BAC Information

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BAC

Clone NameB6Ng01-186M22
Chromosome14 (Build37)
Map Location 38,865,662 - 38,866,804
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc21, Lrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
Downstream geneNrg3, LOC100041521
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-186M22.bB6Ng01-186M22.g
ACCGA011555GA011556
length5281,127
definitionB6Ng01-186M22.b B6Ng01-186M22.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcttaagtgaatgaactatttgcaaaagtatcaagatttctgtccccaag
caaatggcaaggagctggttttgcactggtctctatagattttggaaatg
ggagagagctgcaatataaagtttagggagaatgtcccaccctgaaaatc
tgcttaatagagaaaattgatgaattgatatctaaaggggatatagataa
tgttcatatatatatatatatatatatatatatatatatgtgtgtgtgtg
tgtgtgtgtgtgtatatatatatatatatattctttttatgacatatatt
ttgtgggtgagacattctcacaaatttttatattatctctctctcttttt
cactctatatatagagatgagtgtaaagcgcgctccctgtcacgcgcgga
gagagatagatatagatacatatatatatatttatttctttagagatatt
tgtgcgcactctcgcgatcgagagtgttgtatgtgcgcgcgcatatgtgt
gagagatatatatacatacactgtctat

gaattcacaaaagcagtaaaaacttaagtgctctatgttgccctacctca
gccagcttgctaaggtgctggtttctctactcattacttccttgtttggg
cagaaaatctacgataaattcacaaagtggtaaaaccttcttcagcaaca
atcatatgctcagtggcattgagtctctaggatgtgcggtgcaggcatag
cttcctccccgtggttttgctgaggttaccatcaccctcactatagatgg
gtgcagacttcctacttggttaagacaacttcagggaataatccaggcat
tgcctgcaaactgtgatgttcaattaatagagacatgttgattaatctgt
accttttcctgcaggcactggttttctgctcttgaattaaggaaaggaaa
tatgaacaggggagttgatgtcacctttacaccagggctgacctggagag
gtttttcatcttgtcctccttattcactaactccccggcttctgttccag
cttcatagtcccctcagctctctgcaggctgtgagatcatgtgaggtcac
ttagaagcagtttcggcttcactgtctctgaatgtgtcagtattatatac
tgtgcctggcatggttctcagagctaagaacagaaaagatatagacaaga
cccatgatgttaatggaaataagagtgaaagaggctgacaggaaagatag
aaggtcagctgtgcgtttgcttagactttcactaaaatgggtattatcaa
gtttcccaagtttacccatcctcatacctcatattaattgacaaacatcg
cttaaatatcatattttcttatttcaattcattgttaaaatcttatgaat
tttgcccagaagtttgaccatttgtatagttgtaattttgttttaattta
atttatttttctttttttaattgggtatttcttcatttacatttcaaatg
ctatcccaaaagtcccccggacctctcccccaatcccctgccaccactcc
acttctttgcctggtgtccccaaaaactgagcatataagttgcagaccaa
tgggctctgtccatgatggactactatgcatctcgaatacaaatgcagct
aagagaaccggagtccaggggctactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_38865662_38866804
seq2: B6Ng01-186M22.g_66_1192 (reverse)

seq1  CAGTAACCCCCTGGAGCTCGTGTCTC-TAGCTGCATATGTATCGGAAGAT  49
      |||| | ||||||||   ||  |||| ||||||||| |||||  | ||||
seq2  CAGT-AGCCCCTGGACTCCGGTTCTCTTAGCTGCATTTGTATTCG-AGAT  48

seq1  GGCATAGTAGTCCATCATTGGGAACAGAGGCCCATTGGTCTTGCAAACTT  99
       |||||||||||||||||   | ||||| ||||||||||| |||||   |
seq2  -GCATAGTAGTCCATCAT---GGACAGA-GCCCATTGGTC-TGCAA--CT  90

seq1  TATATGCCTCAGTTTTGGGGGACACCAGGGCAAAGAAGTGGGAGTGGGTG  149
      |||||| ||||||||| |||||||||| ||||||||||| |||||||   
seq2  TATATG-CTCAGTTTTTGGGGACACCA-GGCAAAGAAGT-GGAGTGG--T  135

seq1  GGCAGGGGATTGGGGGGAGAGGGTCCGGGGGACTTTTGGGATAGCATTTG  199
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GGCAGGGGATT-GGGGGAGA-GGTCCGGGGGACTTTTGGGATAGCATTTG  183

