BAC Information

Click to search

BAC

Clone NameB6Ng01-184M08
Chromosome14 (Build37)
Map Location 111,238,312 - 111,239,467
singlet/doubletsinglet
Overlap genenone
Upstream geneSlitrk6, EG668772
Downstream geneEG622052, LOC100043491, LOC100043494, Slitrk5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-184M08.bB6Ng01-184M08.g
ACCGA010061GA010062
length1,1771,216
definitionB6Ng01-184M08.b B6Ng01-184M08.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccctccacatcccctctcccactcagttccctccctccttttgt
cttttctgactattttatttcccctcctaagtgaaaatcaaccattcaca
ctatatttttcttcattagctactttgggtctctgaactgtagtgtggat
aacctatattttggggctaatatccatcctcttataagtgaatacataac
atgcatgtccttttgggattgggttatcacactcccccaggatgatattc
tcaagttacatccatttgcctacacaattcatggtatctttggttttggt
agccatatattattctactgtgtagatgtaccacaatgtctttatcagtt
ttcagttgagagacatcgaggttgtttccagtttctggctattatgaaaa
aggttgctgtgaacatagttgaacaagtgtctgtgggatagaagtaccta
tttcttataaactccaagaaaagtttaagtagctatgattactatttcag
tagtaaataatgaaagcttaactagtttgaataaaaaagaagagtagatt
acttaatttttgtgcttttatgcaaagttgaataacaacattctgaacag
ctatcgaatacattatgatgctgtataaaacctcaatttaacaatgggtt
ttgatggtatgtccttaggaaattatcacagttactctttgtattattag
ttggtaattttgctctgagtaaaatataattggttgtcgtagttctgcac
atacatttgacattaggaatccaggttgagaatgcatttagaaactaaaa
tgtaacagaaactccagtttacaacatgtgaaagacttaataatggtccc
cagtgatgtagagagcatgttcttaatgtgacaatggtaattctttcttc
tatgatatagtaaataggtgccatttgtttgtttgcttgcttatcaatta
tgcttattatattattttctgtttttggttcctctgtgctctctacttca
taccaccagtgacattcagcaaaagtacagatgttcaccagattttttct
tggaggacaaggcatctgttgaccacgtttttgaaaagatggtgtgtgga
gaccaatttttgttccaaattgttacctttacaatacctgtgtgtcaatt
tagtgtttagggttaagggagtcaacc

gaattctcacttgaggaatactgaatggctgagaagcacctgaaaaaatg
ttcaatatccttaatcatcagggaaatgcaaatcaaaacaatcctgagat
tccatctaataccagtcagaatgactaagatcaaaaattcaggtgacagt
agatgctggtgaggatgtggagaaagaagacactcctccattgttagtgg
gattgcaagcttgtacaaccactctggaaatcagtctggtggttcctcag
aaaattggatatattactactggaagatccagatattcctctccagggca
tatacccagaagatgttccaacttataataaggacacatgctcccccctt
tatccatgagaataattccccctacactccctacccccacacaatcagac
ctctaaactctctttggcctccagtttcttgagtgttaggtatatcttgt
ctaactgaacacagaccctgcagtcctcaacttcatatgagttagggacc
tcattatcaggtagtgtatactgcctagtttgtggtctagtgtttgagaa
atctcagaggataaggttgattaagaagaaattaagaagatctcagaaga
tggaaagatttcccatgctcatggattggcaggatcaatatagtaaaaat
ggctatcttgccaaaagcaatctacagattcaatgcaatccccatcaaaa
ttccaattcaattcttcaacaaattagaaagggcaatatgcaaattcatc
tggaataacaaaaaaacctaggatagcaaaaactcttctcaaggataaaa
gaacctctggtgtaatcaccatgcctgacctaaagctgtactacagagca
attgtgataaaatctgcatggtactcgtatactgacagacaagtagacca
atggaattagaatttgagacccagaatgaaccccacacatctatggtcaa
cttgatctttgacaaggggagccaaaccatccagtggaaaaaaaagaaca
gcattttcaacaaattgatgctggccacaacctgggccgttatcattgtt
ggaagaaatgagaatgaatccattcctatctcccttgtgactagggtcaa
tctagtggaatacgaactccacataaccgaagacatcttgaaatgattag
agaagaaagtagtaaccttgcagaattgggctacagggaaatattctctg
tgcatatgaagcacgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111238312_111239467
seq2: B6Ng01-184M08.b_41_1217

seq1  GAATTCCCCTCCACATCCCCTCTCCCACTCAGTTCCCTCCCTCCTTTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCTCCACATCCCCTCTCCCACTCAGTTCCCTCCCTCCTTTTGT  50

seq1  CTTTTCTGACTATTTTATTTCCCCTCCTAAGTGAAAATCAACCATTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTGACTATTTTATTTCCCCTCCTAAGTGAAAATCAACCATTCACA  100

seq1  CTATATTTTTCTTCATTAGCTACTTTGGGTCTCTGAACTGTAGTGTGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTTTTCTTCATTAGCTACTTTGGGTCTCTGAACTGTAGTGTGGAT  150

