BAC Information

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BAC

Clone NameB6Ng01-185E09
Chromosome14 (Build37)
Map Location 80,399,714 - 80,570,313
singlet/doubletdoublet
Overlap geneOlfm4
Upstream gene1300010F03Rik, LOC100043765, AU017455, 1190002H23Rik, Narg1l, Mtrf1, Kbtbd7, EG432879, Wbp4, Elf1, LOC668560, Sugt1, Lect1, Pcdh8, EG629734
Downstream geneLOC672828
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185E09.bB6Ng01-185E09.g
ACCGA010431GA010432
length1,207203
definitionB6Ng01-185E09.b B6Ng01-185E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,569,120 - 80,570,313)(80,399,714 - 80,399,916)
sequence
gaattcttgctttaaaataagtgcccccttttcccagaccaggaccagtc
agagtcttcagctccaaaaccaaagacatttgcaactctttgagattcat
tatccttctctgctgcagttttggggtttagaaattctggttgtctgcaa
atatggacttttttcaagggagaaaaatgaagcagctgtttaattataaa
caggttactctgccagagggagtataggctcccaccagagaaagtcctgc
ttaaagaaagtcagtccctcactctgagtattaatctcagaattgtggca
cttgtctccagacaatgtgtggacctgtatgtggtcatcagaagtgatga
tgcttagtcttgctgggtttgattaagttgcaagcctatccccttcatgc
taggcatgcaaagacaatagtggccaacactggtccataggtcagcaatg
gaccttcacaggctaaccttcagtacctccactagggtaaatacaatgct
cctctgagtgtgggagctaggggatgctactagaattctttcctcatgga
gaaacaagggttactcttaagccaaaggtcagatagccatagtgcactta
ccagaaagtcctacctagcccaaggactcgcctcactttaataatatttt
aacttatttctaacccaatatatcagtgtttaaagagcctcttgccttac
aaactagagtttaaatgaatgcttattctccggttttttagatttatgtt
ttttaaaacaaaatttggatgagaaatgttatctttgactctccatccaa
taagatacatttctcctgggggcctctaggttcttcgcaattggataaaa
cacttaagaatattattttgttcatttcatacacgatttctttctattat
tcatttcttttttaagaaattgtccatgggcaatgaagcaagcttcaagt
cagaattttactttagaaaatgttgtctacagaagttaaagaaattgtca
tttacccaccacttccaagttattaattagactttaggctgttttgccag
ctagttaccagagggaacccatgggtgattagctgcactaattgggattt
cagtgggtctgattacaacacaaggattattaggaattattcctcccttg
ccctgtgataagaagaagctgtcttactgttttgatggtggttttagttc
gtttcac
ctcaaaatgggagcaaatacccagaagtcatttctaggagaaggacaaag
gttactatttttttccccctaggagcctctaaactctatctcatctacaa
aggctactttgattctgtctccttcaaggaagtatcaagttagaaatcag
atattggcttgaagaaatttatgtaagttaatatttgttgggggtgggga
ggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_80569120_80570313
seq2: B6Ng01-185E09.b_47_1253 (reverse)

seq1  GTGAAACG-ACTTAAACCACCATCTAAACAGTTATGACAAAGCTTCTTCT  49
      |||||||| ||| ||||||||||| |||||| || |||  ||||||||||
seq2  GTGAAACGAACTAAAACCACCATCAAAACAG-TAAGAC--AGCTTCTTCT  47

seq1  TTTTCCAGGGC-AGGGAGGTATAA-TCCT-ATTATCTTTGTGTTGTTATC  96
      | |  |||||| ||||||| |||| |||| || ||| ||||||||| |||
seq2  TATCACAGGGCAAGGGAGGAATAATTCCTAATAATCCTTGTGTTGTAATC  97

seq1  AGACCCACTTGAAATTCCAATTAGTGCAGCTAATCA-CCATGGGTT-CCT  144
      |||||||| |||||| |||||||||||||||||||| ||||||||| |||
seq2  AGACCCAC-TGAAATCCCAATTAGTGCAGCTAATCACCCATGGGTTCCCT  146

seq1  CTGGTACTTAGCTGGC-AAACAGC--TAAGTCTAATTAAT-ACTTTGGAG  190
      ||||||  |||||||| |||||||   ||||||||||||| |||| | ||
seq2  CTGGTAACTAGCTGGCAAAACAGCCTAAAGTCTAATTAATAACTTGGAAG  196

seq1  TGGTGGGTAAATGAC-ATTTCTTTAACTTCTGTAGAC-ACATTTTCT-AA  237
      ||||||||||||||| ||||||||||||||||||||| ||||||||| ||
seq2  TGGTGGGTAAATGACAATTTCTTTAACTTCTGTAGACAACATTTTCTAAA  246

seq1  GTAAAATTCTGACTTGAAGCTTGCTTCATTGCCAATGGACAATTTCTTAA  287
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GTAAAATTCTGACTTGAAGCTTGCTTCATTGCCCATGGACAATTTCTTAA  296

seq1  AAA--GAATG-ATTATAGAAAG-AATCGTGTATGAAATGAACAAAATAAT  333
      |||   |||| || |||||||| |||||||||||||||||||||||||||
seq2  AAAAGAAATGAATAATAGAAAGAAATCGTGTATGAAATGAACAAAATAAT  346

