BAC Information

Click to search

BAC

Clone NameB6Ng01-181B04
Chromosome14 (Build37)
Map Location 68,676,834 - 68,828,253
singlet/doubletdoublet
Overlap geneNefl, Nefm, LOC100043072
Upstream genePpp2r2a, Ebf2, EG628416, LOC100043046, LOC100043056, Cdca2, Kctd9, Gnrh1, Dock5
Downstream geneAdam7, Adamdec1, Adam28, LOC641033, LOC100043082, Stc1, EG545808, Nkx2-6, Nkx3-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181B04.bB6Ng01-181B04.g
ACCGA007332GA007333
length391936
definitionB6Ng01-181B04.b B6Ng01-181B04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,676,834 - 68,677,230)(68,827,321 - 68,828,253)
sequence
catgacagcctgggcttcttatcacattgtatatagactccccaaacttc
tgtagacttgtctctatccttgaagactgtttgttactggacctgccgtg
gtcatctctgtgtggctcagagccttggtttctgttttctttcagactca
tcagtctgttaatatcagtcttctaagggagttctcctttcttttaccca
taaaaaatgtctttatcccttgacatttcttcataaaaatggcaccttac
cagcagcccccagtatcaccttctctctaaattactaacctagaaggtga
aaatgtaccatcttccaaactagcgccgatgttcaacttaatgacaggat
ctgtttgtgtatgtgagtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaagagaatgggggatgaatggcatgggaggagttgaagggggat
gatgtagttatattttaattatgtgaaataaatgtattcctgtaacttct
agttctgatatatattttaatggccactaaaattattttcatagatatat
atttaccaagaaacccctagtagattatgtgaaatgactaaccataaaac
agttcccaaaatattcttcccttagggaacaaaaccaaaagacagaggat
aaaattctattaaaacacgacctataaggtctgcttgacattttaatttc
cttaagatgatttttcttctgtttctttaccagaaggacacaaagaagat
gaaggggagggacctctatgttctaattgcaaatccatcacataaattat
tggcagattctcttttgttggatgagctaatgtaattttcaaaactccca
actgagctaatgtgattacactcagttcccattaaagaggggtcgtcagg
ggccaaagcccctgcccctgttctacccacaggctgggtcgataatggca
ggaggcatggtagctgctcaataattgaaaccaacgtcatcttcagactg
tagatagaaggcaaagctgtttggaggctgatttgcattgtttatggaat
gcccagagctatgaatgtcagcatctccaacattgcaaagctgcagtacc
aggactgataggctctaaaggctcaaagtcccctgtgtacacaataggaa
gccagggcctcagaaggacagcctacttgtaccagtgagttcggggcagt
ccaattatgacatgatcttccttctcgctatgtccattttagagagcaaa
gcgggtatctgataccatgcacgggaagaggcattttaagatatacgaag
ctataatttgttgcacaattatgggaaaatagtatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_68676834_68677230
seq2: B6Ng01-181B04.b_44_440

seq1  GAATTCCATGACAGCCTGGGCTTCTTATCACATTGTATATAGACTCCCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGACAGCCTGGGCTTCTTATCACATTGTATATAGACTCCCCA  50

seq1  AACTTCTGTAGACTTGTCTCTATCCTTGAAGACTGTTTGTTACTGGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTGTAGACTTGTCTCTATCCTTGAAGACTGTTTGTTACTGGACCT  100

seq1  GCCGTGGTCATCTCTGTGTGGCTCAGAGCCTTGGTTTCTGTTTTCTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGTGGTCATCTCTGTGTGGCTCAGAGCCTTGGTTTCTGTTTTCTTTCA  150

seq1  GACTCATCAGTCTGTTAATATCAGTCTTCTAAGGGAGTTCTCCTTTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATCAGTCTGTTAATATCAGTCTTCTAAGGGAGTTCTCCTTTCTTT  200

seq1  TACCCATAAAAAATGTCTTTATCCCTTGACATTTCTTCATAAAAATGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCATAAAAAATGTCTTTATCCCTTGACATTTCTTCATAAAAATGGCA  250

seq1  CCTTACCAGCAGCCCCCAGTATCACCTTCTCTCTAAATTACTAACCTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACCAGCAGCCCCCAGTATCACCTTCTCTCTAAATTACTAACCTAGA  300

seq1  AGGTGAAAATGTACCATCTTCCAAACTAGCGCCGATGTTCAACTTAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAAAATGTACCATCTTCCAAACTAGCGCCGATGTTCAACTTAATGA  350

seq1  CAGGATCTGTTTGTGTATGTGAGTGTGTGTGTGTGTGTGTGTGTGTG  397
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATCTGTTTGTGTATGTGAGTGTGTGTGTGTGTGTGTGTGTGTG  397

