BAC Information

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BAC

Clone NameB6Ng01-182F16
Chromosome14 (Build37)3 (Build37)
Map Location 80,284,593 - 80,284,78457,862,571 - 57,863,654
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene1300010F03Rik, LOC629709, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8
Downstream geneEG629734, Olfm4, LOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-182F16.bB6Ng01-182F16.g
ACCGA008269GA008270
length3571,102
definitionB6Ng01-182F16.b B6Ng01-182F16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,284,593 - 80,284,784)(57,862,571 - 57,863,654)
sequence
taggctaccctgtgctataaattatggtctttttactacagataaaaagt
tgtcttctcttatagaaacaaagacttttaatgttttctactatttttca
gcatttaaatatcaagttagtatatctttggactgtattctattagaatg
cttgatttttgttttttgggttttttttgttttgtttttgtttttgtttt
tgctgtgtgtgtgtgtgttttgagacagggtttctctgtatagccctggc
tgtcctggaactcactttgtagaccaggctggcctcgaactcaaaaatcc
acctgcctctgcctcccgagtgctgggattaaaggcgtgcactaccacgc
ccggctt
gaattctcatctactgtaaagagaatgttacagagtttggccaccgtggg
attcagtattacagttttccacgagatacatagaaccactatgtattctg
ggaatcctccatcaggctattctcagatggtcagtaagaaatctgcacgt
tatgcttatttcaacattatttacagtagccaagtgatagaatcgacggt
ccaatcatcgaacaatagaagaaatgtggcacatataaataatagactac
tactcagccttaaaaatgaagggaattctgtcatctataatgcatggata
atactgactacactgtgttaaatgaaatgaactaggcaggcagttgctaa
acagtctcatgttaagagccaaaacaattgaagccatagaaacagatggt
agaggggtggttcctcagtttaagggcttgagggaatggggttatgatga
tcaatgtagtcattttgcagcggaataagaccttgatttttttttttact
tcctgcaagttgtggtgatatttataaagcataccatcattttatattcc
ataaatatataataaattgtcagtttataataaagtgtctttcctttaaa
aagatctaatgagctaaaaactttgttaacaaattatttctagccgtgaa
ttttatcctcaggcaggttcatattttaataatggggataaagatatttc
tagaacgttaagtctcaaaacatgtatttctagtgcttttctggaagcta
ctgaataatacactaaaatgagaacataaaccagaagaaaaagggacatg
ggggtccaagaggcagggaacccagcaagggatagaagactctacaagga
aatattcttaaatataattgtacttagaaatagcagaagatagactgctt
tgccaaacaaagcagaaggttttgtggccaagaaattctgagagagacat
taaaacggacctagaccaataagaaaaaaattgaggcatttaataaatcc
tattggagacattcattgtgcaaatcactatttacccctggtgggattta
cctttatgtaaatggaccgaaaaaaaggaatctacgggctctaactgtaa
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80284593_80284784
seq2: B6Ng01-182F16.b_205_405

seq1  TTTTGTTTT---GTTTTGTTTTGTTTTGTTTTTGTTTTTGTTTTTG----  43
      |||||||||   | ||| ||||||||||||||||||||||||||||    
seq2  TTTTGTTTTTTGGGTTTTTTTTGTTTTGTTTTTGTTTTTGTTTTTGCTGT  50

seq1  --TTTTTTGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT  91
         | | ||| |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCT  100

seq1  GGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGC  141
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  GGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAAAAATCCACCTGC  150

seq1  TTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCT  191
       ||||||||| ||||||||||||||||||||||  | |||||||||||||
seq2  CTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCACTACCACGCCCGGCT  200

seq1  T  192
      |
seq2  T  201

seq1: chr3_57862571_57863654
seq2: B6Ng01-182F16.g_63_1164

seq1  GAATTCTCATCTACTGTAAAGAGAATGTTACAGAGTTTGGCCACCGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCATCTACTGTAAAGAGAATGTTACAGAGTTTGGCCACCGTGGG  50

seq1  ATTCAGTATTACAGTTTTCCACGAGATACATAGAACCACTATGTATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTATTACAGTTTTCCACGAGATACATAGAACCACTATGTATTCTG  100

seq1  GGAATCCTCCATCAGGCTATTCTCAGATGGTCAGTAAGAAATCTGCACGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCCTCCATCAGGCTATTCTCAGATGGTCAGTAAGAAATCTGCACGT  150

seq1  TATGCTTATTTCAACATTATTTACAGTAGCCAAGTGATAGAATCGACGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTATTTCAACATTATTTACAGTAGCCAAGTGATAGAATCGACGGT  200