seq1  ATTCTTAAGTGTTTTATCCAATTGCGAAGAACCTAGAGGCCCCCAGGAGA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAGTGTTTTATCCAATTGCGAAGAACCTAGAGGCCCCCAGGAGA  396

seq1  AATGTATCTTATTGGATGGAGAGTCAAAGATAACATTTCTCATCCAAATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATCTTATTGGATGGAGAGTCAAAGATAACATTTCTCATCCAAATT  446

seq1  TTGTTTTAAAAAACATAAATCTAAAAAACCGGAGAATAAGCATTCATTTA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTAAAAAACATAAATCTAAAAAACCGGAGAATAAGCATTCATTTA  496

seq1  AACTCTAGTTTGTAAGGCAAGAGGCTCTTTAAACACTGATATATTGGGTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTAGTTTGTAAGGCAAGAGGCTCTTTAAACACTGATATATTGGGTT  546

seq1  AGAAATAAGTTAAAATATTATTAAAGTGAGGCGAGTCCTTGGGCTAGGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATAAGTTAAAATATTATTAAAGTGAGGCGAGTCCTTGGGCTAGGTA  596

seq1  GGACTTTCTGGTAAGTGCACTATGGCTATCTGACCTTTGGCTTAAGAGTA  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTCTGGTAAGTGCACTATGGCTATCTGACCTTTGGCTTAAGAGTA  646

seq1  ACCCTTGTTTCTCCATGAGGAAAGAATTCTAGTAGCATCCCCTAGCTCCC  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTGTTTCTCCATGAGGAAAGAATTCTAGTAGCATCCCCTAGCTCCC  696

seq1  ACACTCAGAGGAGCATTGTATTTACCCTAGTGGAGGTACTGAAGGTTAGC  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCAGAGGAGCATTGTATTTACCCTAGTGGAGGTACTGAAGGTTAGC  746

seq1  CTGTGAAGGTCCATTGCTGACCTATGGACCAGTGTTGGCCACTATTGTCT  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAAGGTCCATTGCTGACCTATGGACCAGTGTTGGCCACTATTGTCT  796

seq1  TTGCATGCCTAGCATGAAGGGGATAGGCTTGCAACTTAATCAAACCCAGC  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCCTAGCATGAAGGGGATAGGCTTGCAACTTAATCAAACCCAGC  846

seq1  AAGACTAAGCATCATCACTTCTGATGACCACATACAGGTCCACACATTGT  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTAAGCATCATCACTTCTGATGACCACATACAGGTCCACACATTGT  896

seq1  CTGGAGACAAGTGCCACAATTCTGAGATTAATACTCAGAGTGAGGGACTG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGACAAGTGCCACAATTCTGAGATTAATACTCAGAGTGAGGGACTG  946

seq1  ACTTTCTTTAAGCAGGACTTTCTCTGGTGGGAGCCTATACTCCCTCTGGC  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTTTAAGCAGGACTTTCTCTGGTGGGAGCCTATACTCCCTCTGGC  996

seq1  AGAGTAACCTGTTTATAATTAAACAGCTGCTTCATTTTTCTCCCTTGAAA  1033
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAACCTGTTTATAATTAAACAGCTGCTTCATTTTTCTCCCTTGAAA  1046

seq1  AAAGTCCATATTTGCAGACAACCAGAATTTCTAAACCCCAAAACTGCAGC  1083
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCCATATTTGCAGACAACCAGAATTTCTAAACCCCAAAACTGCAGC  1096

seq1  AGAGAAGGATAATGAATCTCAAAGAGTTGCAAATGTCTTTGGTTTTGGAG  1133
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGGATAATGAATCTCAAAGAGTTGCAAATGTCTTTGGTTTTGGAG  1146

seq1  CTGAAGACTCTGACTGGTCCTGGTCTGGGAAAAGGGGGCACTTATTTTAA  1183
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGACTCTGACTGGTCCTGGTCTGGGAAAAGGGGGCACTTATTTTAA  1196

seq1  AGCAAGAATTC  1194
      |||||||||||
seq2  AGCAAGAATTC  1207

seq1: chr14_80399714_80399916
seq2: B6Ng01-185E09.g_72_274

seq1  CTCAAAATGGGAGCAAATACCCAGAAGTCATTTCTAGGAGAAGGACAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATGGGAGCAAATACCCAGAAGTCATTTCTAGGAGAAGGACAAAG  50

seq1  GTTACTATTTTTTTCCCCCTAGGAGCCTCTAAACTCTATCTCATCTACAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTATTTTTTTCCCCCTAGGAGCCTCTAAACTCTATCTCATCTACAA  100

seq1  AGGCTACTTTGATTCTGTCTCCTTCAAGGAAGTATCAAGTTAGAAATCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTACTTTGATTCTGTCTCCTTCAAGGAAGTATCAAGTTAGAAATCAG  150

seq1  ATATTGGCTTGAAGAAATTTATGTAAGTTAATATTTGTTGGGGGTGGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCTTGAAGAAATTTATGTAAGTTAATATTTGTTGGGGGTGGGGA  200

seq1  GGG  203
      |||
seq2  GGG  203