  900

seq1  GTGCCCCACCTTCCCAGTAGAGGGCGTCTGGCCACCC-TTCTGGTGGTTT  949
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GTGCCCCACCTTCCCAGTAGAGGGCGTCTGGCCACCCTTTCTGGTGGTTT  950

seq1  GGAGCAGCTGCAGCTTTGGCTGGAAAGTCAACCTCTACCCTTCACTT-GA  998
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GGAGCAGCTGCAGCTTTGGCTGGAAAGTCAACCTCTACCCTTCACTTGGA  1000

seq1  TCTTAGCCAAAAGGCCACCTCTACTCTTAAGTCCTAGTTCCAGAGCAGGA  1048
      ||| |||  |||||||| ||||||||||||||||||||| ||||||||||
seq2  TCTAAGC--AAAGGCCA-CTCTACTCTTAAGTCCTAGTTTCAGAGCAGGA  1047

seq1  GAGAACTAAGGGGACTCAAGACCCTGGACCTGGTAATCAGGCAGTGGC-T  1097
       |||||| |||||||||| |||||||||| || ||||||| ||||||| |
seq2  -AGAACT-AGGGGACTCAGGACCCTGGACTTGTTAATCAGCCAGTGGCTT  1095

seq1  AAGAAACAACTGTG-CAAGCATGCCAAAAGACTTTGTAATTAAGACAAGC  1146
      ||||||| |||||| |||||||||  |||||||||||| || ||||||| 
seq2  AAGAAAC-ACTGTGCCAAGCATGC--AAAGACTTTGTACTT-AGACAAGA  1141

seq1  ACTGTTTTAATGTAACA  1163
       |||||| | |||||||
seq2  CCTGTTTGAGTGTAACA  1158