BAC Information

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BAC

Clone NameB6Ng01-187A14
Chromosome14 (Build37)
Map Location 41,308,842 - 41,428,858
singlet/doubletdoublet
Overlap geneLOC382876
Upstream geneLOC100040439, LOC218945, LOC100040470
Downstream geneSh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729, LOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-187A14.bB6Ng01-187A14.g
ACCGA011723GA011724
length9051,158
definitionB6Ng01-187A14.b B6Ng01-187A14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,308,842 - 41,309,801)(41,427,693 - 41,428,858)
sequence
gaattcctagccccagttgtatttggtagttcaggtttgatgggttcatg
agttcagaagagtgggacttttgtgagacatcaccaccctaactaaaaga
gacaccaaaatgtcagtctatttgttaatccatctgtgtctctatctatc
tatctatctatctatctatctatctatctatctacctacctacctaccta
cctacctacctacctacctatccatccatccatccatccatccatccatc
catccatccatccatccatccatctatctatctatctatctatctatcta
tctatctatctatctatctatctatctcctatcatctcttgccttttctt
cttccttcttaatccctgatgtcttcccttttatctctgatttatttagt
cttacaaccctttctcttctcttttccttttttgccaacccatgttatta
gatacaagtccatggaatatcaaagtaaaaaattttcacttccatttccc
ttttaaagagactgagaagaatgacaaacattctagaattcatgttttaa
ccttgagaatcttgtccttcagctcctacagtgagctgactgttcttata
ctctgcatgccttatccgtatgtagacatcagtcttcatagtccttatca
taacaacatgatactaccattcaatgcagatagaatacgacagtacatgc
tgatatctccatctgtgtgtagcatgtgcacatctgcacattgtatagca
tggtgtggagtagtggaagactacactcatccataatatggagcagagtg
gacatcagctgtgtctctctgatctcacttactgagtacattagtgagat
gatatgacagtacgactcagcactgctgtacacatagagcttacatagat
actag
gaattcagctattaagtctccactggtttaaatagatatgaaacattgaa
catccatttgcttttgagccctcagtgaatagccaagaggatgttccttt
agaaaaatatatattttattctgtccattgcatctaaatggaccagcggc
aaagctgtgtttattcacatccatatgcaaatattgacttatgccttgca
ttgaagtaagcttggtacgtttggaagaaaaacataacacagataaacat
ttataagcaattcaaatattaaagagcttgaacatttctaaaggcgctca
tatatgaggttttttctttctgggttgtcattatgattctacagttattt
gcaaaatacagttactgaactctctagcttttatgtatgaaagtatgtgt
ttatttctgacagcaataaagccaatatgttaggcattcatacatccctt
gtaataatccttggggagagatatgtagcacactgctcccttttatggtg
ataccatagaaatgggacagttaatttcaaaacctgtcacaggtgtagct
agctatttctcataatcacggctgaggattgttttaaatgatgattctga
tgtttaggcatataactttacagcaaaatgtaccattttagctttcttgc
atctaacatttgttcccctaatatagcctttattaaaatgtttagaagct
ggctagtgtacatgctactacaagatcctgtctcttttcttctttcttac
attcagttatattaagatgccattttaacttgctcaaagcacagaaaaat
gccacaaactagcaaattaaagatgaaaactaaagctgtaacagatgttc
ctggggacctgttactatcctccattatcttctagcaaccgtcaggcaaa
cccttcatttcatgtcttctagcacagcatacaacacatttatgaattgt
taacgtaagtcaaaaatgcagacctgaactttacttgcaagtctagaata
gtctcttctactaaatataaaaccacagtaataaaaagaaatggcattga
ggaagattttattattgttataaggaaaacagagccagtagttgaccatg
aagctaatagtaacagaaaggattcagttaactgggaatcttacataaac
cttatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_41308842_41309801
seq2: B6Ng01-187A14.b_44_948

seq1  GAATTCCTAGCCCCAGTTGTATTTGGTAGTTCAGGTTTGATGGGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGCCCCAGTTGTATTTGGTAGTTCAGGTTTGATGGGTTCATG  50

seq1  AGTTCAGAAGAGTGGGACTTTTGTGAGACATCACCACCCTAACTAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAGAAGAGTGGGACTTTTGTGAGACATCACCACCCTAACTAAAAGA  100

seq1  GACACCAAAATGTCAGTCTATTTGTTAATCCATCTGTGTCTCTATCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCAAAATGTCAGTCTATTTGTTAATCCATCTGTGTCTCTATCTATC  150

seq1  TATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCTACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATCTATCTATCTATCTACCTACCTACCTACCTA  200

seq1  CCTACCTACCTACCTACCTATCCATCCATCCATCCATCCATCCATCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTACCTACCTACCTATCCATCCATCCATCCATCCATCCATCCATC  250

