BAC Information

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BAC

Clone NameB6Ng01-185M16
Chromosome5 (Build37)14 (Build37)
Map Location 142,867,527 - 142,868,57423,918,365 - 23,919,249
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSdk1, LOC666727
Downstream geneFoxk1, C330006K01Rik, D930005D10Rik, Papolb, Mmd2, Wipi2, Slc29a4, Tnrc18, LOC100038954, LOC100041004, LOC100038972, LOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185M16.bB6Ng01-185M16.g
ACCGA010806GA010807
length1,069928
definitionB6Ng01-185M16.b B6Ng01-185M16.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(142,867,527 - 142,868,574)(23,918,365 - 23,919,249)
sequence
gaattctctctgggatcttctgctgttctctaatacgtgacaaagtgttc
ctgcgggggttactctgtgtctctcatacacaggggtgtgcacacacgca
gggtaggagcacactcacactctcttggtttcttctgtttgcgttaacgc
gctactcagtcctttacaggaaaaattaccttttggtctttgtgtgatgt
gacatcctagggtgtccctgaacaacctccaatcgatacaatgcctgcca
taaagttctgaaaagggcataacaacagcacagcctgacatctaccagac
aggaagaggcggaagcttggcctcggctcctcatgctttcgagggtgagt
gtgtggaatggcacactctaaagtggggtgttcaagctgggggtgcagct
cactagcaggatgtgtgtctagcatgcactgggtcctgggttccattgct
agcaacacacacacatgaatgcacacatgaaaaaaaaaccacatgtggtg
gcacatacatgtaatcctagcacccagcctgtagcaggatgattgtaaat
tccaggtcacccagggctacccagtgagtctcagtctcaaaaatctaaaa
gtgaggctgggaagatgatttcagtggctaaaacgtctgtctcacaagta
cagggaccagagtctggagcctcaggagtcacatctgtaatcaggaggtg
gcatgtcacactgcgtgactttccccaggaagtctttgaacggatcacta
agcacaccagatagggcactgacaacacaatcgaaagaaacatttcattt
caagtctacctcagtgagacaatgagttcactagggtccctctcgggagc
ctgggtaagagaaggggtctctcagaaacatgagtccttattagaatctg
ggagacttagggagctacatcgtgtaagacccaccttcaaccccttccct
gggctctcaatgtaaacctacaggttagcttaccactcaccaagagatgt
gacttcaggtcgttgggaaaaacagaaacttgtaatttttaattctgttt
taaatttacaatgtcatct
gaattcactctgtagaccaggctggtccatactaggggacttctatccac
cagcctccgggcgatatccccaacggtgtccatctttatcctccaaccaa
gaggtaagattagcagtggtcttgtgctcctagtttctgctggaggagct
ctgggaagaaaggagcataataaaaagcacaaatgcctcacatgtatcta
caggtcaatcgaagtaaccaactcaaggtgtgataaatttttctggtact
tcaggaagactataaaatgtgttgttttctgctaatataattgttatgtt
acaaccaatgcttttactctattatagctaccatgagtactgcattgagg
gatgttagagtattcttaaaacactataaagtagacactcctatacttac
tccatcaagtccaagaaaaagcaaaggaaaagccaaaataaaacaaaaaa
aatctattaaagagtttactcaaggctgtgcatctcaagataatatgaat
agaatttgaataaattttgttcaaatccaaaaattttgtgcttatccaat
aattcctactatgtatgggctaaataagaatctagagcctttagtgcttg
acaactgggatgaattttctaggaccctaaataggttagtgagttctttc
agcagagccagaaggacaagagcaggcatggctctgaatctatcccagac
agcatgcatcaagaacacccatatttttttcatttaaatattcatttcat
tcattcattcatttcattcactttacatccctgatcacaacctcccattt
ttcctccaagccccaccctcacgaatattttcctcccaatatcccctatc
cctttttccctagagaaaggaaaaagccccccccacccttgggttagcac
ccttgccctggggacatccaagtcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr5_142867527_142868574
seq2: B6Ng01-185M16.b_40_1108

seq1  GAATTCTCTCTGGGATCTTCAAGCTGTTCTCTAATAGGTAAGAAAGTGTT  50
      ||||||||||||||||||||  |||||||||||||| || | ||||||||
seq2  GAATTCTCTCTGGGATCTTC-TGCTGTTCTCTAATACGTGACAAAGTGTT  49

seq1  CCTGCAGGGGTTACTCTGTGTCTCTCATACACAGGGGTGTGCACACACAC  100
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  CCTGCGGGGGTTACTCTGTGTCTCTCATACACAGGGGTGTGCACACACGC  99

seq1  AGGGTAGGAGCACACGCACACACTCTTGGTTTCTTCTGTTTGCAGTAACG  150
      ||||||||||||||| ||||| |||||||||||||||||||||  |||||
seq2  AGGGTAGGAGCACACTCACACTCTCTTGGTTTCTTCTGTTTGCGTTAACG  149

