BAC Information

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BAC

Clone NameB6Ng01-183A19
Chromosome14 (Build37)
Map Location 55,336,831 - 55,472,503
singlet/doubletdoublet
Overlap geneSlc7a8, LOC667893, Homez
Upstream geneOTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10, Rem2, Prmt5, D14Ertd500e, Jub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe
Downstream genePpp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-183A19.bB6Ng01-183A19.g
ACCGA008777GA008778
length1,1951,070
definitionB6Ng01-183A19.b B6Ng01-183A19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,336,831 - 55,338,027)(55,471,434 - 55,472,503)
sequence
gaattccacaatgacctctaattccttagaaacaaaggatgaccttgaat
ttttttttttttttaagatttcttttgtttgtctttttagggcaagattt
ctcggtgtggccctggctggcctcgggctcacagaggtccgcctgcctct
gcctcccaagagctgggatgaaaggcatgtgccaccatgcctggtaagat
ttatttttactttatgtgtatggtgccctgtctacatgtatgtttgtgtg
acatgtttatacctgctactttcagagtccagaagaaggtgctagatgcc
ttagaactggagttatagatagttgcgacttgccacgtgtgagctgggaa
ttgaacttatgtcttctggaagagcagttggtattttgtttagatttatt
tatttattttatgtagataagcacactacttcagacacaccagaagaggg
cattggataccattacagacagttgtgagccaccatggggttgctgggaa
ttgaactcaggacctcaggaagagcagccagtgctcttaaccactgagcc
atctctctagcttggactttaaatctttgatcaccttccaaaatgctggg
atccaaccaccatgccttctctttctgtcttcctgtcttccagtctgtct
gtctgtctttttggtggtgctggagattgagctggggacatcattcatgc
ttgcaagcatcttatcacatgggctacattttgctctttgagaatagaca
ggttttatttgtaatcttttcagtaatagcctttgtcttttttttctttt
aaagatttatttattttatttagatgagtgcattgtagctgtcttcagac
acaccagaagagggcatcagattctattacagatgattgtgagccactat
gtggttgttgggaattgaactcaggacctttgggaagagcagtcattgct
cttaactcctgagacatatctccagtcccacggcctctgtcttaattagg
gtttctattgctgtgatgaaaccactatgactaaaagcaagttggggagg
aaaagggtttatttagttacactttccacatcaccgtttttccattggag
aagcccaggacaggaaccttaagtggggcagttactgagatcagactgga
gccaaggcatgaagtgctgctactgattgctccatcaggtgcttg
gaattcacagcaatctgcctgcttctgttttccaaaagggcagggattaa
aggtgccaccatgcccaacctagattaagagctgatgcgtcctgtgagac
aaggcctttgttgttactgaagaaactgtacgcttcagtgcttgatgatg
atgatgtaaaatatctgaggaactttgggaagatttggaacatctgacta
ctgtatcaaaagacaattaccagggaggcaaagatcttacacctctagtg
atgtggtacttttcagtaactatttttaactttataatgttttattttga
agttttcatatttatggatgttttgttgaatgtatttctgtgctcagaga
caactctggagatcccctgggactggagttacagaggattgtgatccacc
atgtgggtgctggaatcgaacccaggtaccctggaagagcagccactatt
cttaactgctgaatcatctctccagtcccaataggttttgttttaaaaca
gtagttcttaacctgttggtctccacccctttcgggtcaaatgacccttt
cacaggagtcacatatcagatatcctgcatatcagatatttatatgattc
ataacaatagcagagttacagttatgaagtagtaataattctatggttgg
ggtcaccacacatgagggactgtattaaagggttacagcagtaggaaggc
taggaactactgttttaaaggatagaccagaataatgaacctgtcatcca
atatcaacaaaactcgtggctaatatttattgttctttctattgcttcct
tttagtaaattatactaaagcaaaatctagataccatttaacttcataaa
atttttatttacatatatatggatatgtacttgtttgtgttgtgtatttg
tgagtaaatacaaagtcatcagacctgaaatatttctcatgtttacaggt
tcttttaataacttcagggaatagtacacacctttaatcccatattcagg
aagcaggaggcagggcagatttgagttggaggccagctagtctacagttc
taaaccagcagggtttcaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_55336831_55338027
seq2: B6Ng01-183A19.b_40_1234

seq1  GAATTCCACAATGACCTCTAATTCCTTAGAAACAAAGGATGACCTTGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAATGACCTCTAATTCCTTAGAAACAAAGGATGACCTTGAAT  50

seq1  TTTTTTTTTTTTTTAAGATTTCTTTTGTTTGTCTTTTTAGGGCAAGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTAAGATTTCTTTTGTTTGTCTTTTTAGGGCAAGATTT  100

seq1  CTCGGTGTGGCCCTGGCTGGCCTCGGGCTCACAGAGGTCCGCCTGCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGTGTGGCCCTGGCTGGCCTCGGGCTCACAGAGGTCCGCCTGCCTCT  150