seq1  CATCCATCCATCCATCCATCCATCTATCTATCTATCTATCTATCTATCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATCCATCCATCCATCCATCTATCTATCTATCTATCTATCTATCTA  300

seq1  TCTATCTATCTATCTATCTATCTATCTCCTATCATCTCTTGCCTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTATCTATCTATCTATCTATCTCCTATCATCTCTTGCCTTTTCTT  350

seq1  CTTCCTTCTTAATCCCTGATGTCTTCCCTTTTATCTCTGATTTATTTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTCTTAATCCCTGATGTCTTCCCTTTTATCTCTGATTTATTTAGT  400

seq1  CTTACAACCCTTTCTCTTCTCTTTTCCTTTTTTGCCAACCCATGTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACCCTTTCTCTTCTCTTTTCCTTTTTTGCCAACCCATGTTATTA  450

seq1  GATACAAGTCCATGGAATATCAAAGTAAAAAATTTTCACTTCCATTTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGTCCATGGAATATCAAAGTAAAAAATTTTCACTTCCATTTCCC  500

seq1  TTTTAAAAGAGACTGAGAAGAAATGACAAACATTCTAGAAATTCATGTTT  550
      |||| ||||||||||||||| ||||||||||||||||| |||||||||||
seq2  TTTT-AAAGAGACTGAGAAG-AATGACAAACATTCTAG-AATTCATGTTT  547

seq1  TAAACCTTGAGAATCTTGTCCTTCAGCTCCCTACAGTTGAGCTGACTGTT  600
      | |||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  T-AACCTTGAGAATCTTGTCCTTCAGCT-CCTACAG-TGAGCTGACTGTT  594

seq1  CTTATACTCTGCATGCCTTATTCCCGTTATGTAGACATCAGTTCTTTCAT  650
      |||||||||||||||||||||  ||| |||||||||||||||   |||||
seq2  CTTATACTCTGCATGCCTTAT--CCG-TATGTAGACATCAGT--CTTCAT  639

seq1  AGTCCTTATCATAACAAACATGAATACTACCCATTCAATGCAGATTAGGA  700
      ||||||||||||||| |||||| |||||| |||||||||||||||   ||
seq2  AGTCCTTATCATAAC-AACATG-ATACTA-CCATTCAATGCAGAT--AGA  684

seq1  ATACGACAGTTACATGCTGATATTTTTCCATTCTGTGTGTAGCATGTGCA  750
      ||||||||| ||||||||||||  | |||| |||||||||||||||||||
seq2  ATACGACAG-TACATGCTGATA--TCTCCA-TCTGTGTGTAGCATGTGCA  730

seq1  CATCTGCACATTTGTATAAGGCATGGGGTGTGGGGAGTAGTTGGAAAGAC  800
      |||||||||| |||||||  |||||    ||| ||||||||  | |||||
seq2  CATCTGCACA-TTGTATA--GCATG----GTGTGGAGTAGT--GGAAGAC  771

seq1  TACACTCATCCATTAATATGGAGGCCAGAGTTGGACATCAGCTGTGTCTC  850
      |||||||||||| ||||||||||  ||||| |||||||||||||||||||
seq2  TACACTCATCCA-TAATATGGAG--CAGAG-TGGACATCAGCTGTGTCTC  817

seq1  TCTTGATCCCTCATTTTTTCTGAAGTAACCATTTTGGTGAGAATGGATAA  900
      || ||||| | |    || ||| ||||  ||  || ||||||   ||| |
seq2  TC-TGATCTCAC----TTACTG-AGTA--CA--TTAGTGAGA--TGAT-A  854

seq1  TGACAGTCCCGGACTCCAGCACTGCTGTTACCACCATAGAAGCTTTAACA  950
      ||||||| |  |||| ||||||||||| |||   ||||| |||||  |||
seq2  TGACAGTAC--GACT-CAGCACTGCTG-TAC--ACATAG-AGCTT--ACA  895

seq1  TAGATACTAG  960
      ||||||||||
seq2  TAGATACTAG  905

seq1: chr14_41427693_41428858
seq2: B6Ng01-187A14.g_62_1219 (reverse)

seq1  AAAATAAGTTTATTGTAAGTATTCCCAGTTAAACTGAATCCTTTCTGTTA  50
      |||||||| ||  |||||| |||||||||| |||||||||||||||||| 
seq2  AAAATAAGGTTTATGTAAG-ATTCCCAGTT-AACTGAATCCTTTCTGTT-  47

seq1  ACTTATAGCCTTCATGGTCACCTACTTGCTTCTTGTTTTTCCTATAAACA  100
      |||  ||| ||||||||||| ||||| |||   |||||| | ||| ||||
seq2  ACTATTAG-CTTCATGGTCAACTACTGGCT--CTGTTTTCCTTAT-AACA  93