seq1  CGCTAGTCAGTCCTTTACAGGAAAAATTACCTTTTGGTCTTTGTGTGATG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTACTCAGTCCTTTACAGGAAAAATTACCTTTTGGTCTTTGTGTGATG  199

seq1  TGACATCCTAGGGTGTCCCTGAACAGCCAGGAAGCAATACAATGCATGCC  250
      ||||||||||||||||||||||||| ||   || | ||||||||| ||||
seq2  TGACATCCTAGGGTGTCCCTGAACAACCTCCAATCGATACAATGCCTGCC  249

seq1  AGAAAGTTCTGAAAAGGGCATAACAACAGCACAGCCTGACATCTACCAGA  300
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTTCTGAAAAGGGCATAACAACAGCACAGCCTGACATCTACCAGA  299

seq1  CAGGAAGAGGCGGAAGCTTGGCCTCGGCTCCTCATGCTTTCGAGGGTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGAGGCGGAAGCTTGGCCTCGGCTCCTCATGCTTTCGAGGGTGAG  349

seq1  TGTGTGGAATGGCACACTCTAAAGTGGGGTGTTCAAGCTGGGGGTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAATGGCACACTCTAAAGTGGGGTGTTCAAGCTGGGGGTGCAGC  399

seq1  TCACTAGCAGGATGTGTGTCTAGCATGCACTGGGTTCTGGGTTCCATTGC  450
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCACTAGCAGGATGTGTGTCTAGCATGCACTGGGTCCTGGGTTCCATTGC  449

seq1  TAGCAACACACACACATGAATGCACACATGAAAAAAAAACCACATGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAACACACACACATGAATGCACACATGAAAAAAAAACCACATGTGGT  499

seq1  GGCACATACATGTAATCCTAGCACCCAGCCTGTAGCAGGATGATTGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACATACATGTAATCCTAGCACCCAGCCTGTAGCAGGATGATTGTAAA  549

seq1  TTCCAGGTCACCCAGGGCTACCCAGTGAGTCTCAGTCTCAAAAATCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGTCACCCAGGGCTACCCAGTGAGTCTCAGTCTCAAAAATCTAAA  599

seq1  AGTGAGGCTGGGAAGATGA-TTCAGTGGCT-AAACGTCTGTCTCACAAGT  648
      ||||||||||||||||||| |||||||||| |||||||||||||||||||
seq2  AGTGAGGCTGGGAAGATGATTTCAGTGGCTAAAACGTCTGTCTCACAAGT  649

seq1  ACAGGGACCAGAGTCTGGAGCCTCAGGAGTCACATCTGTAATCAGGAGGT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGACCAGAGTCTGGAGCCTCAGGAGTCACATCTGTAATCAGGAGGT  699

seq1  GGCATGTCACACTGCGTGACTTTCCCCAGGAAGTC-TTGAACGGATCACT  747
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GGCATGTCACACTGCGTGACTTTCCCCAGGAAGTCTTTGAACGGATCACT  749

seq1  AAGCACACCAGATAGGGCACTGACAACACAATCGAAAGAAACATTTCA-T  796
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AAGCACACCAGATAGGGCACTGACAACACAATCGAAAGAAACATTTCATT  799

seq1  TCAAGTCTACCTCAGTGAGACAATGAGTTCACTAGGGTCCCTCTCGGGAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCTACCTCAGTGAGACAATGAGTTCACTAGGGTCCCTCTCGGGAG  849

seq1  CCTGGGTAAGAGAAGGGGTCTCTCAGAAACATGAGTCCTTATAAGAATCT  896
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTGGGTAAGAGAAGGGGTCTCTCAGAAACATGAGTCCTTATTAGAATCT  899

seq1  GGGAGACTTAGGGAGCTACATCGTGGAAGACCCACC-TCAA-CCCATCCC  944
      ||||||||||||||||||||||||| |||||||||| |||| ||| ||||
seq2  GGGAGACTTAGGGAGCTACATCGTGTAAGACCCACCTTCAACCCCTTCCC  949

seq1  TGGGCTCTCAATGTAAA-CTACA-GTTAGCT--ACAC-CACC-AGAGA-G  987
      ||||||||||||||||| ||||| |||||||   ||| |||| ||||| |
seq2  TGGGCTCTCAATGTAAACCTACAGGTTAGCTTACCACTCACCAAGAGATG  999

seq1  TGAC-TCAGGTCGT--GGGAAAACAGAA--CTGTAATTTT--ATTCTGTT  1030
      |||| |||||||||  || |||||||||   |||||||||  ||||||||
seq2  TGACTTCAGGTCGTTGGGAAAAACAGAAACTTGTAATTTTTAATTCTGTT  1049

