BAC Information

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BAC

Clone NameB6Ng01-190H05
Chromosome14 (Build37)14 (Build37)
Map Location 42,324,171 - 42,325,30543,423,588 - 43,424,707
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC382876, Sh2d4b, Tspan14, 5730469M10Rik, Dydc2, EG622782, Dydc1, Mat1a, Sftpa1, LOC100040498, LOC666079, Mbl1, Sftpd, LOC666093, EG666099, LOC100040545, LOC676294, LOC545034, LOC100040587, EG666138, EG624191, EG666149, LOC666155, EG666156, LOC100040642, LOC100041729
Downstream geneLOC624277, LOC100041810, EG666186, LOC100041722, LOC100041841, EG666207, LOC666214, LOC632737, EG623168, LOC100041849, 1700016D02Rik, LOC100040726, LOC666228, LOC666233, LOC100041930, EG666152, EG385234, LOC100041950, LOC100041910, LOC674032, EG666239, LOC100040759, LOC100040771, EG666253, EG666264, LOC100040787, EG666280, EG666285, LOC666298, LOC100042031, EG666318, EG546249, LOC100040863
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-190H05.bB6Ng01-190H05.g
ACCGA014202GA014203
length1,1171,120
definitionB6Ng01-190H05.b B6Ng01-190H05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(42,324,171 - 42,325,305)(43,423,588 - 43,424,707)
sequence
gaattctttgcaaacttctttttttttttttgttttgaaaaggtttattt
atttttattacattttttatacaatatattttgatcatactctttcacct
ccccaacttctcctaactcttcacctccatagctatctttctctcttttt
ccaaaaaagtcgaaagcaaacaaatttgttttatgtgtatggctgtttgc
ctacatgaatacatgtgtaccaggagcttatctggtgccctcagaggcca
gaagaaggtgtcacatcttctggaactgctggaaactgagcccaggtcct
ctgcaagagcaacaagcactcttttttttttttccattttttattaggta
tttaactcatttacatttccaatgctataccaaaagtcccccatatccac
ccacccccactcccctgcccacccactccccctttttggccctggtattc
ccctgtactggggcatataaagtttgcaagtccaatgggcctctctttcc
agtgatggccgactaggccatcttttgatatatatgcagctagagtcaag
agctccggggtactggttagctcataatgttgttccacctatagggttgc
agatccctttagctccttggctactttctctagctcctccattgggagcc
ctatgatccatccattagctgactgtgagcatccacttctgtgtttgctg
ggccccggcatagtctcacaagagacagctacatctgcgtcctttcaata
aaatcttgctagtgtatgcaatggtgtcagcgtttggatgctgattatgg
ggtggatccctggctatggcagtcgctacatggtccatcctttcatctca
gctcccacaaaacttctatgatagtgaaagactgtggaaatccctaggaa
ttggagtatgaagtgagacttagtacaacgtgtataggcacagaaatcaa
atgttgaaaaagcttagaagacagatagacaaaaatatattgagtccaac
tgatgctggggagtcattaacatttcagagacatggcttctgaccatgcc
tcctgctctttccttccagtagatagagcaagagaaagtacctgaccgtc
tggagttagccttgcta
gaattctatgggcctatgttaaggagtctggggacagggacccatgaaat
cctggacatacagacagttctgggttacagggtgttcacagcagttttga
gcctgctggcctgcaaggagaccagggcaaggggttctcagaatcttaga
catgcaggcacttcaagaaatcttagaggagctgaacatggaggaggcca
gcaggctgagaactagccctgaaatcagggaatggggaattctggattag
ctcagaggtgactagcccaggagtaatgaggagccttctgttggagactt
agatggcaaggctctgtaggcaaaggctttttctccatgtaacccacagt
tggtttgatgagagagacagtccttggttctaaactgtttattgattgtt
tttcatggaaatgaaagcataacatgtcttaaggttagactagaagttaa
gtaccttctgaggaaggaatgtccaggaagggaaggttattgactgaacc
ctaccatcttctattacctcattagcagggagaaccctattctgttctaa
atgaccacaggccatgttcctatgtagagattttagtcccataaaagagg
cctggtagaaaacaggtgacacttttgccatctactatggatctgggact
tccaacccactcaaatttacgaaattctggacatggtagtctactgtccc
aggtcttagtctgagatttattgatgtgaggagacaccaggacatatgtt
tagtatgagggtctgaatgcctaccctccacactgacacactgtttctaa
caaggccacaactcctaaaagtaccacctccatattcaagccaccacact
cctctgcaatctcccaagacatttacctcactctgtcctattgttttcct
ttttttccttcacaaattatgtgttctattattttcttggaatatcctcc
tataacccaacactagtgcattaccttctatggaatactgcagtttaaat
gcacatctctagacattcatgttaccatcacataagaacacatcatgtgg
tatttgttctttttgggtcttgtttataattcactcagaaagaattatcc
atgtctcatccatactgtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_42324171_42325305
seq2: B6Ng01-190H05.b_40_1156 (reverse)