seq1  GCCTCCCAAGAGCTGGGATGAAAGGCATGTGCCACCATGCCTGGTAAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCCAAGAGCTGGGATGAAAGGCATGTGCCACCATGCCTGGTAAGAT  200

seq1  TTATTTTTACTTTATGTGTATGGTGCCCTGTCTACATGTATGTTTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTACTTTATGTGTATGGTGCCCTGTCTACATGTATGTTTGTGTG  250

seq1  ACATGTTTATACCTGCTACTTTCAGAGTCCAGAAGAAGGTGCTAGATGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTTATACCTGCTACTTTCAGAGTCCAGAAGAAGGTGCTAGATGCC  300

seq1  TTAGAACTGGAGTTATAGATAGTTGCGACTTGCCACGTGTGAGCTGGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACTGGAGTTATAGATAGTTGCGACTTGCCACGTGTGAGCTGGGAA  350

seq1  TTGAACTTATGTCTTCTGGAAGAGCAGTTGGTATTTTGTTTAGATTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTTATGTCTTCTGGAAGAGCAGTTGGTATTTTGTTTAGATTTATT  400

seq1  TATTTATTTTATGTAGATAAGCACACTACTTCAGACACACCAGAAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTTTATGTAGATAAGCACACTACTTCAGACACACCAGAAGAGGG  450

seq1  CATTGGATACCATTACAGACAGTTGTGAGCCACCATGGGGTTGCTGGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGATACCATTACAGACAGTTGTGAGCCACCATGGGGTTGCTGGGAA  500

seq1  TTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTCAGGACCTCAGGAAGAGCAGCCAGTGCTCTTAACCACTGAGCC  550

seq1  ATCTCTCTAGCTTGGACTTTAAATCTTTGATCACCTTCCAAAATGCTGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTCTAGCTTGGACTTTAAATCTTTGATCACCTTCCAAAATGCTGGG  600

seq1  ATCCAACCACCATGCCTTCTCTTTCTGTCTTCCTGTCTTCCAGTCTGTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAACCACCATGCCTTCTCTTTCTGTCTTCCTGTCTTCCAGTCTGTCT  650

seq1  GTCTGTCTTTTTGGTGGTGCTGGAGATTGAGCTGGGGACATCATTCATGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCTTTTTGGTGGTGCTGGAGATTGAGCTGGGGACATCATTCATGC  700

seq1  TTGCAAGCATCTTATCACATGGGCTACATTTTGCTCTTTGAGAATAGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAGCATCTTATCACATGGGCTACATTTTGCTCTTTGAGAATAGACA  750

seq1  GGTTTTATTTGTAATCTTTTCAGTAATAGCCTTTGTCTTTTTTTTCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATTTGTAATCTTTTCAGTAATAGCCTTTGTCTTTTTTTTCTTTT  800

seq1  AAAGATTTATTTATTTTATTTAGATGAGTGCATTGTAGCTGTCTTCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTTATTTAGATGAGTGCATTGTAGCTGTCTTCAGAC  850

seq1  ACACCAGAAGAGGGCATCAGATTCTATTACAGATGATTGTGAGCCACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAGAAGAGGGCATCAGATTCTATTACAGATGATTGTGAGCCACTAT  900

seq1  GTGGTTGTTGGGAATTGAACTCAGGACCTTT-GGAAGAGCAGTCATTGCT  949
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGTTGTTGGGAATTGAACTCAGGACCTTTGGGAAGAGCAGTCATTGCT  950

seq1  CTTAACTCCTGAGACATATCTCCAGTCCCACGGCCTCTGTCTTAATTAGG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACTCCTGAGACATATCTCCAGTCCCACGGCCTCTGTCTTAATTAGG  1000

seq1  GTTTCTATTGCTGTGATGAAA-CACTATGACTAAAAGCAAGTTGGGGAGG  1048
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTTTCTATTGCTGTGATGAAACCACTATGACTAAAAGCAAGTTGGGGAGG  1050

seq1  AAAA-GGTTTATTTAGGTTACACTTT-CACATCACCGTTTTT-CATTGAA  1095
      |||| |||||||||| |||||||||| ||||||||||||||| ||||| |
seq2  AAAAGGGTTTATTTA-GTTACACTTTCCACATCACCGTTTTTCCATTGGA  1099

seq1  GGAAGCCAGGACAGGAA-CTTAAGTGGGGCAGTAACCTGGAGTCAGGAGC  1144
      | |  |||||||||||| ||||||||||||||| | |||   ||||   |
seq2  GAAGCCCAGGACAGGAACCTTAAGTGGGGCAGTTA-CTGAGATCAG--AC  1146

seq1  TGAAGCAGAGGCCATGGAGGGGTGCTGCTTACTGGATTGCTCCA-CA-GT  1192
      || |||  ||| |||| |   ||||||| |||| |||||||||| || ||
seq2  TGGAGCCAAGG-CATGAA---GTGCTGC-TACT-GATTGCTCCATCAGGT  1190

seq1  GCTTG  1197
      |||||
seq2  GCTTG  1195

seq1: chr14_55471434_55472503
seq2: B6Ng01-183A19.g_66_1135 (reverse)

