BAC Information

Click to search

BAC

Clone NameB6Ng01-188I18
Chromosome14 (Build37)
Map Location 122,790,011 - 122,791,148
singlet/doubletsinglet
Overlap geneClybl
Upstream geneSlc15a1, LOC100043577, Dock9, LOC668843, Phgdhl1, Gpr18, Ebi2, Timm8a2, Tm9sf2, LOC621710, 1700108J01Rik
Downstream geneEG328479, EG432907, Zic5, Zic2, ENSMUSG00000075465, LOC668847, Pcca, BC006662, 4930594M22Rik, Tmtc4, Vgcnl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-188I18.bB6Ng01-188I18.g
ACCGA012820GA012821
length1,1381,170
definitionB6Ng01-188I18.b B6Ng01-188I18.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctagcaaatttagaaacccctttagatttcaatactcagagaa
atccttaataagtagcttttgtgttgcctgatcttccttatccaagatat
tgagaacaaaggcttctctccagttgggtcattctcccagatattttcaa
ggtaactcttgttacctgcctatcttatatcagaggctttgaggacagct
ttttaaatagaaaggactgtggatctcccttatactttggtccatggaga
cctccacctgcacagactggtcacagatgaagaagatcatctccgaggtt
tacctcagctctcctcttcctttgcatcaaccttgccagcctggcgcccc
tccaaagctgtgctccagagtggttaccccacccccacccccatttcctg
tgttagtcttaccgaggataacacctttctttccttttccacatagagtg
agagctaggtcattttatgcttcctctttacaaagctaagtgtgagcact
gtcccttcatccgtctgtctctcccctttttcacattctgagaattcatt
ctgtttttatagactattctgaccatttgccatttttctgatctggatat
ttaatgagcagtttcaaagaaaaaaagagagagcagttttctctgccttt
ctaaattatcaaaaatttatttgtctttgtcagatatctagcattccaga
atctagttttcttttcatccttcctttctttaagatttatttatttttcc
acatatgggtattttgtctgtgttatgactgcatacaaaagagaggacag
ttatagacagttgtgagctgccctgtgggtgttgagagttgaacccagga
cctctggaaaagcagccagtactcttaaccactgagccatttctccagac
cttgaatctagtttctttaagagacagtcctgtttataacctgtggctgc
ttagttcagtttgtatctacctgggactcctattatcaatgctatgtctc
tcaacccattaaagccactctgaaatctaaccagttaggcttgtgtctcc
atgccatgcttctattggccatgcccggggagcagaacagctcagtgggt
taaggttcttatcttcaagtcttgacaaggctgaattc
gaattctcacccgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagagaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatggctaagataaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
cgattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccagaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacaaaaaattgtggtacatttacacaaa
ggagtactactcagctattaaaaggaatgaatttgtgaaattcctaggca
aatggttggacctggagggcatcatcctgagtgaggtaacacaatcacaa
aagaactcaaatgatatgtactcactgataagtggatattagcccagaaa
cttagtatagcgagatataaggtacaatttgcaaaacatgaaactgaaga
agaacgaagaccaaagtgtggacactttgccccttcgtagaattggaaac
aacatcaccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatta
gcctccaaacgatgacaccattgcatacactagcaagcctttgttgcaag
gaccgtgatatagctgtctcttgtgagactaggctggggcctagcaaaca
cagaagtggaagctcacagtcaacttattggaatggatcacagggccccc
aatggaggagctagaagaaagtatccaaggagctaaagagaatctgcaac
ctgtagtgcacattatgactaacagtaccccgagctcttgactcttagct
gcatatgtatcaaaaggatgctactcgcatcacttgcaaagagaggccca
attggtacagcaaccttaatgctagtacaggaacgcctgccaaattcatg
ttggttagagaaatactgcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_122790011_122791148
seq2: B6Ng01-188I18.b_44_1181

seq1  GAATTCCCTAGCAAATTTAGAAACCCCTTTAGATTTCAATACTCAGAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGCAAATTTAGAAACCCCTTTAGATTTCAATACTCAGAGAA  50

seq1  ATCCTTAATAAGTAGCTTTTGTGTTGCCTGATCTTCCTTATCCAAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTAATAAGTAGCTTTTGTGTTGCCTGATCTTCCTTATCCAAGATAT  100

seq1  TGAGAACAAAGGCTTCTCTCCAGTTGGGTCATTCTCCCAGATATTTTCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACAAAGGCTTCTCTCCAGTTGGGTCATTCTCCCAGATATTTTCAA  150

seq1  GGTAACTCTTGTTACCTGCCTATCTTATATCAGAGGCTTTGAGGACAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACTCTTGTTACCTGCCTATCTTATATCAGAGGCTTTGAGGACAGCT  200