seq1  AAATGTAAATGAAGAAAATACCCAATTAAAAAAAGAAAAATAAA-TAAAT  248
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAATGTAAATGAAG-AAATACCCAATTAAAAAAAGAAAAATAAATTAAAT  232

seq1  TAAAACAAAATTACAACTATACAAATGGTCAAACTTCTGGGCAAAATTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAAATTACAACTATACAAATGGTCAAACTTCTGGGCAAAATTCA  282

seq1  TAAGATTTTAACAATGAATTGAAATAAGAAAATATGATATTTAAGCGATG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATTTTAACAATGAATTGAAATAAGAAAATATGATATTTAAGCGATG  332

seq1  TTTGTCAATTAATATGAGGTATGAGGATGGGTAAACTTGGGAAACTTGAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAATTAATATGAGGTATGAGGATGGGTAAACTTGGGAAACTTGAT  382

seq1  AATACCCATTTTAGTGAAAGTCTAAGCAAACGCACAGCTGACCTTCTATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCATTTTAGTGAAAGTCTAAGCAAACGCACAGCTGACCTTCTATC  432

seq1  TTTCCTGTCAGCCTCTTTCACTCTTATTTCCATTAACATCATGGGTCTTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTCAGCCTCTTTCACTCTTATTTCCATTAACATCATGGGTCTTG  482

seq1  TCTATATCTTTTCTGTTCTTAGCTCTGAGAACCATGCCAGGCACAGTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCTTTTCTGTTCTTAGCTCTGAGAACCATGCCAGGCACAGTATA  532

seq1  TAATACTGACACATTCAGAGACAGTGAAGCCGAAACTGCTTCTAAGTGAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACTGACACATTCAGAGACAGTGAAGCCGAAACTGCTTCTAAGTGAC  582

seq1  CTCACATGATCTCACAGCCTGCAGAGAGCTGAGGGGACTATGAAGCTGGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATGATCTCACAGCCTGCAGAGAGCTGAGGGGACTATGAAGCTGGA  632

seq1  ACAGAAGCCGGGGAGTTAGTGAATAAGGAGGACAAGATGAAAAACCTCTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAGCCGGGGAGTTAGTGAATAAGGAGGACAAGATGAAAAACCTCTC  682

seq1  CAGGTCAGCCCTGGTGTAAAGGTGACATCAACTCCCCTGTTCATATTTCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCAGCCCTGGTGTAAAGGTGACATCAACTCCCCTGTTCATATTTCC  732

seq1  TTTCCTTAATTCAAGAGCAGAAAACCAGTGCCTGCAGGAAAAGGTACAGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTAATTCAAGAGCAGAAAACCAGTGCCTGCAGGAAAAGGTACAGA  782

seq1  TTAATCAACATGTCTCTATTAATTGAACATCACAGTTTGCAGGCAATGCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAACATGTCTCTATTAATTGAACATCACAGTTTGCAGGCAATGCC  832

seq1  TGGATTATTCCCTGAAGTTGTCTTAACCAAGTAGGAAGTCTGCACCCATC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTATTCCCTGAAGTTGTCTTAACCAAGTAGGAAGTCTGCACCCATC  882

seq1  TATAGTGAGGGTGATGGTAACCTCAGCAAAACCACGGGGAGGAAGCTATG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAGGGTGATGGTAACCTCAGCAAAACCACGGGGAGGAAGCTATG  932

seq1  CCTGCACCGCACATCCTAGAGACTCAATGCCACTGAGCATATGATTGTTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCACCGCACATCCTAGAGACTCAATGCCACTGAGCATATGATTGTTG  982

seq1  CTGAAGAAGGTTTTACCACTTTGTGAATTTATCGTAGATTTTCTGCCCAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAAGGTTTTACCACTTTGTGAATTTATCGTAGATTTTCTGCCCAA  1032

seq1  ACAAGGAAGTAATGAGTAGAGAAACCAGCACCTTAGCAAGCTGGCTGAGG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGAAGTAATGAGTAGAGAAACCAGCACCTTAGCAAGCTGGCTGAGG  1082

seq1  TAGGGCAACATAGAGCACTTAAGTTTTTACTGCTTTTGTGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGCAACATAGAGCACTTAAGTTTTTACTGCTTTTGTGAATTC  1127


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