BAC Information

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BAC

Clone NameB6Ng01-189M10
Chromosome14 (Build37)
Map Location 110,101,550 - 110,276,740
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk1, LOC640892
Downstream geneSlitrk6, EG668772
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-189M10.bB6Ng01-189M10.g
ACCGA013707GA013708
length1,1391,023
definitionB6Ng01-189M10.b B6Ng01-189M10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,275,589 - 110,276,740)(110,101,550 - 110,102,576)
sequence
gaattctgtccatcctcccatgcgttaccagttaattgctcttaataacc
agactttctccttctcagagcacataccaagaggttgtaaagcaattaac
caaaggtcataaaaagggaacaatcctttaattataggtgctaggacaaa
agataaaacattgactgggttaatctatacaaaacttcattaataactta
gttatggttttaaacctcctgtgaacctgtggatctgtgacaggtgatgg
atgtttagccagataattactcctaatggatatgcttgtaaacatttgct
gttgtaaacttctatttcaactgatgattgatttttgtgtgtactggtaa
taaactctgttacatgtgatcatgtattgtgaaagatgtctaagtactga
ggacagagatgagacagagaagaatcttttcccttactagaattttgccc
cctttcctcacttagagaattttcccccttccttgcttaggatctttctg
cttttccccttatttagctttcacaggaaactttttacaacttagtaata
agtgctatacttacttttctatatgtcctttttctcctttgcctcttgac
aagcaggctgaaagttagaaccacaaagttcctgctgagatagaacaaag
gccacattacttaaacctcagctggttaggctacaggtgttaatcaccta
agccagcagttttctaccctcagaaagagcaagaaagtattcagggcctt
ttagaagctatcatgcaccatttcagtatagtttagagagctagaacatc
cagaggccctcagactttaaagccattcaccagagtcctattctgccccc
accacgagactctctgggccaggcacaaatagactttcaactctcaaaga
gatattttaatacactggagataatttacaggaaagatttaatcttaaat
gtaactaaccatagtctctgaattaaattttcttgaatttaaatgtaaat
tgtaagggaaaaactaattttgcttttttttttatgaagatatttgggct
tctctgaaattttctatttatataaattttctgttctgtatatcctcttc
caatagtgaataaaactttaaagttaaacaaatctatca

gaattccttcttcagggtaggtgtggtatcatgatttagactgatctctg
acaaaattccacagttgattcattcattccttaaatgatatgtttttaaa
ctcaaaaccaagtcatagcctgttctgctaactttccaaactggaattat
tatttttcttatttctaggtaaactcaccttaaatatacaacccttaatt
taaacagttaccatctgaaaccttaatataaaagaacttaaaagtttcag
ttcttggtatttgctttcctttctctccaaagtgagtgcctaatttgccc
catgtttccaaccctgtgtgccacaaaagccagcaacatttgattttact
ggattataactttgtcttacagctctgatgttaattataagattggtaat
tttaattttaaaacttgtaagatctttgttttattttacatgtcactgtc
tttctgtgtatattcacatgcaccacaagctgaggtagttagaagatggt
atcagctgctccagaaatggagttgcggatagctgtgaactaccatatgg
gcgttgggagttgaacctgagtcctctgcaaaggcaatgagttctcttaa
ctactaagccacctttcaagtcccacagaagtaggattttattatttaaa
tgtcctttgtctactatctttagtattaaaatagttagttttaaaaacct
tgattgaaattttcttaagttttgatttatttgtgtacttataagtttca
tcagtactggtaatttatcctatataagacgttgggttaaataagaacct
aatcgttttgtgattctcacaaacattctatgatacacccttagaaaagg
aacatacaccaaagttttatggtatgaaaaaatttaatccctttcaagaa
tcattagtatgtgaattagagttactcttttaacacaagtatatatataa
gccagtgtgtatataataggtaataccatatatatatatatatatatata
tatatatatatatatatatatag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_110275589_110276740
seq2: B6Ng01-189M10.b_42_1180 (reverse)

seq1  TGATAGATTTTGTTTTACCTTTTAAAGTTTTATTTCACTATTTGAAAAGA  50
      ||||||| ||||||| ||  |||||||||||| ||||||||| ||    |
seq2  TGATAGA-TTTGTTTAAC--TTTAAAGTTTTA-TTCACTATTGGA----A  42

seq1  AAGAATATACAGAAACAGAAAATTTATATAAAATAGAAATATTTTCAGAG  100
       || |||||||| |||||||||||||||| ||||||||  | ||||||||
seq2  GAGGATATACAG-AACAGAAAATTTATAT-AAATAGAA--AATTTCAGAG  88