seq1: chr14_68827321_68828253
seq2: B6Ng01-181B04.g_65_1000 (reverse)

seq1  CATACTATTTT-CCATAATTGGTGC-ACAAATTTATGCTTCGTATATCTT  48
      ||||||||||| |||||||| |||| |||||||   ||||||||||||||
seq2  CATACTATTTTCCCATAATT-GTGCAACAAATTATAGCTTCGTATATCTT  49

seq1  AAAATGGCTTCTTCCCCTGC-TGGTATCAGCTA-CCGCTTTGCTCTCTAA  96
      ||||| || ||||||| ||| ||||||||| || ||||||||||||||||
seq2  AAAAT-GCCTCTTCCCGTGCATGGTATCAGATACCCGCTTTGCTCTCTAA  98

seq1  AATGGACATAGCGAGAAGGAAGATCATGTCATAATTGGACCTGCCCCGAA  146
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATGGACATAGCGAGAAGGAAGATCATGTCATAATTGGA-CTGCCCCGAA  147

seq1  CTCACTGGTACAAGTAGGCTGTCCTTCTGAGGCCCTGGCTTCCTATTGTG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGGTACAAGTAGGCTGTCCTTCTGAGGCCCTGGCTTCCTATTGTG  197

seq1  TACACAGGGGAC-TTGAGCCTTTAGAGCCTATCAGTCCTGGTACTGCAGC  245
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TACACAGGGGACTTTGAGCCTTTAGAGCCTATCAGTCCTGGTACTGCAGC  247

seq1  TTTGCAATGTTGGAGATGCTGACATTCATAGCTCTGGGCATTCCATAAAC  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCAATGTTGGAGATGCTGACATTCATAGCTCTGGGCATTCCATAAAC  297

seq1  AATGCAAATCAGCCTCCAAACAGCTTTGCCTTCTATCTACAGTCTGAAGA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAAATCAGCCTCCAAACAGCTTTGCCTTCTATCTACAGTCTGAAGA  347

seq1  TGACGTTGGTTTC-ATTATTGAGCAGCTACCATGCCTCCTGCCATTATCG  394
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGACGTTGGTTTCAATTATTGAGCAGCTACCATGCCTCCTGCCATTATCG  397

seq1  ACCCAGCCTGTGGGTAGAACAGGGGCAGGGGCTTTGGCCCCTGACGACCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCTGTGGGTAGAACAGGGGCAGGGGCTTTGGCCCCTGACGACCC  447

seq1  CTCTTTAATGGGAACTGAGTGTAATCACATTAGCTCAGTTGGGAGTTTTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTAATGGGAACTGAGTGTAATCACATTAGCTCAGTTGGGAGTTTTG  497

seq1  AAAATTACATTAGCTCATCCAACAAAAGAGAATCTGCCAATAATTTATGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACATTAGCTCATCCAACAAAAGAGAATCTGCCAATAATTTATGT  547

seq1  GATGGATTTGCAATTAGAACATAGAGGTCCCTCCCCTTCATCTTCTTTGT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGATTTGCAATTAGAACATAGAGGTCCCTCCCCTTCATCTTCTTTGT  597

seq1  GTCCTTCTGGTAAAGAAACAGAAGAAAAATCATCTTAAGGAAATTAAAAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTCTGGTAAAGAAACAGAAGAAAAATCATCTTAAGGAAATTAAAAT  647

seq1  GTCAAGCAGACCTTATAGGTCGTGTTTTAATAGAATTTTATCCTCTGTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGCAGACCTTATAGGTCGTGTTTTAATAGAATTTTATCCTCTGTCT  697

seq1  TTTGGTTTTGTTCCCTAAGGGAAGAATATTTTGGGAACTGTTTTATGGTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTTTTGTTCCCTAAGGGAAGAATATTTTGGGAACTGTTTTATGGTT  747

seq1  AGTCATTTCACATAATCTACTAGGGGTTTCTTGGTAAATATATATCTATG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCACATAATCTACTAGGGGTTTCTTGGTAAATATATATCTATG  797

seq1  AAAATAATTTTAGTGGCCATTAAAATATATATCAGAACTAGAAGTTACAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTTTAGTGGCCATTAAAATATATATCAGAACTAGAAGTTACAG  847

seq1  GAATACATTTATTTCACATAATTAAAATATAACTACATCATCCCCCTTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATTTATTTCACATAATTAAAATATAACTACATCATCCCCCTTCA  897

seq1  ACTCCTCCCATGCCATTCATCCCCCATTCTCTTGAATTC  933
      |||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTCCCATGCCATTCATCCCCCATTCTCTTGAATTC  936