BAC Information

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BAC

Clone NameB6Ng01-189D07
Chromosome14 (Build37)
Map Location 85,577,332 - 85,593,022
singlet/doubletdoublet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189D07.bB6Ng01-189D07.g
ACCGA013293GA013294
length1,020679
definitionB6Ng01-189D07.b B6Ng01-189D07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,577,332 - 85,578,026)(85,592,344 - 85,593,022)
sequence
gaattctaaggatcacttttgaaaaactgctaagatttttgctgttaaga
ttctgaagtaatgtatttgttcagcatgcctcaacagaaaataatattaa
aaaccaataatttttacagtaatgataaatgatactataatacccttaag
aagacatttgagaaaacaggagataagtgaattatggttcttaggttttg
ttaataacgcgttctcacgcccggccaggaagaacacagcaaaccagaat
cttctgcggcaaagctttattgcttacatcttcaggagccagagtgcaag
agagcaagcaaggaaatggcgaaaccccatccctttttaaggagaattat
cctccacctaggacgtattactccctgattggctgcagcccatcggccca
gttgtcatcacgggaaaggcagaacacatggcgggaaaactgcccctgca
cgtgtgcagattatgtttaccacttagaacacagctgtcagggccatctt
ataatggcaaatgtgagggcggctcctcacagatcccccttttcttttaa
taagagcaataggccacccatattaatgagagtggagatagaggtcaaat
ccccagtgtgcaggtaaaggagccgtacacataacctcctcccaggctca
tcacccagaggggtcctggtctggtcccgtgttgtttttcctgggggaag
gacacttgaacactcaaccttcttgaaagatgacatgtctccctagaata
ggctcatatgtgccgcagagcctttctactgcagtgcttagccatgcaac
tctctcaggctgctgaagcacactcactctatcccgtgcaatgagactag
cctcgtggggtttaagagctgagtggccagcgacctattgcttaagcata
gataactatatatcaagggaagctccatgtttctagtcctgcaagcgcct
gggcataaccacctttgtctctcctagtttgggcctttagcttacagacc
aacccaaaagaagcaacact

gaattctcagcaccctctactttctcagagtcagccaccttccagtcaag
gttcaactttcataataaaatccttagtcttctcatggacactctgtgac
attccaaatcaatcacagcaaagcagatcagaagttcttactacagactt
ggtcctcagctaaggtattgttacaattgcaacatataatgttatttcaa
gaaagtctgaccttttgaaaacaaatgtttccaatgcaaaactttaataa
taataataataataatattattgttattattattaatttcttaacactaa
gaatctggtcaatccagtatccacatccacatattatttcccatacatat
ggatgatagtgactggttagcagctttcctgtcagaaaaaccttgttttg
cagaaagaatgtagccatttctgagttgcttctgtagtggaagaatgcta
ggttatcatattatcgtatagcctatactctttcttcttctaatcataaa
gccccagggttctttgacccctaacttatgaccatttcttatatttgaga
attatgaggtgtgagcaacagagtaatttctagtcattttaaattgaaaa
caaatgtattaaataatgagtatttttacaactctacctctatctctgta
tgtatgtatgtatgtatgtatgtatgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85577332_85578026
seq2: B6Ng01-189D07.b_45_739

seq1  GAATTCTAAGGATCACTTTTGAAAAACTGCTAAGATTTTTGCTGTTAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGGATCACTTTTGAAAAACTGCTAAGATTTTTGCTGTTAAGA  50

seq1  TTCTGAAGTAATGTATTTGTTCAGCATGCCTCAACAGAAAATAATATTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTAATGTATTTGTTCAGCATGCCTCAACAGAAAATAATATTAA  100

seq1  AAACCAATAATTTTTACAGTAATGATAAATGATACTATAATACCCTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAATAATTTTTACAGTAATGATAAATGATACTATAATACCCTTAAG  150

seq1  AAGACATTTGAGAAAACAGGAGATAAGTGAATTATGGTTCTTAGGTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACATTTGAGAAAACAGGAGATAAGTGAATTATGGTTCTTAGGTTTTG  200

seq1  TTAATAACGCGTTCTCACGCCCGGCCAGGAAGAACACAGCAAACCAGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAACGCGTTCTCACGCCCGGCCAGGAAGAACACAGCAAACCAGAAT  250

seq1  CTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCGGCAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGTGCAAG  300

seq1  AGAGCAAGCAAGGAAATGGCGAAACCCCATCCCTTTTTAAGGAGAATTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGCAAGGAAATGGCGAAACCCCATCCCTTTTTAAGGAGAATTAT  350