seq1  AACCTATATTTTGGGGCTAATATCCATCCTCTTATAAGTGAATACATAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTATATTTTGGGGCTAATATCCATCCTCTTATAAGTGAATACATAAC  200

seq1  ATGCATGTCCTTTTGGGATTGGGTTATCACACTCCCCCAGGATGATATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTCCTTTTGGGATTGGGTTATCACACTCCCCCAGGATGATATTC  250

seq1  TCAAGTTACATCCATTTGCCTACACAATTCATGGTATCTTTGGTTTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTACATCCATTTGCCTACACAATTCATGGTATCTTTGGTTTTGGT  300

seq1  AGCCATATATTATTCTACTGTGTAGATGTACCACAATGTCTTTATCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATATATTATTCTACTGTGTAGATGTACCACAATGTCTTTATCAGTT  350

seq1  TTCAGTTGAGAGACATCGAGGTTGTTTCCAGTTTCTGGCTATTATGAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTTGAGAGACATCGAGGTTGTTTCCAGTTTCTGGCTATTATGAAAA  400

seq1  AGGTTGCTGTGAACATAGTTGAACAAGTGTCTGTGGGATAGAAGTACCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTGTGAACATAGTTGAACAAGTGTCTGTGGGATAGAAGTACCTA  450

seq1  TTTCTTATAAACTCCAAGAAAAGTTTAAGTAGCTATGATTACTATTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATAAACTCCAAGAAAAGTTTAAGTAGCTATGATTACTATTTCAG  500

seq1  TAGTAAATAATGAAAGCTTAACTAGTTTGAATAAAAAAGAAGAGTAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATAATGAAAGCTTAACTAGTTTGAATAAAAAAGAAGAGTAGATT  550

seq1  ACTTAATTTTTGTGCTTTTATGCAAAGTTGAATAACAACATTCTGAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTTTTGTGCTTTTATGCAAAGTTGAATAACAACATTCTGAACAG  600

seq1  CTATCGAATACATTATGATGCTGTATAAAACCTCAATTTAACAATGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCGAATACATTATGATGCTGTATAAAACCTCAATTTAACAATGGGTT  650

seq1  TTGATGGTATGTCCTTAGGAAATTATCACAGTTACTCTTTGTATTATTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGGTATGTCCTTAGGAAATTATCACAGTTACTCTTTGTATTATTAG  700

seq1  TTGGTAATTTTGCTCTGAGTAAAATATAATTGGTTGTCGTAGTTCTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATTTTGCTCTGAGTAAAATATAATTGGTTGTCGTAGTTCTGCAC  750

seq1  ATACATTTGACATTAGGAATCCAGGTTGAGAATGCATTTAGAAACTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTGACATTAGGAATCCAGGTTGAGAATGCATTTAGAAACTAAAA  800

seq1  TGTAACAGAAACTCCAGTTTACAACATGTGAAAGACTTAATAATGGTCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAGAAACTCCAGTTTACAACATGTGAAAGACTTAATAATGGTCCC  850

seq1  CAGTGATGTAGAGAGCATGTTCTTAATGTGACAAATGGTAATTCTTTCTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGTGATGTAGAGAGCATGTTCTTAATGTGAC-AATGGTAATTCTTTCTT  899

seq1  CTATGATATAGTAAATAGGTGCCATTTGTTTGTTTGCTTGCTTATCAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGATATAGTAAATAGGTGCCATTTGTTTGTTTGCTTGCTTATCAATT  949

seq1  ATGCTTATTATATTATTTTCTGTTTTTGGTT-CTCTGTGCTCTCTACTTC  999
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGCTTATTATATTATTTTCTGTTTTTGGTTCCTCTGTGCTCTCTACTTC  999

seq1  ATACCA-CAGTGACATTCAGCAAAAGTACAGAATGTTCA-CAGA-TTTTT  1046
      |||||| |||||||||||||||||||||||| ||||||| |||| |||||
seq2  ATACCACCAGTGACATTCAGCAAAAGTACAG-ATGTTCACCAGATTTTTT  1048

seq1  CT--GAGGACAAGGCATCTG-TGA-CACG-TTTTGAAAAGAT-GTGTGT-  1089
      ||  |||||||||||||||| ||| |||| |||||||||||| |||||| 
seq2  CTTGGAGGACAAGGCATCTGTTGACCACGTTTTTGAAAAGATGGTGTGTG  1098

seq1  GAGA-CAAATTTTGT--CCAATTGT--ACTTTACAATA-CTGTGTGTCA-  1132
      |||| ||| ||||||  | ||||||   |||||||||| |||||||||| 
seq2  GAGACCAATTTTTGTTCCAAATTGTTACCTTTACAATACCTGTGTGTCAA  1148

seq1  -TTAGTG--TAGTGTTA--GGAGTCAACC  1156
       ||||||  ||| ||||  ||||||||||
seq2  TTTAGTGTTTAGGGTTAAGGGAGTCAACC  1177


| Home | SequenceCutter | Blast | Download |