seq1  CTTGAAACCCTGGCTGGTTTAGAACTGTAGACTAGGCTGGCCTCAAACTC  50
      ||||||||||| |||||||||||||||||||||| ||||||||| |||||
seq2  CTTGAAACCCT-GCTGGTTTAGAACTGTAGACTA-GCTGGCCTCCAACTC  48

seq1  AAATCTG-CCTGCCT-CTGCTTCCTGAATATGGGATTAAAGGTGTGTACT  98
      ||||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  AAATCTGCCCTGCCTCCTGCTTCCTGAATATGGGATTAAAGGTGTGTACT  98

seq1  ATTCCCTGAAGTTATTAAAAGAA-CTGTAAACATGAGAAATATTTCAGGT  147
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTCCCTGAAGTTATTAAAAGAACCTGTAAACATGAGAAATATTTCAGGT  148

seq1  CTGATGACTTTGTATTTACTCACAAATACACAAACACAAACAAGTACATA  197
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CTGATGACTTTGTATTTACTCACAAATACAC-AACACAAACAAGTACATA  197

seq1  TCCATATATATGTAAATAAAAATTTTATGAAGTTAAATGGTATCTAGATT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATATATGTAAATAAAAATTTTATGAAGTTAAATGGTATCTAGATT  247

seq1  TTGCTTTAGTATAATTTACTAAAAGGAAGCAATAGAAAGAACAATAAATA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTAGTATAATTTACTAAAAGGAAGCAATAGAAAGAACAATAAATA  297

seq1  TTAGCCACGAGTTTTGTTGATATTGGATGACAGGTTCATTATTCTGGTCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCCACGAGTTTTGTTGATATTGGATGACAGGTTCATTATTCTGGTCT  347

seq1  ATCCTTTAAAACAGTAGTTCCTAGCCTTCCTACTGCTGTAACCCTTTAAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTAAAACAGTAGTTCCTAGCCTTCCTACTGCTGTAACCCTTTAAT  397

seq1  ACAGTCCCTCATGTGTGGTGACCCCAACCATAGAATTATTACTACTTCAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCCCTCATGTGTGGTGACCCCAACCATAGAATTATTACTACTTCAT  447

seq1  AACTGTAACTCTGCTATTGTTATGAATCATATAAATATCTGATATGCAGG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAACTCTGCTATTGTTATGAATCATATAAATATCTGATATGCAGG  497

seq1  ATATCTGATATGTGACTCCTGTGAAAGGGTCATTTGACCCGAAAGGGGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGATATGTGACTCCTGTGAAAGGGTCATTTGACCCGAAAGGGGTG  547

seq1  GAGACCAACAGGTTAAGAACTACTGTTTTAAAACAAAACCTATTGGGACT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCAACAGGTTAAGAACTACTGTTTTAAAACAAAACCTATTGGGACT  597

seq1  GGAGAGATGATTCAGCAGTTAAGAATAGTGGCTGCTCTTCCAGGGTACCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGATGATTCAGCAGTTAAGAATAGTGGCTGCTCTTCCAGGGTACCT  647

seq1  GGGTTCGATTCCAGCACCCACATGGTGGATCACAATCCTCTGTAACTCCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCGATTCCAGCACCCACATGGTGGATCACAATCCTCTGTAACTCCA  697

seq1  GTCCCAGGGGATCTCCAGAGTTGTCTCTGAGCACAGAAATACATTCAACA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGGGGATCTCCAGAGTTGTCTCTGAGCACAGAAATACATTCAACA  747

seq1  AAACATCCATAAATATGAAAACTTCAAAATAAAACATTATAAAGTTAAAA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATCCATAAATATGAAAACTTCAAAATAAAACATTATAAAGTTAAAA  797

seq1  ATAGTTACTGAAAAGTACCACATCACTAGAGGTGTAAGATCTTTGCCTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTACTGAAAAGTACCACATCACTAGAGGTGTAAGATCTTTGCCTCC  847

seq1  CTGGTAATTGTCTTTTGATACAGTAGTCAGATGTTCCAAATCTTCCCAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATTGTCTTTTGATACAGTAGTCAGATGTTCCAAATCTTCCCAAA  897

seq1  GTTCCTCAGATATTTTACATCATCATCATCAAGCACTGAAGCGTACAGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTCAGATATTTTACATCATCATCATCAAGCACTGAAGCGTACAGTT  947

seq1  TCTTCAGTAACAACAAAGGCCTTGTCTCACAGGACGCATCAGCTCTTAAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGTAACAACAAAGGCCTTGTCTCACAGGACGCATCAGCTCTTAAT  997

seq1  CTAGGTTGGGCATGGTGGCACCTTTAATCCCTGCCCTTTTGGAAAACAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTGGGCATGGTGGCACCTTTAATCCCTGCCCTTTTGGAAAACAGA  1047

seq1  AGCAGGCAGATTGCTGTGAATTC  1070
      |||||||||||||||||||||||
seq2  AGCAGGCAGATTGCTGTGAATTC  1070