BAC Information

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BAC

Clone NameB6Ng01-184M07
Chromosome14 (Build37)
Map Location 54,040,501 - 54,084,461
singlet/doubletdoublet
Overlap geneLOC328483
Upstream geneOTTMUSG00000015242, Olfr1509, Olfr1508, Olfr1507, LOC671621, EG633692, LOC100042372, EG667441, LOC100042384, Trav5-1, EG667449, LOC671652, Trav6-2, LOC100042410, LOC546612, LOC627394, LOC100042419, Gm701, LOC382180, EG386506, LOC667476, LOC671927, LOC667481, LOC100042444, LOC640196, LOC627273, LOC100043177, LOC640931, EG627232, LOC100043186, LOC100042470, EG328482, LOC100042479, EG667525, LOC100043197, LOC100038850, LOC667542, EG667547, LOC100043214, EG667562, LOC100043202, LOC667574, Gm26, EG667583, Gm1489, C920008G01Rik, LOC667596, EG667604, LOC547329, LOC639655, LOC634322, EG636127, OTTMUSG00000015163, EG667626, LOC620297, LOC100042560, EG667635, LOC100043218, LOC100042568, LOC100043204, EG627424, LOC100043258, LOC100042574, LOC100042579, LOC100043269, LOC100043270, LOC100043274, EG667681, LOC100042593, EG193574, EG547424, LOC100042601, LOC100043282, A130082M07Rik, LOC100042607, LOC100042614, LOC100042621, LOC100043319, EG547328, LOC100043308
Downstream geneEG667765, EG630061, LOC630086, EG436467, LOC100043322, OTTMUSG00000015124, A430107P09Rik, OTTMUSG00000015049, LOC100043325, A730076H11Rik, LOC627777, A630038E17Rik, EG626545, Dad1, Abhd4, Olfr49, EG666623, LOC667819, LOC100042642, 5330426L24Rik, Oxa1l, Slc7a7, Mrpl52, Mmp14, Lrp10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184M07.bB6Ng01-184M07.g
ACCGA010059GA010060
length1,103412
definitionB6Ng01-184M07.b B6Ng01-184M07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,083,448 - 54,084,461)(54,040,501 - 54,040,913)
sequence
gaattctctgaaaggtcaggctgaatcaagtcaacagctgtaccacttca
agcccagccttttcagtcccaacctgtttttctcaaatattcatgggcaa
aagaatcccaagttcagattttgcttctcaggaaatcaatctaaggcaat
gtgttatttcttttaatactgaaacaaatattgaaatatttatcatacta
aatcacatagcaaatgaccccaaattagtttcttttctgttactttgata
aaatactgagtccaaaaagaaacttatagaagattgtattttggcttagg
ttccagaaggataacagtccatcttagtaggaggaacacatgacagcaag
cagtagtcatggtagctagagcacaaagttcagcaatcgcatctttaacc
acaagcataaatgtagagagtgaacttgaagtggggtgatgctatgactc
tcaaagtccagccccaatgactaacttccttcagcaaggcctcctctctt
gcatgtccctgaaatctgtgctaccaactgggaagtaagtggtcaatatg
tgagaatatgaaaaacattctcactctaaccaccacagacctcttaataa
cataatcaatattcaaatcggaacattatcctggatttttgccaaaatgg
cataaagccagaaaacataaaataagaagctgaacaaatttttaagtatt
tttattctacagcaactttttaatccccctcagtgccatttcatgtatgt
ccatattccccctaagctcctctccagacttcatgccacttttttctata
gcccactatgtccatagtatgttacccatatctccattatgaggacatac
actgaagcatggaaaacttaacagtgaccatactgtgaattagagatgat
tatcccatgaatttgaaggaataaatggctcagtggttaagatactagca
gctctttctgaggacctgtggtagatttccagcacccacatggcagctca
cagctatctgtaaccttggttccaggtgacctgatacccacccacatata
tacataacatgcagttaaagcacatgtacataaaaattattttaagaaag
aga
atggatatagcttctgagtttacaaggaaacacatcctccagattaactg
gctcacatgatctttctactcttcctttgcactgtttcctgagccttagg
tgtgggaattttcgaagatgcatgcactgggactaggctccaccatatat
atatatatgtatatatatagttagttagttagttagttagttagttagtt
agaggaagttaaaggggaattactggatacgtgtgacttgataaggtaaa
tgggaaaaagaaattcattgtagggaagggggatggagattaatacagaa
gaaggggatgatgattaatggaatggaattgaaaaataaaaaataaaccc
tcacacttttggacatctggttttccccctatctatttattttatctatc
tatctatctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_54083448_54084461
seq2: B6Ng01-184M07.b_127_1142 (reverse)

seq1  TCTCT---TTAAAATAAATTTTATGTACATTGGTGCTTTACCTGCATG-T  46
      |||||   ||||||||| ||||||||||||  |||||||| ||||||| |
seq2  TCTCTTTCTTAAAATAATTTTTATGTACAT--GTGCTTTAACTGCATGTT  48

seq1  ATGTATATATGTGGGTGGGTATCAGGTCACCTGGAACCAAGGTTACAGAT  96
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATATATGTGGGTGGGTATCAGGTCACCTGGAACCAAGGTTACAGAT  98

seq1  AGCTGTGAGCTGCCATGTGGGTGCTGGAAATCTACCACAGGTCCTCAGAA  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAGCTGCCATGTGGGTGCTGGAAATCTACCACAGGTCCTCAGAA  148

seq1  AGAGCTGCTAGTATCTTAACCACTGAGCCATTTATTCCTTCAAATTCATG  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTGCTAGTATCTTAACCACTGAGCCATTTATTCCTTCAAATTCATG  198

