BAC Information

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BAC

Clone NameB6Ng01-185G18
Chromosome14 (Build37)
Map Location 71,812,956 - 71,987,825
singlet/doubletdoublet
Overlap geneLOC100043136
Upstream genePiwil2, Polr3d, Phyhip, Bmp1, Sftpc, Lgi3, Reep4, Hr, Nudt18, Rai16, Epb4.9, Fgf17, Npm2, Xpo7, LOC668443, Dok2, Gfra2, LOC100043132
Downstream geneLOC668477, LOC668482, LOC675957, Fndc3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185G18.bB6Ng01-185G18.g
ACCGA010539GA010540
length1,098571
definitionB6Ng01-185G18.b B6Ng01-185G18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,812,956 - 71,814,036)(71,987,250 - 71,987,825)
sequence
gaattcattcttatcctcatctttatgagtccaagcccttttcctgagaa
ggtgagaaccaatccctactttacaggcctcatgtgaatctactttccaa
caggatacaacgatgaatctagaaccttgacaaatagtcatgggttggga
ccacagccatggtttcatcgttactatatgcttggccaggaaagtatatg
ggatgtaggcacttcttattttttgtgtgttttgaatggtgcccattgta
ttgttctttctgccacttgttaatggcaggaaatataaataaaaaactta
aagtaaagccaagcagtagtggaacatgcctttaatcccagcacttggga
ggcagaggcaggtggattttaagttcaaggccagcctggactacagagtg
agttccaggacagccagagctattcagagaaatcctgtctcaacgccctc
ccacccccaaaagcttaaagtaatacagaagacttttagagtctccctta
tctatacatccagtggtagtctgaaaatgcatgtagtatttagctccata
tcagcatttttccgtatatgctttgaattattgccatatagtgccaaagt
taatctgtccatttttttttttattccatgctgtctcgtttgtatcactt
cttgttgtggtttgatctggagtacaacttgcaatgaatctgatcattaa
tttgacattggttagaaaaacctgggagataaacctctgtgggatttttt
tttttttattgtgctaaagtttttatgggaaagacccatcttaaattgag
gcatggaccattctttggatggatgatgcttggactgcacataaatgaag
agaatcttctgactacttgggatgcatccattactctttctgactgttgg
atgtattgtggccaatttgcttcaagattcctgctactttgactttccca
ctatgttagaccattaccttgatctattgagtttagggtaaaacattttc
tttccttgagttgctgttgacagggaagtttttatcaaacaacatagata
ggaaaacagaagttcctaattggcaatgccttggtcatccctcctgtt
atcttttagggagaaatatattaataaaatatttaatggcgtgtagggta
tgtcttgaaatgtagcatgcatggtaattacaagaaatcaaatgggcaaa
aatgtatgacaatgactaattacttgaaaaaagaatactgaagtccaagt
ctatgttcatcaaaattcagatgacaagtcttagccagggtgtatagatg
ttggatcctttgtgtgttgtgctaaaagtagatcagaatgggggtaaagc
ttggtaggagctcaagtagtagttatcagttaccatatggttcaataatt
ctatatagaatagaaaaagactgaggaaaatatatctgcacaccctttcc
aatcaaaactgttcacaaccagataacagtttaacgtgtgtgtgtgtgta
tgtgtgtgtgtgtgtgtgtgtgtgtgtaatcctgatatatttaaactaga
taaaaaatattggtatgtgtttcatgaatacacctcaaacatattgtgta
aagggaaaaacattagacataaaagattatgcaatgtgcaatgccattta
tataatatatctatatatcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_71812956_71814036
seq2: B6Ng01-185G18.b_41_1138

seq1  GAATTCATTCTTATCCTCATCTTTATGAGTCCAAGCCCTTTTCCTGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTTATCCTCATCTTTATGAGTCCAAGCCCTTTTCCTGAGAA  50

