BAC Information

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BAC

Clone NameB6Ng01-181F03
Chromosome14 (Build37)
Map Location 20,561,090 - 20,562,203
singlet/doubletsinglet
Overlap genenone
Upstream geneUbe2e2, LOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855
Downstream geneNid2, 2700060E02Rik, LOC100039534, Gng2, 1810063B07Rik, Kcnk5, LOC100039106, Kcnk16, Nudt13, Ecd, AA536717, Dnajc9, Mrps16, Ttc18, Anxa7, Zmynd17, Ppp3cb, Usp54, Myoz1, Synpo2l, Sec24c, Fut11, Chchd1, 2310021P13Rik, Ndst2, Camk2g
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-181F03.bB6Ng01-181F03.g
ACCGA007512GA007513
length2721,130
definitionB6Ng01-181F03.b B6Ng01-181F03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
aggtgggatgtagcattcctgcaaacttctacagtccttcacatataatc
tctgactgttctagagatatctgttatttgtgggggtgtttagggttttg
ttgtgttttgctttgttaacgggcaaatccagcccaacctaactaagtct
accatgatgatgtttatataaacacttaatctctatccttggtcatgact
gccaaatatctttaacactcagaagttctagctaatcattagcagaaaat
ataacttacttatttcaaaaca
gaattcattaacttgcttggtagtggtggcgcacacctttaatctcagca
ctcaggaggcagaggcaggtggatctttgttagttagagtccagcctggt
ctacagagaaagttctaggacagccagggctacacagagagaccctgaaa
agggaaaagaaatcactaaactcagggctggagagatagttcagtagtca
agatcacttacggctcttgcagaggacagggcttggtttcccagcaccca
catacatggcagctcatggttctttgtaaccacagttccaggggatacaa
tactctgtctcttctgactctaagagctccagaattaaatgtggtccaca
tacacacatggaggctaaacactcatgcatataaaataaaaaagtaaata
agtcataaatcacaaagtcctttgccaatgcaagggttgtgacgatttca
tcagcttttggacgagaatctttagcacaggtatgtctaaggtgagacag
cggctgctgggatgcgctgaaacacttggacgcttagaaaatgattcacg
ttgtctacacgaatatctatcaaatgtgcccacctacaatgttttgccac
tttaacctgctttcacatacataacctccacttcttcccaaactctgaaa
gagcagagaccatctgaccccacactgaccctgccctttgttcttcataa
tgtcacagactggcctctgccctctcttctcccaggctgtacaattaata
ttcgaaatagacatgtggggggtttgaatatgcttggctcgagggacatg
gcactattaggaagtgtagccttgtaataggaagtgtgtcacggtggagg
tgtttaacttttgaggtctcacatatagggctcaagtctgggccactgtg
atccagagcctcctcatgggctgcctggaggaagacaatcgcctcctggt
tgcttttggaacaagacgtagaactttgcagctcctccagcaccatgtct
gactgcacagtgcccttgcttcctgcatgatgataattgacctgaacttc
tgaaactgttaggccagcactatgaaattgtttttttttcttttataaga
aattgccttagcctgggcgtgtaagcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_20561090_20562203
seq2: B6Ng01-181F03.g_65_1194

seq1  GAATTCATTAACTTGCTTGGTAGTGGTGGCGCACACCTTTAATCTCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAACTTGCTTGGTAGTGGTGGCGCACACCTTTAATCTCAGCA  50

seq1  CTCAGGAGGCAGAGGCAGGTGGATCTTTGTTAGTTAGAGTCCAGCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGAGGCAGAGGCAGGTGGATCTTTGTTAGTTAGAGTCCAGCCTGGT  100

seq1  CTACAGAGAAAGTTCTAGGACAGCCAGGGCTACACAGAGAGACCCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGAAAGTTCTAGGACAGCCAGGGCTACACAGAGAGACCCTGAAA  150

seq1  AGGGAAAAGAAATCACTAAACTCAGGGCTGGAGAGATAGTTCAGTAGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAAGAAATCACTAAACTCAGGGCTGGAGAGATAGTTCAGTAGTCA  200

seq1  AGATCACTTACGGCTCTTGCAGAGGACAGGGCTTGGTTTCCCAGCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACTTACGGCTCTTGCAGAGGACAGGGCTTGGTTTCCCAGCACCCA  250

