BAC Information

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BAC

Clone NameB6Ng01-185N22
Chromosome14 (Build37)
Map Location 84,149,551 - 84,280,957
singlet/doubletdoublet
Overlap geneLOC100043279, LOC100043775, LOC100043776
Upstream geneLOC100043773
Downstream geneLOC100043280, LOC100043285, Pcdh17, 9630013A20Rik, LOC629794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-185N22.bB6Ng01-185N22.g
ACCGA010864GA010865
length1,0321,122
definitionB6Ng01-185N22.b B6Ng01-185N22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,149,551 - 84,150,584)(84,279,865 - 84,280,957)
sequence
gaattcactaaaattgcttcaggtaacaagagagtaatttatcttcataa
ggtaaggtaaacctagagggagatgaataaaaattatttctaaattattt
atctttatgaaataaataacaaaacataaattcaatggtaaaattatagc
taaattgaaatacttattttctttagctataagaaatgcaaatatttaat
ttcagtgcctatgaacaattttatgaattgctcataaatttttatataac
tttgagttttcctttctattccattaatctctctttttctgaatcttgtt
tttatgaccctttttcatactaaacctggtataaacccaaaactcagaag
gttatagtctctaaggaaaccagcagttgttcaactaaatgaaattttat
aaaatttaaagtaaaatataatgaaatctttttccttttctcattttcgt
cctctacctgcccaagtcctctatctcaaattcactcaatgctcacagcc
tactattaaactgatagcctttatcatgattattagtcacatatatgtca
aacagccttcgtaacattcacgtttatagctataaagatacattctgact
atatttggtcagagccaattcttttggaatatggaatggagacacatgtg
cagagacttttaagtatgcaatgtgtaaaaactaagtgtctgagcggagc
taactatattaatcttactggtgtgccccagcacaacaggggtcaggcaa
tgtggccagaacctgtgaagggggaatgtaaatgctgaagtgtgtaggga
agctaccaaataatatgttcaaaagatgccatggtatcccctatgtgata
tctcaacagctgcggttacttttacaagaactgcacaaataaagccagtt
aaattccatcattgagggcctggtgagattggctcagcgggtagaacact
gactgctcttcccaaggtcctgagttcaaatcccagcaatcacatggtgg
atcacaccatctgtagtgagatatgacaccct

gaattcacagtaagatttaacttaatgagttataaatagtaatgtattct
gaaaaaaaattaataggacagagaaagaagagaaaagatggtgtttggag
aatgtgttttcaactttattattagctatatgacacttttttatttttac
ggtcattctacaaagtaagataagaatagttcactgattcacagtaagaa
taatgcttcaaagtgctaggtataggctacaagtgtgaaataatctcaga
taatggttacaataattgatccaatgaagacatatgggaatgtaattatg
ggcaggccaaactgtaacattgatatttacaaaataaatgtttttgacat
gttgtgctatctttattttttataagtcattggaacgaatagtgtctatg
cttataaagtgacatgcatgtcattacatttgtattaattcacatatgaa
agtatttttagaatcaactgaatttatttcaagttgattttatgttctac
cttttattatctagaataagttatgccttcaaagaatagaaattggacac
atgaattttgatagcatttctgtctctaatcccattcatgtgctctactt
cagaggcatttactgtgtacattaaatcaaaacagtaactaacaagtggc
gatggatagtgctcttaggcagaaagtagaagttacattatgaatactat
tctccaaaatgtatgtataatttacatattttcaggaagcagtaatacac
ctttgtaatttttcaaaagagtcttgagacagaattgcaagatactcatg
gaggactcagtgaaagggagaatttgtgatagacaagaaatagaatgtac
acatttttgttttcattgaaattctaacctagttaaagttcaaaataagt
gttgtcattttgttaaaaatatgtgtactgaattaaagtactttatttca
ggaagctgtttcatattatagtataaatattttcattctttctcaaacat
ttgggtcagcaatgcataaaaaacaataaaagttacttaacatttcttag
aatgccaacattgttaaggtatcctttcccatcaataatttttctctgaa
taaaggtatttcttaaatgtca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_84149551_84150584
seq2: B6Ng01-185N22.b_45_1076

seq1  GAATTCACTAAAATTGCTTCAGGTAACAAGAGAGTAATTTATCTTCATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAAAATTGCTTCAGGTAACAAGAGAGTAATTTATCTTCATAA  50

seq1  GGTAAGGTAAACCTAGAGGGAGATGAATAAAAATTATTTCTAAATTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTAAACCTAGAGGGAGATGAATAAAAATTATTTCTAAATTATTT  100

seq1  ATCTTTATGAAATAAATAACAAAACATAAATTCAATGGTAAAATTATAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTATGAAATAAATAACAAAACATAAATTCAATGGTAAAATTATAGC  150