seq1  TAGCAAAGGCTAACTTCAAGACCTGTCCAAGTACCTCTCCTCCTGCTCCT  50
      |||| ||||||||| || ||||  |  || ||||   | ||| |||| ||
seq2  TAGC-AAGGCTAAC-TCCAGAC--GGTCAGGTAC--TTTCTCTTGCT-CT  43

seq1  ATCCTACTTGGAAGGAAAGGAGCAGGGAGGCCATTGTTCAGAGCCAATGT  100
      || |||| |||||||||| ||||| ||||||   || |||||  | ||| 
seq2  AT-CTAC-TGGAAGGAAA-GAGCA-GGAGGC--ATGGTCAGAAGCCATG-  86

seq1  TCTCTGAATTGTTAATTGACTCCCCAGCATCAGTTGGACTCAATATATTT  150
      |||||||| |||||| ||||||||||||||||||||||||||||||||||
seq2  TCTCTGAAATGTTAA-TGACTCCCCAGCATCAGTTGGACTCAATATATTT  135

seq1  TGTCCTATCTGTCTTCTAAGCTTTTTCAACATTTGATTTCTGTGCCTATA  200
      |   ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTATCTGTCTTCTAAGCTTTTTCAACATTTGATTTCTGTGCCTATA  185

seq1  CACGTTGTACTAAGTCTCACTTCATACTCCAATTCCTAGGGATTTCCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGTACTAAGTCTCACTTCATACTCCAATTCCTAGGGATTTCCACA  235

seq1  GTCTTTCACTATCATAGAAGTTTTGTTGGAGCTGAGATGAAAGGATGGAC  300
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTCTTTCACTATCATAGAAGTTTTGTGGGAGCTGAGATGAAAGGATGGAC  285

seq1  CATGTAGCGACTGCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGCGACTGCCATAGCCAGGGATCCACCCCATAATCAGCATCCAAA  335

seq1  CGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGACACCATTGCATACACTAGCAAGATTTTATTGAAAGGACGCAGAT  385

seq1  GTAGCTGTCTCTTGTGAGACTACGCCGGGGCCCAGCAAACACAGAAGTGG  450
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTAGCTGTCTCTTGTGAGACTATGCCGGGGCCCAGCAAACACAGAAGTGG  435

seq1  ATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAGTCAGCTAATGGATGGATCATAGGGCTCCCAATGGAGGAGC  485

seq1  TAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAAGTAGCCAAGGAGCTAAAGGGATCTGCAACCCTATAGGTGGAA  535

seq1  CAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATTATGAGCTAACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATA  585

seq1  TATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCAAAAGATGGCCTAGTCGGCCATCACTGGAAAGAGAGGCCCATTG  635

seq1  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAAACTTTATATGCCCCAGTACAGGGGAATACCAGGGCCAAAAA  685

seq1  GGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGAGTGGGTGGGCAGGGGAGTGGGGGTGGGTGGATATGGGGGACTTT  735

seq1  TGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGGTATAGCATTGGAAATGTAAATGAGTTAAATACCTAATAAAAAATGG-  784

seq1  AAAAAAAAAAAAGAGTGCTTGTTGCTCTTGCAGAGGACCTGGGCTCAGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAGAGTGCTTGTTGCTCTTGCAGAGGACCTGGGCTCAGTT  834

seq1  TCCAGCAGTTCCAGAAGATGTGACACCTTCTTCTGGCCTCTGAGGGCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGTTCCAGAAGATGTGACACCTTCTTCTGGCCTCTGAGGGCACC  884

seq1  AGATAAGCTCCTGGTACACATGTATTCATGTAGGCAAACAGCCATACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGCTCCTGGTACACATGTATTCATGTAGGCAAACAGCCATACACA  934

seq1  TAAAACAAATTTGTTTGCTTTCGACTTTTTTGGAAAAAGAGAGAAAGATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACAAATTTGTTTGCTTTCGACTTTTTTGGAAAAAGAGAGAAAGATA  984

seq1  GCTATGGAGGTGAAGAGTTAGGAGAAGTTGGGGAGGTGAAAGAGTATGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGAGGTGAAGAGTTAGGAGAAGTTGGGGAGGTGAAAGAGTATGAT  1034

seq1  CAAAATATATTGTATAAAAAATGTAATAAAAATAAATAAACCTTTTCAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATATTGTATAAAAAATGTAATAAAAATAAATAAACCTTTTCAAA  1084