seq1  GGATAATCATCTCTAATTCACAGTATGGTCACTGTTAAGTTTTCCATGCT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAATCATCTCTAATTCACAGTATGGTCACTGTTAAGTTTTCCATGCT  248

seq1  TCAGTGTATGTCCTCATAATGGAGATATGGGTAACATACTATGGACATAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTATGTCCTCATAATGGAGATATGGGTAACATACTATGGACATAG  298

seq1  TGGGCTATAGAAAAAAGTGGCATGAAGTCTGGAGAGGAGCTTAGGGGGAA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTATAGAAAAAAGTGGCATGAAGTCTGGAGAGGAGCTTAGGGGGAA  348

seq1  TATGGACATACATGAAATGGCACTGAGGGGGATTAAAAAGTTGCTGTAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGACATACATGAAATGGCACTGAGGGGGATTAAAAAGTTGCTGTAGA  398

seq1  ATAAAAATACTTAAAAATTTGTTCAGCTTCTTATTTTATGTTTTCTGGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATACTTAAAAATTTGTTCAGCTTCTTATTTTATGTTTTCTGGCT  448

seq1  TTATGCCATTTTGGCAAAAATCCAGGATAATGTTCCGATTTGAATATTGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCCATTTTGGCAAAAATCCAGGATAATGTTCCGATTTGAATATTGA  498

seq1  TTATGTTATTAAGAGGTCTGTGGTGGTTAGAGTGAGAATGTTTTTCATAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATTAAGAGGTCTGTGGTGGTTAGAGTGAGAATGTTTTTCATAT  548

seq1  TCTCACATATTGACCACTTACTTCCCAGTTGGTAGCACAGATTTCAGGGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATATTGACCACTTACTTCCCAGTTGGTAGCACAGATTTCAGGGA  598

seq1  CATGCAAGAGAGGAGGCCTTGCTGAAGGAAGTTAGTCATTGGGGCTGGAC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGAGAGGAGGCCTTGCTGAAGGAAGTTAGTCATTGGGGCTGGAC  648

seq1  TTTGAGAGTCATAGCATCACCCCACTTCAAGTTCACTCTCTACATTTATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGAGTCATAGCATCACCCCACTTCAAGTTCACTCTCTACATTTATG  698

seq1  CTTGTGGTTAAAGATGCGATTGCTGAACTTTGTGCTCTAGCTACCATGAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGTTAAAGATGCGATTGCTGAACTTTGTGCTCTAGCTACCATGAC  748

seq1  TACTGCTTGCTGTCATGTGTTCCTCCTACTAAGATGGACTGTTATCCTTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTGCTGTCATGTGTTCCTCCTACTAAGATGGACTGTTATCCTTC  798

seq1  TGGAACCTAAGCCAAAATACAATCTTCTATAAGTTTCTTTTTGGACTCAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAACCTAAGCCAAAATACAATCTTCTATAAGTTTCTTTTTGGACTCAG  848

seq1  TATTTTATCAAAGTAACAGAAAAGAAACTAATTTGGGGTCATTTGCTATG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATCAAAGTAACAGAAAAGAAACTAATTTGGGGTCATTTGCTATG  898

seq1  TGATTTAGTATGATAAATATTTCAATATTTGTTTCAGTATTAAAAGAAAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTAGTATGATAAATATTTCAATATTTGTTTCAGTATTAAAAGAAAT  948

seq1  AACACATTGCCTTAGATTGATTTCCTGAGAAGCAAAATCTGAACTTGGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATTGCCTTAGATTGATTTCCTGAGAAGCAAAATCTGAACTTGGGA  998

seq1  TTCTTTTGCCCATGAATA  1014
      ||||||||||||||||||
seq2  TTCTTTTGCCCATGAATA  1016

seq1: chr14_54040501_54040913
seq2: B6Ng01-184M07.g_65_482

seq1  GAATTCATGGATATAGCTTCTGAGTTTACAAGGAAACACATCCTCCAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGATATAGCTTCTGAGTTTACAAGGAAACACATCCTCCAGAT  50

seq1  TAACTGGCTCACATGATCTTTCTACTCTTCCTTTGCACTGTTTCCTGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGGCTCACATGATCTTTCTACTCTTCCTTTGCACTGTTTCCTGAGC  100

seq1  CTTAGGTGTGGGAATTTTCGAAGATGCATGCACTGGGACTAGGCTCCACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTGTGGGAATTTTCGAAGATGCATGCACTGGGACTAGGCTCCACC  150

seq1  ATATATATATATATGTATATATATAGTTAGTTAGTTAGTTAGTTAGTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATGTATATATATAGTTAGTTAGTTAGTTAGTTAGTTAG  200

seq1  TTAGTTAGAGGAAGTTAAAGGGGAATTACTGGATACGTGTGACTTGATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTAGAGGAAGTTAAAGGGGAATTACTGGATACGTGTGACTTGATAA  250

seq1  GGTAAATGGGAAAAAGAAATTCATTGTAGGGAAGGGGGATGGAGATTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAATGGGAAAAAGAAATTCATTGTAGGGAAGGGGGATGGAGATTAAT  300

seq1  ACAGAAGAAGGGGATGATGATTAATGGAATGGAATTGAAAAATAAAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGAAGGGGATGATGATTAATGGAATGGAATTGAAAAATAAAAAAT  350

seq1  AAACCCTCACACTTTTGGACATCTGGTTTTCCCCCTATCTA-----TCTA  395
      |||||||||||||||||||||||||||||||||||||||||     | ||
seq2  AAACCCTCACACTTTTGGACATCTGGTTTTCCCCCTATCTATTTATTTTA  400

seq1  TCTATCTATCTATCTATC  413
      ||||||||||||||||||
seq2  TCTATCTATCTATCTATC  418