seq1  CCTCCACCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCTAGGACGTATTACTCCCTGATTGGCTGCAGCCCATCGGCCCA  400

seq1  GTTGTCATCACGGGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCATCACGGGAAAGGCAGAACACATGGCGGGAAAACTGCCCCTGCA  450

seq1  CGTGTGCAGATTATGTTTACCACTTAGAACACAGCTGTCAGGGCCATCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGCAGATTATGTTTACCACTTAGAACACAGCTGTCAGGGCCATCTT  500

seq1  ATAATGGCAAATGTGAGGGCGGCTCCTCACAGATCCCCCTTTTCTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGCAAATGTGAGGGCGGCTCCTCACAGATCCCCCTTTTCTTTTAA  550

seq1  TAAGAGCAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCAATAGGCCACCCATATTAATGAGAGTGGAGATAGAGGTCAAAT  600

seq1  CCCCAGTGTGCAGGTAAAGGAGCCGTACACATAACCTCCTCCCAGGCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGTGTGCAGGTAAAGGAGCCGTACACATAACCTCCTCCCAGGCTCA  650

seq1  TCACCCAGAGGGGTCCTGGTCTGGTCCCGTGTTGTTTTTCCTGGG  695
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGAGGGGTCCTGGTCTGGTCCCGTGTTGTTTTTCCTGGG  695


seq1: chr14_85592344_85593022
seq2: B6Ng01-189D07.g_65_743 (reverse)

seq1  ATACATACATACATACATACATACATACATACAGAGATAGAGGTAGAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATACATACATACATACATACATACATACAGAGATAGAGGTAGAGTT  50

seq1  GTAAAAATACTCATTATTTAATACATTTGTTTTCAATTTAAAATGACTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAATACTCATTATTTAATACATTTGTTTTCAATTTAAAATGACTAG  100

seq1  AAATTACTCTGTTGCTCACACCTCATAATTCTCAAATATAAGAAATGGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTACTCTGTTGCTCACACCTCATAATTCTCAAATATAAGAAATGGTC  150

seq1  ATAAGTTAGGGGTCAAAGAACCCTGGGGCTTTATGATTAGAAGAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTAGGGGTCAAAGAACCCTGGGGCTTTATGATTAGAAGAAGAAAG  200

seq1  AGTATAGGCTATACGATAATATGATAACCTAGCATTCTTCCACTACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGCTATACGATAATATGATAACCTAGCATTCTTCCACTACAGAA  250

seq1  GCAACTCAGAAATGGCTACATTCTTTCTGCAAAACAAGGTTTTTCTGACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTCAGAAATGGCTACATTCTTTCTGCAAAACAAGGTTTTTCTGACA  300

seq1  GGAAAGCTGCTAACCAGTCACTATCATCCATATGTATGGGAAATAATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCTGCTAACCAGTCACTATCATCCATATGTATGGGAAATAATATG  350

seq1  TGGATGTGGATACTGGATTGACCAGATTCTTAGTGTTAAGAAATTAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGTGGATACTGGATTGACCAGATTCTTAGTGTTAAGAAATTAATAA  400

seq1  TAATAACAATAATATTATTATTATTATTATTATTAAAGTTTTGCATTGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAATATTATTATTATTATTATTATTAAAGTTTTGCATTGGA  450

seq1  AACATTTGTTTTCAAAAGGTCAGACTTTCTTGAAATAACATTATATGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGTTTTCAAAAGGTCAGACTTTCTTGAAATAACATTATATGTTG  500

seq1  CAATTGTAACAATACCTTAGCTGAGGACCAAGTCTGTAGTAAGAACTTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTGTAACAATACCTTAGCTGAGGACCAAGTCTGTAGTAAGAACTTCT  550

seq1  GATCTGCTTTGCTGTGATTGATTTGGAATGTCACAGAGTGTCCATGAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCTTTGCTGTGATTGATTTGGAATGTCACAGAGTGTCCATGAGAA  600

seq1  GACTAAGGATTTTATTATGAAAGTTGAACCTTGACTGGAAGGTGGCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAGGATTTTATTATGAAAGTTGAACCTTGACTGGAAGGTGGCTGAC  650

seq1  TCTGAGAAAGTAGAGGGTGCTGAGAATTC  679
      |||||||||||||||||||||||||||||
seq2  TCTGAGAAAGTAGAGGGTGCTGAGAATTC  679


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