seq1  ATAATAAAATCTTCCTCAATTGCCATTTC-TTTTATTACTGTGGTTTTAT  149
      ||||||||||||||||||| ||||||||| ||||||||||||||||||| 
seq2  ATAATAAAATCTTCCTCAA-TGCCATTTCTTTTTATTACTGTGGTTTTA-  141

seq1  TATTTAGTAGAAGAGACTATTCTAGACTTGCAAGTAAAGTTCAGGTCTGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTAGAAGAGACTATTCTAGACTTGCAAGTAAAGTTCAGGTCTGC  191

seq1  ATTTTTGACTTACGTTAACAATTCATAAATGTGTTGTATGCTGTGCTAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGACTTACGTTAACAATTCATAAATGTGTTGTATGCTGTGCTAGA  241

seq1  AGACATGAAATGAAGGGTTTGCCTGACGGTTGCTAGAAGATAATGGAGGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGAAATGAAGGGTTTGCCTGACGGTTGCTAGAAGATAATGGAGGA  291

seq1  TAGTAACAGGTCCCCAGGAACATCTGTTACAGCTTTAGTTTTCATCTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAGGTCCCCAGGAACATCTGTTACAGCTTTAGTTTTCATCTTTA  341

seq1  ATTTGCTAGTTTGTGGCATTTTTCTGTGCTTTGAGCAAGTTAAAATGGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTAGTTTGTGGCATTTTTCTGTGCTTTGAGCAAGTTAAAATGGCA  391

seq1  TCTTAATATAACTGAATGTAAGAAAGAAGAAAAGAGACAGGATCTTGTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATATAACTGAATGTAAGAAAGAAGAAAAGAGACAGGATCTTGTAG  441

seq1  TAGCATGTACACTAGCCAGCTTCTAAACATTTTAATAAAGGCTATATTAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGTACACTAGCCAGCTTCTAAACATTTTAATAAAGGCTATATTAG  491

seq1  GGGAACAAATGTTAGATGCAAGAAAGCTAAAATGGTACATTTTGCTGTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACAAATGTTAGATGCAAGAAAGCTAAAATGGTACATTTTGCTGTAA  541

seq1  AGTTATATGCCTAAACATCAGAATCATCATTTAAAACAATCCTCAGCCGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATATGCCTAAACATCAGAATCATCATTTAAAACAATCCTCAGCCGT  591

seq1  GATTATGAGAAATAGCTAGCTACACCTGTGACAGGTTTTGAAATTAACTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGAGAAATAGCTAGCTACACCTGTGACAGGTTTTGAAATTAACTG  641

seq1  TCCCATTTCTATGGTATCACCATAAAAGGGAGCAGTGTGCTACATATCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTTCTATGGTATCACCATAAAAGGGAGCAGTGTGCTACATATCTC  691

seq1  TCCCCAAGGATTATTACAAGGGATGTATGAATGCCTAACATATTGGCTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAAGGATTATTACAAGGGATGTATGAATGCCTAACATATTGGCTTT  741

seq1  ATTGCTGTCAGAAATAAACACATACTTTCATACATAAAAGCTAGAGAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTGTCAGAAATAAACACATACTTTCATACATAAAAGCTAGAGAGTT  791

seq1  CAGTAACTGTATTTTGCAAATAACTGTAGAATCATAATGACAACCCAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACTGTATTTTGCAAATAACTGTAGAATCATAATGACAACCCAGAA  841

seq1  AGAAAAAACCTCATATATGAGCGCCTTTAGAAATGTTCAAGCTCTTTAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAACCTCATATATGAGCGCCTTTAGAAATGTTCAAGCTCTTTAAT  891

seq1  ATTTGAATTGCTTATAAATGTTTATCTGTGTTATGTTTTTCTTCCAAACG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAATTGCTTATAAATGTTTATCTGTGTTATGTTTTTCTTCCAAACG  941

seq1  TACCAAGCTTACTTCAATGCAAGGCATAAGTCAATATTTGCATATGGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGCTTACTTCAATGCAAGGCATAAGTCAATATTTGCATATGGATG  991

seq1  TGAATAAACACAGCTTTGCCGCTGGTCCATTTAGATGCAATGGACAGAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAACACAGCTTTGCCGCTGGTCCATTTAGATGCAATGGACAGAAT  1041

seq1  AAAATATATATTTTTCTAAAGGAACATCCTCTTGGCTATTCACTGAGGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATATTTTTCTAAAGGAACATCCTCTTGGCTATTCACTGAGGGC  1091

seq1  TCAAAAGCAAATGGATGTTCAATGTTTCATATCTATTTAAACCAGTGGAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGCAAATGGATGTTCAATGTTTCATATCTATTTAAACCAGTGGAG  1141

seq1  ACTTAATAGCTGAATTC  1166
      |||||||||||||||||
seq2  ACTTAATAGCTGAATTC  1158