seq1  TAAATTGAAATACTTATTTTCTTTAGCTATAAGAAATGCAAATATTTAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGAAATACTTATTTTCTTTAGCTATAAGAAATGCAAATATTTAAT  200

seq1  TTCAGTGCCTATGAACAATTTTATGAATTGCTCATAAATTTTTATATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTGCCTATGAACAATTTTATGAATTGCTCATAAATTTTTATATAAC  250

seq1  TTTGAGTTTTCCTTTCTATTCCATTAATCTCTCTTTTTCTGAATCTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTTTTCCTTTCTATTCCATTAATCTCTCTTTTTCTGAATCTTGTT  300

seq1  TTTATGACCCTTTTTCATACTAAACCTGGTATAAACCCAAAACTCAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGACCCTTTTTCATACTAAACCTGGTATAAACCCAAAACTCAGAAG  350

seq1  GTTATAGTCTCTAAGGAAACCAGCAGTTGTTCAACTAAATGAAATTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGTCTCTAAGGAAACCAGCAGTTGTTCAACTAAATGAAATTTTAT  400

seq1  AAAATTTAAAGTAAAATATAATGAAATCTTTTTCCTTTTCTCATTTTCGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAAGTAAAATATAATGAAATCTTTTTCCTTTTCTCATTTTCGT  450

seq1  CCTCTACCTGCCCAAGTCCTCTATCTCAAATTCACTCAATGCTCACAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACCTGCCCAAGTCCTCTATCTCAAATTCACTCAATGCTCACAGCC  500

seq1  TACTATTAAACTGATAGCCTTTATCATGATTATTAGTCACATATATGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAAACTGATAGCCTTTATCATGATTATTAGTCACATATATGTCA  550

seq1  AACAGCCTTCGTAACATTCACGTTTATAGCTATAAAGATACATTCTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCCTTCGTAACATTCACGTTTATAGCTATAAAGATACATTCTGACT  600

seq1  ATATTTGGTCAGAGCCAATTCTTTTGGAATATGGAATGGAGACACATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGTCAGAGCCAATTCTTTTGGAATATGGAATGGAGACACATGTG  650

seq1  CAGAGACTTTTAAGTATGCAATGTGTAAAAACTAAGTGTCTGAGCGGAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTTTTAAGTATGCAATGTGTAAAAACTAAGTGTCTGAGCGGAGC  700

seq1  TAACTATATTAATCTTACTGGTGTGCCCCAGCACAACAGGGGTCAGGCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTATATTAATCTTACTGGTGTGCCCCAGCACAACAGGGGTCAGGCAA  750

seq1  TGTGGCCAGAACCTGTGAAGGGGGAATGTAAATGCTGAAGTGTGTAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCAGAACCTGTGAAGGGGGAATGTAAATGCTGAAGTGTGTAGGGA  800

seq1  AGCTACCAAATAATATGTTCAAAAGATGCCATGGTATCCCCTATGTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCAAATAATATGTTCAAAAGATGCCATGGTATCCCCTATGTGATA  850

seq1  TCTCAACAGCTGCGGTTACTTTTACAAGAACTGCACAAAATAAAGCCAGT  900
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCAACAGCTGCGGTTACTTTTACAAGAACTGCAC-AAATAAAGCCAGT  899

seq1  TAAATTCCATCATTGAGGGCCTGGTGAGA-TGGCTCAGCGGGTAAGAACA  949
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  TAAATTCCATCATTGAGGGCCTGGTGAGATTGGCTCAGCGGGT-AGAACA  948

seq1  CTGACTGCTCTTCCCAAGGTCCTGAGTTCAAATCCCAGCAATCACATGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCTCTTCCCAAGGTCCTGAGTTCAAATCCCAGCAATCACATGGT  998

seq1  GGATCACAACCATCTGTAGTGAGATATGACACCCT  1034
      ||||||| |||||||||||||||||||||||||||
seq2  GGATCAC-ACCATCTGTAGTGAGATATGACACCCT  1032


seq1: chr14_84279865_84280957
seq2: B6Ng01-185N22.g_66_1187 (reverse)

seq1  TGACATTTA--GAATAC--TTATTCAG----AAATTAATGAT-GGAAAGG  41
      |||||||||   |||||  ||||||||    |||||| |||| |||||||
seq2  TGACATTTAAGAAATACCTTTATTCAGAGAAAAATTATTGATGGGAAAGG  50

seq1  ATA-CTTA--CATG-TGGCA-TCTA--GAATGTT-AGTAAC-TTTAT--G  80
      ||| ||||   ||| ||||| ||||   |||||| |||||| |||||   
seq2  ATACCTTAACAATGTTGGCATTCTAAGAAATGTTAAGTAACTTTTATTGT  100