seq1  TTTTAAATAGAAAGGACTGTGGATCTCCCTTATACTTTGGTCCATGGAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAGAAAGGACTGTGGATCTCCCTTATACTTTGGTCCATGGAGA  250

seq1  CCTCCACCTGCACAGACTGGTCACAGATGAAGAAGATCATCTCCGAGGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTGCACAGACTGGTCACAGATGAAGAAGATCATCTCCGAGGTT  300

seq1  TACCTCAGCTCTCCTCTTCCTTTGCATCAACCTTGCCAGCCTGGCGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCAGCTCTCCTCTTCCTTTGCATCAACCTTGCCAGCCTGGCGCCCC  350

seq1  TCCAAAGCTGTGCTCCAGAGTGGTTACCCCACCCCCACCCCCATTTCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGCTGTGCTCCAGAGTGGTTACCCCACCCCCACCCCCATTTCCTG  400

seq1  TGTTAGTCTTACCGAGGATAACACCTTTCTTTCCTTTTCCACATAGAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCTTACCGAGGATAACACCTTTCTTTCCTTTTCCACATAGAGTG  450

seq1  AGAGCTAGGTCATTTTATGCTTCCTCTTTACAAAGCTAAGTGTGAGCACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTAGGTCATTTTATGCTTCCTCTTTACAAAGCTAAGTGTGAGCACT  500

seq1  GTCCCTTCATCCGTCTGTCTCTCCCCTTTTTCACATTCTGAGAATTCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTTCATCCGTCTGTCTCTCCCCTTTTTCACATTCTGAGAATTCATT  550

seq1  CTGTTTTTATAGACTATTCTGACCATTTGCCATTTTTCTGATCTGGATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTTATAGACTATTCTGACCATTTGCCATTTTTCTGATCTGGATAT  600

seq1  TTAATGAGCAGTTTCAAAGAAAAAAAGAGAGAGCAGTTTTCTCTGCCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGAGCAGTTTCAAAGAAAAAAAGAGAGAGCAGTTTTCTCTGCCTTT  650

seq1  CTAAATTATCAAAAATTTATTTGTCTTTGTCAGATATCTAGCATTCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTATCAAAAATTTATTTGTCTTTGTCAGATATCTAGCATTCCAGA  700

seq1  ATCTAGTTTTCTTTTCATCCTTCCTTTCTTTAAGATTTATTTATTTTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTTTTCTTTTCATCCTTCCTTTCTTTAAGATTTATTTATTTTTCC  750

seq1  ACATATGGGTATTTTGTCTGTGTTATGACTGCATACAAAAGAGAGGACAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATGGGTATTTTGTCTGTGTTATGACTGCATACAAAAGAGAGGACAG  800

seq1  TTATAGACAGTTGTGAGCTGCCCTGTGGGTGTTGAGAGTTGAACCCAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGACAGTTGTGAGCTGCCCTGTGGGTGTTGAGAGTTGAACCCAGGA  850

seq1  CCTCTGGAAAAGCAGCCAGTACTCTTAACCACTGAGCCATTTCTCCAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGAAAAGCAGCCAGTACTCTTAACCACTGAGCCATTTCTCCAGAC  900

seq1  CTTGAATCTAGTTTCTTAAAGAGACAGTCCTGTTTATAACCTGTGGCTGC  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTTGAATCTAGTTTCTTTAAGAGACAGTCCTGTTTATAACCTGTGGCTGC  950

seq1  TTAGTTCAGTTTGTATCTACCT-GGACTCCTATTATCAATGCTAATGTCT  999
      |||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  TTAGTTCAGTTTGTATCTACCTGGGACTCCTATTATCAATGCT-ATGTCT  999

seq1  CTCAAACCATTAAAGCCACTCTGAAATCTAACCCAGTTAGGCTTGTGTTC  1049
      ||||| ||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CTCAACCCATTAAAGCCACTCTGAAATCTAA-CCAGTTAGGCTTGTG-TC  1047

seq1  TCCATTGCCATGC-TCTATTTGGCCATGCCGGGGAGGCAG-ACAGCTCAG  1097
      |||| |||||||| |||| ||||||||||| |||  |||| |||||||||
seq2  TCCA-TGCCATGCTTCTA-TTGGCCATGCCCGGGGAGCAGAACAGCTCAG  1095

seq1  TGGGTAAAGGTTCTTATCTCCAAGTC-TGACAA-GCTGAATTC  1138
      ||||| ||||||||||||| |||||| |||||| |||||||||
seq2  TGGGTTAAGGTTCTTATCTTCAAGTCTTGACAAGGCTGAATTC  1138