seq1  AAG-CCAAATATCTTCATTAAAAAAAAAAGCAAAATTTAGTTTTTTCCCT  149
      ||| ||||||||||||| ||||||||||||||||| |||||||||  || 
seq2  AAGCCCAAATATCTTCA-TAAAAAAAAAAGCAAAA-TTAGTTTTT--CCC  134

seq1  TTACAATTTACATTTAAATTCAAGAAAATTT-ATTCAGAGACTATGGTTA  198
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTACAATTTACATTTAAATTCAAGAAAATTTAATTCAGAGACTATGGTTA  184

seq1  GTTACATTTAAGATTAAATCTTTCCTGTAAATTATCTCCAGTGTATTAAA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACATTTAAGATTAAATCTTTCCTGTAAATTATCTCCAGTGTATTAAA  234

seq1  ATATCTCTTTGAGAGTTGAAAGTCTATTTGTGCCTGGCCCAGAGAGTCTC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCTTTGAGAGTTGAAAGTCTATTTGTGCCTGGCCCAGAGAGTCTC  284

seq1  GTGGTGGGGGCAGAATAGGACTCTGGTGAATGGCTTTAAAGTCTGAGGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGGGGCAGAATAGGACTCTGGTGAATGGCTTTAAAGTCTGAGGGC  334

seq1  CTCTGGATGTTCTAGCTCTCT-AACTATACTGAAATGGTGCATGATAGCT  397
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CTCTGGATGTTCTAGCTCTCTAAACTATACTGAAATGGTGCATGATAGCT  384

seq1  TCTAAAAGGCCCTGAATACTTTCTTGCTCTTTCTGAGGGTAGAAAACTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAGGCCCTGAATACTTTCTTGCTCTTTCTGAGGGTAGAAAACTGC  434

seq1  TGGCTTAGGTGATTAACACCTGTAGCCTAACCAGCTGAGGTTTAAGTAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGGTGATTAACACCTGTAGCCTAACCAGCTGAGGTTTAAGTAAT  484

seq1  GTGGCCTTTGTTCTATCTCAGCAGGAACTTTGTGGTTCTAACTTTCAGCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTGTTCTATCTCAGCAGGAACTTTGTGGTTCTAACTTTCAGCC  534

seq1  TGCTTGTCAAGAGGCAAAGGAGAAAAAGGACATATAGAAAAGTAAGTATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGTCAAGAGGCAAAGGAGAAAAAGGACATATAGAAAAGTAAGTATA  584

seq1  GCACTTATTACTAAGTTGTAAAAAGTTTCCTGTGAAAGCTAAATAAGGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTATTACTAAGTTGTAAAAAGTTTCCTGTGAAAGCTAAATAAGGGG  634

seq1  AAAAGCAGAAAGATCCTAAGCAAGGAAGGGGGAAAATTCTCTAAGTGAGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCAGAAAGATCCTAAGCAAGGAAGGGGGAAAATTCTCTAAGTGAGG  684

seq1  AAAGGGGGCAAAATTCTAGTAAGGGAAAAGATTCTTCTCTGTCTCATCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGGGCAAAATTCTAGTAAGGGAAAAGATTCTTCTCTGTCTCATCTC  734

seq1  TGTCCTCAGTACTTAGACATCTTTCACAATACATGATCACATGTAACAGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTCAGTACTTAGACATCTTTCACAATACATGATCACATGTAACAGA  784

seq1  GTTTATTACCAGTACACACAAAAATCAATCATCAGTTGAAATAGAAGTTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTACCAGTACACACAAAAATCAATCATCAGTTGAAATAGAAGTTT  834

seq1  ACAACAGCAAATGTTTACAAGCATATCCATTAGGAGTAATTATCTGGCTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCAAATGTTTACAAGCATATCCATTAGGAGTAATTATCTGGCTA  884

seq1  AACATCCATCACCTGTCACAGATCCACAGGTTCACAGGAGGTTTAAAACC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATCACCTGTCACAGATCCACAGGTTCACAGGAGGTTTAAAACC  934

seq1  ATAACTAAGTTATTAATGAAGTTTTGTATAGATTAACCCAGTCAATGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAAGTTATTAATGAAGTTTTGTATAGATTAACCCAGTCAATGTTT  984

seq1  TATCTTTTGTCCTAGCACCTATAATTAAAGGATTGTTCCCTTTTTATGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTGTCCTAGCACCTATAATTAAAGGATTGTTCCCTTTTTATGAC  1034

seq1  CTTTGGTTAATTGCTTTACAACCTCTTGGTATGTGCTCTGAGAAGGAGAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGTTAATTGCTTTACAACCTCTTGGTATGTGCTCTGAGAAGGAGAA  1084

seq1  AGTCTGGTTATTAAGAGCAATTAACTGGTAACGCATGGGAGGATGGACAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTTATTAAGAGCAATTAACTGGTAACGCATGGGAGGATGGACAG  1134