seq1  CCAATCATCGAACAATAGAAGAAATGTGGCACATATAAATAATAGACTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCATCGAACAATAGAAGAAATGTGGCACATATAAATAATAGACTAC  250

seq1  TACTCAGCCTTAAAAATGAAGGGAATTCTGTCATCTATAATGCATGGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTCAGCCTTAAAAATGAAGGGAATTCTGTCATCTATAATGCATGGATA  300

seq1  ATACTGACTACACTGTGTTAAATGAAATGAACTAGGCAGGCAGTTGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGACTACACTGTGTTAAATGAAATGAACTAGGCAGGCAGTTGCTAA  350

seq1  ACAGTCTCATGTTAAGAGCCAAAACAATTGAAGCCATAGAAACAGATGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCATGTTAAGAGCCAAAACAATTGAAGCCATAGAAACAGATGGT  400

seq1  AGAGGGGTGGTTCCTCAGTTTAAGGGCTTGAGGGAATGGGGTTATGATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTGGTTCCTCAGTTTAAGGGCTTGAGGGAATGGGGTTATGATGA  450

seq1  TCAATGTAGTCATTTTGCAGCGGAATAAGACCTTGATTTTTTTTTTTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTAGTCATTTTGCAGCGGAATAAGACCTTGATTTTTTTTTTTACT  500

seq1  TCCTGCAAGTTGTGGTGATATTTATAAAGCATACCATCATTTTATATTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCAAGTTGTGGTGATATTTATAAAGCATACCATCATTTTATATTCC  550

seq1  ATAAATATATAATAAATTGTCAGTTTATAATAAAGTGTCTTTCCTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATATAATAAATTGTCAGTTTATAATAAAGTGTCTTTCCTTTAAA  600

seq1  AAGATCTAATGAGCTAAAAACTTTGTTAACAAATTATTTCTAGCCGTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAATGAGCTAAAAACTTTGTTAACAAATTATTTCTAGCCGTGAA  650

seq1  TTTTATCCTCAGGCAGGTTCATATTTTAATAATGGGGATAAAGATATTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCCTCAGGCAGGTTCATATTTTAATAATGGGGATAAAGATATTTC  700

seq1  TAGAACGTTAAGTCTCAAAACATGTATTTCTAGTGCTTTTCTGGAAGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACGTTAAGTCTCAAAACATGTATTTCTAGTGCTTTTCTGGAAGCTA  750

seq1  CTGAATAATACACTAAAATGAGAACATAAACCAGAAGAAAAAGGGACAT-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CTGAATAATACACTAAAATGAGAACATAAACCAGAAGAAAAAGGGACATG  800

seq1  GGGGTCCAAGAGGCAGGGAACCCAGCAAAGGATAGAAGACTCTACAAAGA  849
      |||||||||||||||||||||||||||| |||||||||||||||||| ||
seq2  GGGGTCCAAGAGGCAGGGAACCCAGCAAGGGATAGAAGACTCTACAAGGA  850

seq1  AATATTCTTAAATATAATTGTACTTAGAAA-AGCAG-AGATAGACTGCTT  897
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  AATATTCTTAAATATAATTGTACTTAGAAATAGCAGAAGATAGACTGCTT  900

seq1  TGCCAAACAAAGCAGAAG--TTTGT-GCCAAG-AATTCTGAGAGAGACAT  943
      ||||||||||||||||||  ||||| |||||| |||||||||||||||||
seq2  TGCCAAACAAAGCAGAAGGTTTTGTGGCCAAGAAATTCTGAGAGAGACAT  950

seq1  --AAAAGGACCTAGA-CAATAAGAAAAAAA-TGAAGCAATTAATAAATCC  989
        ||| ||||||||| |||||||||||||| ||| ||| |||||||||||
seq2  TAAAACGGACCTAGACCAATAAGAAAAAAATTGAGGCATTTAATAAATCC  1000

seq1  TATT-GAGACAATCATT-TGCAAAACAC-AATTACACATG--TGGATTTA  1034
      |||| |||||| ||||| |||||| ||| | |||| | ||   |||||||
seq2  TATTGGAGACATTCATTGTGCAAATCACTATTTACCCCTGGTGGGATTTA  1050

seq1  CCTATAGTAAAATGGACAGAAAAAAAGAAATCTACGGGCT-TAACTG-AA  1082
      ||| ||   |||||||| ||||||||| |||||||||||| |||||| ||
seq2  CCTTTATGTAAATGGACCGAAAAAAAGGAATCTACGGGCTCTAACTGTAA  1100

seq1  AT  1084
      ||
seq2  AT  1102