BAC Information

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BAC

Clone NameB6Ng01-185N16
Chromosome14 (Build37)
Map Location 66,372,474 - 66,522,856
singlet/doubletdoublet
Overlap geneScara5, Pbk, Esco2, Ccdc25
Upstream geneKif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3, Fzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600
Downstream geneScara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b, LOC100043676, Trim35, Stmn4, Adra1a, ENSMUSG00000057913, LOC668366, Dpysl2, EG432870
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N16.bB6Ng01-185N16.g
ACCGA010852GA010853
length983593
definitionB6Ng01-185N16.b B6Ng01-185N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,372,474 - 66,373,458)(66,522,245 - 66,522,856)
sequence
gaattctgcacaaagcgtactctatctcaatttgaacagaggtgacatga
agaggggccaagaagggcttggtggggccaggaaagtaaacttacaaaaa
aaaagggaagccgggtggtcccagaggagcctgtatgcactcagtaactg
gagtttatcaaagtgagctgctgtcgtccaagagatgctggggacagagg
tcttgctattagtgctcatgtgggagacctcaagtctgctccaagaactt
actgttgactgacagctcctgtaagcaggcttatagtgattctggggcat
tggcactaagttgttggaaatgatatctgtgtcttcttgaggctcttcga
gcccaagatagaagttccagttaaggggagggttcaaagtggcctggctt
gggtttggccatggtcgcctgatcgggccaggagccaacagagagaggta
gtcagccttgtgtaccagactcaaaggatcactcgctgcacggcttagtg
tgccctgcccatccagctcattcccagcatgctcctctcctcactgcctg
gggatgctgcctcagacccatggttgctgcgtttagcagggcatgacctg
ggattgctccacaacactgtgtctcgggcccagatgggtatgaaagcggg
gcaggagcactctggtttatgcttgctcatgaagacaaaccccatccatc
catgcagctctggccagcaaacctctgtttagctctcaaagctagctcaa
tgctgagcatccaggactgcccgtccaagggaaatgagttaggtacatgt
ggcccaaggttgggagcttcctagagccatctcaagcaagggccctgtgg
tctgcggagtgctagctccaggccctggaattccagagtttactgtctac
cagcttccctagtgggatgacccagttctgggagtgagaaagaacagtgc
tctatgaatggggccttcccaggaacacagcct
gaattctaggtcagagtaacagagatgaatccaagaagctcattcgtcca
aaagtacatattgaatgccccctgtatttcgtggatcctggtatttggta
actcgtctttgtgtctataattaatggcacatttggggtttgtcctctgt
aattgcttccatctacaagaggaaatgtgctgcactcatgcctggcggtg
agcggtgactaatggtgaggaagaaaagggtaaaggggccaaatggaaca
cagatgggagagcatggttttagagagaagacaggactagctgtgcctgc
atgcagtgagggcttctatggatgtttcaggaaaaaacacacgtaaatga
aaagttaccagactggtttaggaagggagatctaacccgcagctcccaca
tagaaagggactagagaggacagtccagggagcagttggggctttagggg
cttgcaatctcctgcttcttcctgggtgaaaagggctcaaatattggctt
tacaatttctttttaaaatatgtttttctactcttctgaataattatctc
acaatgttttgaaaagggaagggatgaaaggaaaagagagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_66372474_66373458
seq2: B6Ng01-185N16.b_44_1026

seq1  GAATTCTGCACAAAGCGTACTCTATCTCAATTTGAACAGAGGTGACATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCACAAAGCGTACTCTATCTCAATTTGAACAGAGGTGACATGA  50

seq1  AGAGGGGCCAAGAAGGGCTTGGTGGGGCCAGGAAAGTAAACTTACAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGCCAAGAAGGGCTTGGTGGGGCCAGGAAAGTAAACTTACAAAAA  100

seq1  AAAAGGGAAGCCGGGTGGTCCCAGAGGAGCCTGTATGCACTCAGTAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGGAAGCCGGGTGGTCCCAGAGGAGCCTGTATGCACTCAGTAACTG  150

seq1  GAGTTTATCAAAGTGAGCTGCTGTCGTCCAAGAGATGCTGGGGACAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTATCAAAGTGAGCTGCTGTCGTCCAAGAGATGCTGGGGACAGAGG  200

seq1  TCTTGCTATTAGTGCTCATGTGGGAGACCTCAAGTCTGCTCCAAGAACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTATTAGTGCTCATGTGGGAGACCTCAAGTCTGCTCCAAGAACTT  250

seq1  ACTGTTGACTGACAGCTCCTGTAAGCAGGCTTATAGTGATTCTGGGGCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTGACTGACAGCTCCTGTAAGCAGGCTTATAGTGATTCTGGGGCAT  300

seq1  TGGCACTAAGTTGTTGGAAATGATATCTGTGTCTTCTTGAGGCTCTTCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTAAGTTGTTGGAAATGATATCTGTGTCTTCTTGAGGCTCTTCGA  350

seq1  GCCCAAGATAGAAGTTCCAGTTAAGGGGAGGGTTCAAAGTGGCCTGGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGATAGAAGTTCCAGTTAAGGGGAGGGTTCAAAGTGGCCTGGCTT  400

seq1  GGGTTTGGCCATGGTCGCCTGATCGGGCCAGGAGCCAACAGAGAGAGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGGCCATGGTCGCCTGATCGGGCCAGGAGCCAACAGAGAGAGGTA  450

seq1  GTCAGCCTTGTGTACCAGACTCAAAGGATCACTCGCTGCACGGCTTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTTGTGTACCAGACTCAAAGGATCACTCGCTGCACGGCTTAGTG  500