seq1  TTTTTATGCA-TGCTGACCC-AATGTTTGAG-AAGAATG-AAATATTTAT  126
      |||||||||| ||||||||| |||||||||| ||||||| ||||||||||
seq2  TTTTTATGCATTGCTGACCCAAATGTTTGAGAAAGAATGAAAATATTTAT  150

seq1  ACTTATAATATG-AACAGCTTCCTGAA--TAAGTACTTTTATTCAGTACA  173
      || ||||||||| ||||||||||||||   ||||||||| ||||||||||
seq2  AC-TATAATATGAAACAGCTTCCTGAAATAAAGTACTTTAATTCAGTACA  199

seq1  CATATTTTTAACAAAATGAC-ACACTTATTTTG-ACTTTAACTAGGTTAG  221
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  CATATTTTTAACAAAATGACAACACTTATTTTGAACTTTAACTAGGTTAG  249

seq1  AATTTCAATG-AAACAAAAATGTGTACATTCTATTTCTTGTCTATCACAA  270
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAATGAAAACAAAAATGTGTACATTCTATTTCTTGTCTATCACAA  299

seq1  ATTCTCCCTTTCACTGAGTCCTCCATGAGTATCTTGCAATTCTGTCTCAA  320
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCCCTTTCACTGAGTCCTCCATGAGTATCTTGCAATTCTGTCTCAA  349

seq1  GACTCTTTTGAAAAATTACAAAGGTGTATTACTGCTTCCTGAAAATATGT  370
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTTGAAAAATTACAAAGGTGTATTACTGCTTCCTGAAAATATGT  399

seq1  AAATTATACATACATTTTGGAGAATAGTATTCATAATGTAACTTCTACTT  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATACATACATTTTGGAGAATAGTATTCATAATGTAACTTCTACTT  449

seq1  TCTGCCTAAGAGCACTATCCATCGCCACTTGTTAGTTACTGTTTTGATTT  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTAAGAGCACTATCCATCGCCACTTGTTAGTTACTGTTTTGATTT  499

seq1  AATGTACACAGTAAATGCCTCTGAAGTAGAGCACATGAATGGGATTAGAG  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACACAGTAAATGCCTCTGAAGTAGAGCACATGAATGGGATTAGAG  549

seq1  ACAGAAATGCTATCAAAATTCATGTGTCCAATTTCTATTCTTTGAAGGCA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAATGCTATCAAAATTCATGTGTCCAATTTCTATTCTTTGAAGGCA  599

seq1  TAACTTATTCTAGATAATAAAAGGTAGAACATAAAATCAACTTGAAATAA  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATTCTAGATAATAAAAGGTAGAACATAAAATCAACTTGAAATAA  649

seq1  ATTCAGTTGATTCTAAAAATACTTTCATATGTGAATTAATACAAATGTAA  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTGATTCTAAAAATACTTTCATATGTGAATTAATACAAATGTAA  699

seq1  TGACATGCATGTCACTTTATAAGCATAGACACTATTCGTTCCAATGACTT  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGCATGTCACTTTATAAGCATAGACACTATTCGTTCCAATGACTT  749

seq1  ATAAAAAATAAAGATAGCACAACATGTCAAAAACATTTATTTTGTAAATA  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAATAAAGATAGCACAACATGTCAAAAACATTTATTTTGTAAATA  799

seq1  TCAATGTTACAGTTTGGCCTGCCCATAATTACATTCCCATATGTCTTCAT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTTACAGTTTGGCCTGCCCATAATTACATTCCCATATGTCTTCAT  849

seq1  TGGATCAATTATTGTAACCATTATCTGAGATTATTTCACACTTGTAGCCT  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCAATTATTGTAACCATTATCTGAGATTATTTCACACTTGTAGCCT  899

seq1  ATACCTAGCACTTTGAAGCATTATTCTTACTGTGAATCAGTGAACTATTC  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTAGCACTTTGAAGCATTATTCTTACTGTGAATCAGTGAACTATTC  949

seq1  TTATCTTACTTTGTAGAATGACCGTAAAAATAAAAAAGTGTCATATAGCT  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTTACTTTGTAGAATGACCGTAAAAATAAAAAAGTGTCATATAGCT  999

seq1  AATAATAAAGTTGAAAACACATTCTCCAAACACCATCTTTTCTCTTCTTT  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAAGTTGAAAACACATTCTCCAAACACCATCTTTTCTCTTCTTT  1049

seq1  CTCTGTCCTATTAATTTTTTTTCAGAATACATTACTATTTATAACTCATT  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCTATTAATTTTTTTTCAGAATACATTACTATTTATAACTCATT  1099

seq1  AAGTTAAATCTTACTGTGAATTC  1093
      |||||||||||||||||||||||
seq2  AAGTTAAATCTTACTGTGAATTC  1122


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