seq1  GGTGAGAACCAATCCCTACTTTACAGGCCTCATGTGAATCTACTTTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGAACCAATCCCTACTTTACAGGCCTCATGTGAATCTACTTTCCAA  100

seq1  CAGGATACAACGATGAATCTAGAACCTTGACAAATAGTCATGGGTTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACAACGATGAATCTAGAACCTTGACAAATAGTCATGGGTTGGGA  150

seq1  CCACAGCCATGGTTTCATCGTTACTATATGCTTGGCCAGGAAAGTATATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCCATGGTTTCATCGTTACTATATGCTTGGCCAGGAAAGTATATG  200

seq1  GGATGTAGGCACTTCTTATTTTTTGTGTGTTTTGAATGGTGCCCATTGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTAGGCACTTCTTATTTTTTGTGTGTTTTGAATGGTGCCCATTGTA  250

seq1  TTGTTCTTTCTGCCACTTGTTAATGGCAGGAAATATAAATAAAAAACTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTTTCTGCCACTTGTTAATGGCAGGAAATATAAATAAAAAACTTA  300

seq1  AAGTAAAGCCAAGCAGTAGTGGAACATGCCTTTAATCCCAGCACTTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAGCCAAGCAGTAGTGGAACATGCCTTTAATCCCAGCACTTGGGA  350

seq1  GGCAGAGGCAGGTGGATTTTAAGTTCAAGGCCAGCCTGGACTACAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAGGCAGGTGGATTTTAAGTTCAAGGCCAGCCTGGACTACAGAGTG  400

seq1  AGTTCCAGGACAGCCAGAGCTATTCAGAGAAATCCTGTCTCAACGCCCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCAGGACAGCCAGAGCTATTCAGAGAAATCCTGTCTCAACGCCCTC  450

seq1  CCACCCCCAAAAGCTTAAAGTAATACAGAAGACTTTTAGAGTCTCCCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCCAAAAGCTTAAAGTAATACAGAAGACTTTTAGAGTCTCCCTTA  500

seq1  TCTATACATCCAGTGGTAGTCTGAAAATGCATGTAGTATTTAGCTCCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACATCCAGTGGTAGTCTGAAAATGCATGTAGTATTTAGCTCCATA  550

seq1  TCAGCATTTTTCCGTATATGCTTTGAATTATTGCCATATAGTGCCAAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATTTTTCCGTATATGCTTTGAATTATTGCCATATAGTGCCAAAGT  600

seq1  TAATCTGTCCATTTTTTTTTTTATTCCATGCTGTCTCGTTTGTATCACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGTCCATTTTTTTTTTTATTCCATGCTGTCTCGTTTGTATCACTT  650

seq1  CTTGTTGTGGTTTGATCTGGAGTACAACTTGCAATGAATCTGATCATTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTGGTTTGATCTGGAGTACAACTTGCAATGAATCTGATCATTAA  700

seq1  TTTGACATTGGTTAG-AAAACCTGGGAGATAAACCTCTGTGGGATTTTTT  749
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TTTGACATTGGTTAGAAAAACCTGGGAGATAAACCTCTGTGGGATTTTTT  750

seq1  TTTTTTTATTGTGCTAA--GTTTTATGGG-AAGACCCATCTT-AATTGAG  795
      |||||||||||||||||   ||||||||| |||||||||||| |||||||
seq2  TTTTTTTATTGTGCTAAAGTTTTTATGGGAAAGACCCATCTTAAATTGAG  800

seq1  GCATGGACCATTCTTTGGATGGATGATGC-TGGACTGCACAT-AATGAAG  843
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GCATGGACCATTCTTTGGATGGATGATGCTTGGACTGCACATAAATGAAG  850

seq1  AGAATCTTCTGACTAC-TGGGATGCATCCATTACTCTTTCTGACTG-TGG  891
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  AGAATCTTCTGACTACTTGGGATGCATCCATTACTCTTTCTGACTGTTGG  900