seq1  AATTC  1152
      |||||
seq2  AATTC  1139


seq1: chr14_110101550_110102576
seq2: B6Ng01-189M10.g_66_1088

seq1  GAATTCCTTCTTCAGGGTAGGTGTGGTATCATGATTTAGACTGATCTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCTTCAGGGTAGGTGTGGTATCATGATTTAGACTGATCTCTG  50

seq1  ACAAAATTCCACAGTTGATTCATTCATTCCTTAAATGATATGTTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTCCACAGTTGATTCATTCATTCCTTAAATGATATGTTTTTAAA  100

seq1  CTCAAAACCAAGTCATAGCCTGTTCTGCTAACTTTCCAAACTGGAATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAACCAAGTCATAGCCTGTTCTGCTAACTTTCCAAACTGGAATTAT  150

seq1  TATTTTTCTTATTTCTAGGTAAACTCACCTTAAATATACAACCCTTAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTTATTTCTAGGTAAACTCACCTTAAATATACAACCCTTAATT  200

seq1  TAAACAGTTACCATCTGAAACCTTAATATAAAAGAACTTAAAAGTTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTTACCATCTGAAACCTTAATATAAAAGAACTTAAAAGTTTCAG  250

seq1  TTCTTGGTATTTGCTTTCCTTTCTCTCCAAAGTGAGTGCCTAATTTGCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGTATTTGCTTTCCTTTCTCTCCAAAGTGAGTGCCTAATTTGCCC  300

seq1  CATGTTTCCAACCCTGTGTGCCACAAAAGCCAGCAACATTTGATTTTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCCAACCCTGTGTGCCACAAAAGCCAGCAACATTTGATTTTACT  350

seq1  GGATTATAACTTTGTCTTACAGCTCTGATGTTAATTATAAGATTGGTAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTATAACTTTGTCTTACAGCTCTGATGTTAATTATAAGATTGGTAAT  400

seq1  TTTAATTTTAAAACTTGTAAGATCTTTGTTTTATTTTACATGTCACTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTAAAACTTGTAAGATCTTTGTTTTATTTTACATGTCACTGTC  450

seq1  TTTCTGTGTATATTCACATGCACCACAAGCTGAGGTAGTTAGAAGATGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTGTATATTCACATGCACCACAAGCTGAGGTAGTTAGAAGATGGT  500

seq1  ATCAGCTGCTCCAGAAATGGAGTTGCGGATAGCTGTGAACTACCATATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCTGCTCCAGAAATGGAGTTGCGGATAGCTGTGAACTACCATATGG  550

seq1  GCGTTGGGAGTTGAACCTGAGTCCTCTGCAAAGGCAATGAGTTCTCTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGGAGTTGAACCTGAGTCCTCTGCAAAGGCAATGAGTTCTCTTAA  600

seq1  CTACTAAGCCACCTTTCAAGTCCCACAGAAGTAGGATTTTATTATTTAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTAAGCCACCTTTCAAGTCCCACAGAAGTAGGATTTTATTATTTAAA  650

seq1  TGTCCTTTGTCTACTATCTTTAGTATTAAAATAGTTAGTTTTAAAAACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTGTCTACTATCTTTAGTATTAAAATAGTTAGTTTTAAAAACCT  700

seq1  TGATTGAAATTTTCTTAAGTTTTGATTTATTTGTGTACTTATAAGTTTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGAAATTTTCTTAAGTTTTGATTTATTTGTGTACTTATAAGTTTCA  750

seq1  TCAGTACTGGTAATTTATCCTATATAAGACGTTGGGTTAAATAAGAACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTACTGGTAATTTATCCTATATAAGACGTTGGGTTAAATAAGAACCT  800

seq1  AATCGTTTTGTGATTCTCACAAACATTCTATGATACACCCTTAGAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGTTTTGTGATTCTCACAAACATTCTATGATACACCCTTAGAAAAGG  850

seq1  AACATACACCAAAGTTTTTATGGTATGAAAAAATTTAATCCCTTTCAAGA  900
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACATACACCAAAG-TTTTATGGTATGAAAAAATTTAATCCCTTTCAAGA  899

seq1  ATCATTAGTATGTGAATTAGAGTTACTCTTTTAACACAAGTATATTAATA  950
      |||||||||||||||||||||||||||||||||||||||||||||  |||
seq2  ATCATTAGTATGTGAATTAGAGTTACTCTTTTAACACAAGTATAT--ATA  947

seq1  TAAGCCAGTGTGTATATAAATAGGTAATACCATATATATATATATATATA  1000
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TAAGCCAGTGTGTATAT-AATAGGTAATACCATATATATATATATATATA  996

seq1  TATATATATATATATATATATATATAG  1027
      |||||||||||||||||||||||||||
seq2  TATATATATATATATATATATATATAG  1023


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