seq1  TGCCCTGCCCATCCAGCTCATTCCCAGCATGCTCCTCTCCTCACTGCCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGCCCATCCAGCTCATTCCCAGCATGCTCCTCTCCTCACTGCCTG  550

seq1  GGGATGCTGCCTCAGACCCATGGTTGCTGCGTTTAGCAGGGCATGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGCTGCCTCAGACCCATGGTTGCTGCGTTTAGCAGGGCATGACCTG  600

seq1  GGATTGCTCCACAACACTGTGTCTCGGGCCCAGATGGGTATGAAAGCGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGCTCCACAACACTGTGTCTCGGGCCCAGATGGGTATGAAAGCGGG  650

seq1  GCAGGAGCACTCTGG-TTATGCTTGCTCATGAAGACAAACCCCATCCATC  699
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCACTCTGGTTTATGCTTGCTCATGAAGACAAACCCCATCCATC  700

seq1  CATGCAGCTCTGGCCAGCAAACCTCTGTTTAGCTCTCAAAGCTAGCTCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAGCTCTGGCCAGCAAACCTCTGTTTAGCTCTCAAAGCTAGCTCAA  750

seq1  TGCTGAGCATCCAGGACTGCCCGTCCAAGGGAAATGAGTTAGGTACATGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGCATCCAGGACTGCCCGTCCAAGGGAAATGAGTTAGGTACATGT  800

seq1  GGCCCAAGGTTGGGAGCTTCCTAGAGCCATCTCAAGCAAGGGCCCTGTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAGGTTGGGAGCTTCCTAGAGCCATCTCAAGCAAGGGCCCTGTGG  850

seq1  TCTGCGGAGTGCTAGCTCCAGGCCCTGGAAATCCAGAGTTAACTGTCTAC  899
      |||||||||||||||||||||||||||||| ||||||||| |||||||||
seq2  TCTGCGGAGTGCTAGCTCCAGGCCCTGGAATTCCAGAGTTTACTGTCTAC  900

seq1  CAGCTTCCCTAGGTGGGATGACCCAGTTCTGGGAGTGAAGAAAGAAACAG  949
      ||||||||||| ||||||||||||||||||||||||| |||||| |||||
seq2  CAGCTTCCCTA-GTGGGATGACCCAGTTCTGGGAGTG-AGAAAG-AACAG  947

seq1  TGCTCTATGAATGGGGCCTT-CCAGGAACAACAGCTT  985
      |||||||||||||||||||| |||||||| ||||| |
seq2  TGCTCTATGAATGGGGCCTTCCCAGGAAC-ACAGCCT  983

seq1: chr14_66522245_66522856
seq2: B6Ng01-185N16.g_70_662 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCCTTTCATCCCTTCCCTTT  50
                        ||||||||| ||||||||||||||||||||||
seq2  ------------------TCTCTCTCT-TTTCCTTTCATCCCTTCCCTTT  31

seq1  TCAAAACATTGTGAGATAATTATTCAGAAGAGTAGAAAAACATATTTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACATTGTGAGATAATTATTCAGAAGAGTAGAAAAACATATTTTAA  81

seq1  AAAGAAATTGTAAAGCCAATATTTGAGCCCTTTTCACCCAGGAAGAAGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAATTGTAAAGCCAATATTTGAGCCCTTTTCACCCAGGAAGAAGCA  131

seq1  GGAGATTGCAAGCCCCTAAAGCCCCAACTGCTCCCTGGACTGTCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATTGCAAGCCCCTAAAGCCCCAACTGCTCCCTGGACTGTCCTCTCT  181

seq1  AGTCCCTTTCTATGTGGGAGCTGCGGGTTAGATCTCCCTTCCTAAACCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCTTTCTATGTGGGAGCTGCGGGTTAGATCTCCCTTCCTAAACCAG  231

seq1  TCTGGTAACTTTTCATTTACGTGTGTTTTTTCCTGAAACATCCATAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTAACTTTTCATTTACGTGTGTTTTTTCCTGAAACATCCATAGAAG  281

seq1  CCCTCACTGCATGCAGGCACAGCTAGTCCTGTCTTCTCTCTAAAACCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTGCATGCAGGCACAGCTAGTCCTGTCTTCTCTCTAAAACCATG  331

seq1  CTCTCCCATCTGTGTTCCATTTGGCCCCTTTACCCTTTTCTTCCTCACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCATCTGTGTTCCATTTGGCCCCTTTACCCTTTTCTTCCTCACCA  381

seq1  TTAGTCACCGCTCACCGCCAGGCATGAGTGCAGCACATTTCCTCTTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCACCGCTCACCGCCAGGCATGAGTGCAGCACATTTCCTCTTGTAG  431

seq1  ATGGAAGCAATTACAGAGGACAAACCCCAAATGTGCCATTAATTATAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGCAATTACAGAGGACAAACCCCAAATGTGCCATTAATTATAGAC  481

seq1  ACAAAGACGAGTTACCAAATACCAGGATCCACGAAATACAGGGGGCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACGAGTTACCAAATACCAGGATCCACGAAATACAGGGGGCATTC  531

seq1  AATATGTACTTTTGGACGAATGAGCTTCTTGGATTCATCTCTGTTACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTACTTTTGGACGAATGAGCTTCTTGGATTCATCTCTGTTACTCT  581

seq1  GACCTAGAATTC  612
      ||||||||||||
seq2  GACCTAGAATTC  593