seq1  ATGTATTGTGGCCAA-TTGCTTCAAGA-TCCTGCTAC-TTGACTTTCCAA  938
      ||||||||||||||| ||||||||||| ||||||||| |||||||||| |
seq2  ATGTATTGTGGCCAATTTGCTTCAAGATTCCTGCTACTTTGACTTTCCCA  950

seq1  CTATGTTAGA-CAATACCTTGATCTA-TGAG-TTAGGGT-AAACATTTTC  984
      |||||||||| || |||||||||||| |||| ||||||| ||||||||||
seq2  CTATGTTAGACCATTACCTTGATCTATTGAGTTTAGGGTAAAACATTTTC  1000

seq1  -TTCCTTGAGTTGCTGTTGACAGGG-AGTTTTTATCAAAACAACA-AGAA  1031
       |||||||||||||||||||||||| |||||||||| |||||||| ||| 
seq2  TTTCCTTGAGTTGCTGTTGACAGGGAAGTTTTTATC-AAACAACATAGAT  1049

seq1  AGGAAAACAAGAAAAGTTCCTAA-TGGCAATGCCTTGGTCATCCCT-CTG  1079
      ||||||||   | |||||||||| |||||||||||||||||||||| |||
seq2  AGGAAAAC---AGAAGTTCCTAATTGGCAATGCCTTGGTCATCCCTCCTG  1096

seq1  TT  1081
      ||
seq2  TT  1098

seq1: chr14_71987250_71987825
seq2: B6Ng01-185G18.g_66_641 (reverse)

seq1  GGATATATAGATATATTATATAAATGGCATTGCACATTGCATAATCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATATAGATATATTATATAAATGGCATTGCACATTGCATAATCTTTT  50

seq1  ATGTCTAATGTTTTTCCCTTTACACAATATGTTTGAGGTGTATTCATGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTAATGTTTTTCCCTTTACACAATATGTTTGAGGTGTATTCATGAA  100

seq1  ACACATACCAATATTTTTTCTCTAGTTTAAATATATCAGGATTATACACA  150
      ||||||||||||||||||| |||||||||||||||||||||||| |||||
seq2  ACACATACCAATATTTTTTATCTAGTTTAAATATATCAGGATTACACACA  150

seq1  CACACACACACACACACACATACACACACACACACGTTAAACTGTTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACACACACACACGTTAAACTGTTATCT  200

seq1  GGTTGTGAACAGTTTTGATTGGAAAGGGTGTGCAGATATATTTTCCTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGTGAACAGTTTTGATTGGAAAGGGTGTGCAGATATATTTTCCTCAG  250

seq1  TCTTTTTCTATTCTATATAGAATTATTGAACCATATGGTAACTGATAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTATTCTATATAGAATTATTGAACCATATGGTAACTGATAACT  300

seq1  ACTACTTGAGCTCCTACCAAGCTTTACCCCCATTCTGATCTACTTTTAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGAGCTCCTACCAAGCTTTACCCCCATTCTGATCTACTTTTAGC  350

seq1  ACAACACACAAAGGATCCAACATCTATACACCCTGGCTAAGACTTGTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACACACAAAGGATCCAACATCTATACACCCTGGCTAAGACTTGTCAT  400

seq1  CTGAATTTTGATGAACATAGACTTGGACTTCAGTATTCTTTTTTCAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTTTGATGAACATAGACTTGGACTTCAGTATTCTTTTTTCAAGTA  450

seq1  ATTAGTCATTGTCATACATTTTTGCCCATTTGATTTCTTGTAATTACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTCATTGTCATACATTTTTGCCCATTTGATTTCTTGTAATTACCAT  500

seq1  GCATGCTACATTTCAAGACATACCCTACACGCCATTAAATATTTTATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTACATTTCAAGACATACCCTACACGCCATTAAATATTTTATTAA  550

seq1  TATATTTCTCCCTAAAAGATGAATTC  576
      ||||||||||||||||||||||||||
seq2  TATATTTCTCCCTAAAAGATGAATTC  576