seq1  CATACATGGCAGCTCATGGTTCTTTGTAACCACAGTTCCAGGGGATACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGGCAGCTCATGGTTCTTTGTAACCACAGTTCCAGGGGATACAA  300

seq1  TACTCTGTCTCTTCTGACTCTAAGAGCTCCAGAATTAAATGTGGTCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCTGTCTCTTCTGACTCTAAGAGCTCCAGAATTAAATGTGGTCCACA  350

seq1  TACACACATGGAGGCTAAACACTCATGCATATAAAATAAAAAAGTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACATGGAGGCTAAACACTCATGCATATAAAATAAAAAAGTAAATA  400

seq1  AGTCATAAATCACAAAGTCCTTTGCCAATGCAAGGGTTGTGACGATTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATAAATCACAAAGTCCTTTGCCAATGCAAGGGTTGTGACGATTTCA  450

seq1  TCAGCTTTTGGACGAGAATCTTTAGCACAGGTATGTCTAAGGTGAGACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTTTTGGACGAGAATCTTTAGCACAGGTATGTCTAAGGTGAGACAG  500

seq1  CGGCTGCTGGGATGCGCTGAAACACTTGGACGCTTAGAAAATGATTCACG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGCTGGGATGCGCTGAAACACTTGGACGCTTAGAAAATGATTCACG  550

seq1  TTGTCTACACGAATATCTATCAAATGTGCCCACCTACAATGTTTTGCCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTACACGAATATCTATCAAATGTGCCCACCTACAATGTTTTGCCAC  600

seq1  TTTAACCTGCTTTCACATACATAACCTCCACTTCTTCCCAAACTCTGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCTGCTTTCACATACATAACCTCCACTTCTTCCCAAACTCTGAAA  650

seq1  GAGCAGAGACCATCTGACCCCACACTGACCCTGCCCTTTGTTCTTCATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGAGACCATCTGACCCCACACTGACCCTGCCCTTTGTTCTTCATAA  700

seq1  TGTCACAGACTGGCCTCTGCCCTCTCTTCTCCCAGGCTGTACAATTAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGACTGGCCTCTGCCCTCTCTTCTCCCAGGCTGTACAATTAATA  750

seq1  TTCGAAATAGACATGT-GGGGGTTTGAATATGCTTGGCTCGAGGGACATG  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTCGAAATAGACATGTGGGGGGTTTGAATATGCTTGGCTCGAGGGACATG  800

seq1  GCACTATTAGGAAGTGTAGCCTTGTAATAGGAAGTGTGTCACGGTGGAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTATTAGGAAGTGTAGCCTTGTAATAGGAAGTGTGTCACGGTGGAGG  850

seq1  TG-TTAAC-TTTGAGGTCTCACATATA-GGCTCAAGTCT-GGCCACTGTG  895
      || ||||| |||||||||||||||||| ||||||||||| ||||||||||
seq2  TGTTTAACTTTTGAGGTCTCACATATAGGGCTCAAGTCTGGGCCACTGTG  900

seq1  ATCCAGAGCCTCCTCAT-GGCTGCCT-GAGGAAGACAATCGCCTCCTGTT  943
      ||||||||||||||||| |||||||| ||||||||||||||||||||| |
seq2  ATCCAGAGCCTCCTCATGGGCTGCCTGGAGGAAGACAATCGCCTCCTGGT  950

seq1  TGCCTTTGGAACAAGACGTAGAAC-TTGCAGCTCCTCCAGCACCATGTCT  992
      ||| |||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGCTTTTGGAACAAGACGTAGAACTTTGCAGCTCCTCCAGCACCATGTCT  1000

seq1  GACTGCACAGTGCCC-TGCTTCCTGCCATGATGATAATGGA-CTGAACTT  1040
      ||||||||||||||| ||||||||| |||||||||||| || ||||||||
seq2  GACTGCACAGTGCCCTTGCTTCCTG-CATGATGATAATTGACCTGAACTT  1049

seq1  CTGAAACTG-TAAGCCAGCACCAATGAAA-TGTTTTTT----CTTTATAA  1084
      ||||||||| || ||||||| | |||||| ||||||||     |||||||
seq2  CTGAAACTGTTAGGCCAGCA-CTATGAAATTGTTTTTTTTTCTTTTATAA  1098

seq1  G-AATTGCCTTAG-CTGGGCGTGGTAGCACAC  1114
      | ||||||||||| |||||||||  |||||||
seq2  GAAATTGCCTTAGCCTGGGCGTGTAAGCACAC  1130