seq1  T--AAATTACAATGTCATCT  1048
      |  || ||||||||||||||
seq2  TTAAATTTACAATGTCATCT  1069

seq1: chr14_23918365_23919249
seq2: B6Ng01-185M16.g_94_994 (reverse)

seq1  CTGTGACTT-GATGT-CCCAGGGC-AGGGTGCT-ACCCAAGG--TGGGGG  44
      ||||||||| ||||| |||||||| |||||||| ||||||||   |||||
seq2  CTGTGACTTGGATGTCCCCAGGGCAAGGGTGCTAACCCAAGGGTGGGGGG  50

seq1  GGCTTTT--CCTTCTCTAGGG-AAAAGGGATA-GGGATATTGGGAGG-AA  89
      |||||||  | |||||||||| |||||||||| |||||||||||||| ||
seq2  GGCTTTTTCCTTTCTCTAGGGAAAAAGGGATAGGGGATATTGGGAGGAAA  100

seq1  ATATTCGTGAGGGTGGGGCTTGGAGG-AAAATGGGAGGTTGTGATCA-GG  137
      |||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  ATATTCGTGAGGGTGGGGCTTGGAGGAAAAATGGGAGGTTGTGATCAGGG  150

seq1  ATGTAAAGTGAATG-AATGAATGAATGAATG-AATGAATATTTAAATG-A  184
      |||||||||||||| |||||||||||||||| |||||||||||||||| |
seq2  ATGTAAAGTGAATGAAATGAATGAATGAATGAAATGAATATTTAAATGAA  200

seq1  AAAAATATGGGTGTTCTTGATGCATGCTGTCTGGGATAGATTCAGAGCCA  234
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGGGTGTTCTTGATGCATGCTGTCTGGGATAGATTCAGAGCCA  250

seq1  TGCCTGCTCTTGTCCTTCTGGCTCTGCTGAAAGAACTCACTAACCTATTT  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCTCTTGTCCTTCTGGCTCTGCTGAAAGAACTCACTAACCTATTT  300

seq1  AGGGTCCTAG-AAATTCATCCCAGTTGTCAAGCACTAAAGGCTCTAGATT  333
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTAGAAAATTCATCCCAGTTGTCAAGCACTAAAGGCTCTAGATT  350

seq1  CTTATTTAGCCCATACATAGTAGGAATTATTGGATAAGCACAAAATTTTT  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTAGCCCATACATAGTAGGAATTATTGGATAAGCACAAAATTTTT  400

seq1  GGATTTGAACAAAATTTATTCAAATTCTATTCATATTATCTTGAGATGCA  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTTGAACAAAATTTATTCAAATTCTATTCATATTATCTTGAGATGCA  450

seq1  CAGCCTTGAGTAAACTCTTTAATAGATTTTTTTTGTTTTATTTTGGCTTT  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGAGTAAACTCTTTAATAGATTTTTTTTGTTTTATTTTGGCTTT  500

seq1  TCCTTTGCTTTTTCTTGGACTTGATGGAGTAAGTATAGGAGTGTCTACTT  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGCTTTTTCTTGGACTTGATGGAGTAAGTATAGGAGTGTCTACTT  550

seq1  TATAGTGTTTTAAGAATACTCTAACATCCCTCAATGCAGTACTCATGGTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGTTTTAAGAATACTCTAACATCCCTCAATGCAGTACTCATGGTA  600

seq1  GCTATAATAGAGTAAAAGCATTGGTTGTAACATAACAATTATATTAGCAG  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATAATAGAGTAAAAGCATTGGTTGTAACATAACAATTATATTAGCAG  650

seq1  AAAACAACACATTTTATAGTCTTCCTGAAGTACCAGAAAAATTTATCACA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAACACATTTTATAGTCTTCCTGAAGTACCAGAAAAATTTATCACA  700

seq1  CCTTGAGTTGGTTACTTCGATTGACCTGTAGATACATGTGAGGCATTTGT  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGTTGGTTACTTCGATTGACCTGTAGATACATGTGAGGCATTTGT  750

seq1  GCTTTTTATTATGCTCCTTTCTTCCCAGAGCTCCTCCAGCAGAAACTAGG  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTATTATGCTCCTTTCTTCCCAGAGCTCCTCCAGCAGAAACTAGG  800

seq1  AGCACAAGACCACTGCTAATCTTACCTCTTGGTTGGAGGATAAAGATGGA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAGACCACTGCTAATCTTACCTCTTGGTTGGAGGATAAAGATGGA  850

seq1  CATTTGTTGGGGATATTGACCATGAACTGGTGGATAGAAGTCCCCTTGTA  883
      ||   ||||||||||| | ||     |||||||||||||||||||| |||
seq2  CA-CCGTTGGGGATATCGCCCGGAGGCTGGTGGATAGAAGTCCCCTAGTA  899

seq1  TG  885
      ||
seq2  TG  901