seq1  ACAAAAAAAAAAAAAAAGAAGTTTGCAAAGAATTC  1135
      ||  |||||||||||||||||||||||||||||||
seq2  AC--AAAAAAAAAAAAAGAAGTTTGCAAAGAATTC  1117

seq1: chr14_43423588_43424707
seq2: B6Ng01-190H05.g_66_1185

seq1  GAATTCTATGGGCCTATGTTAAGGAGTCTGGGGACAGGGACCCATGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGGGCCTATGTTAAGGAGTCTGGGGACAGGGACCCATGAAAT  50

seq1  CCTGGACATACAGACAGTTCTGGGTTACAGGGAGTTCACAGCAGTTTTGA  100
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CCTGGACATACAGACAGTTCTGGGTTACAGGGTGTTCACAGCAGTTTTGA  100

seq1  GCCTGCTGGCCTGCAAGGAGACCAGGGCAAGGGGTTCTCAGAATCTTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCTGGCCTGCAAGGAGACCAGGGCAAGGGGTTCTCAGAATCTTAGA  150

seq1  CATGCAGGCACTTCTAGAAATCTTAGAGGAGCTGAACATGGAGGAGGCCA  200
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CATGCAGGCACTTCAAGAAATCTTAGAGGAGCTGAACATGGAGGAGGCCA  200

seq1  GCAGGCTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCTGAGAACTAGCCCTGAAATCAGGGAATGGGGAATTCTGGATTAG  250

seq1  CTCAGAAGTGACTAGCCCAGGAGTAATGAGGAGCCTTCTGTTGGAGACTT  300
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTGACTAGCCCAGGAGTAATGAGGAGCCTTCTGTTGGAGACTT  300

seq1  AGATAGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCAAGGCTCTGTAGGCAAAGGCTTTTTCTCCATGTAACCCACAGT  350

seq1  TGGTTTGATGAGAGAGACAGTCCTTGGTTCTAAACTGTTTATTGATTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTGATGAGAGAGACAGTCCTTGGTTCTAAACTGTTTATTGATTGTT  400

seq1  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGGAAATGAAAGCATAACATGTCTTAAGGTTAGACTAGAAGTTAA  450

seq1  GTACCTTCTGAGGAAGGAATGTCCAGGAAGGGAAGCTTATTGACTGAACC  500
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTACCTTCTGAGGAAGGAATGTCCAGGAAGGGAAGGTTATTGACTGAACC  500

seq1  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTGTTCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCATCTTCTATTACCTCATTAGCAGGGAGAACCCTATTCTGTTCTAA  550

seq1  ATGACCACAGGCCATGTTCCTATGTAGAGATTTTAGTCCCATAAAAGAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACAGGCCATGTTCCTATGTAGAGATTTTAGTCCCATAAAAGAGG  600

seq1  CCTGGTAGAAAACAGGTGACACTTTTGCCATCTACTGTGGATCTGGGACT  650
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CCTGGTAGAAAACAGGTGACACTTTTGCCATCTACTATGGATCTGGGACT  650

seq1  TCCAACCCACTCAAATTTACGAAATTCTGGACATGGTAGTCTACTGTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCCACTCAAATTTACGAAATTCTGGACATGGTAGTCTACTGTCCC  700

seq1  AGGTCTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTAGTCTGAGATTTATTGATGTGAGGAGACACCAGGACATATGTT  750

seq1  TAGTATGAGGGTCTGAATGCCTACCCTCCACACTGACACACTGTTTCTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAGGGTCTGAATGCCTACCCTCCACACTGACACACTGTTTCTAA  800

seq1  CAAGGCCACAACTCCTAAAAGTACCACCTCCATATTCAAGCCACCACACT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCACAACTCCTAAAAGTACCACCTCCATATTCAAGCCACCACACT  850

seq1  CCTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTATTGTTTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCAATCTCCCAAGACATTTACCTCACTCTGTCCTATTGTTTTCCT  900

seq1  TTTTTTCCTTCACAAATTATGTGTTCTATTATTTTCTTGAAATATCCTCC  950
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTTTCCTTCACAAATTATGTGTTCTATTATTTTCTTGGAATATCCTCC  950

seq1  TATAACCCAACACTAGTGCATTACCTTCTATGG-ATACTGCAGTTTAAAT  999
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATAACCCAACACTAGTGCATTACCTTCTATGGAATACTGCAGTTTAAAT  1000

seq1  GCACATCTCTAGACATTCAATGTTACCATCCACATAAG-ACACATTATGT  1048
      |||||||||||||||||| |||||||||| |||||||| |||||| ||||
seq2  GCACATCTCTAGACATTC-ATGTTACCAT-CACATAAGAACACATCATGT  1048

seq1  GGTATTTG-TCTTTTTGGGTCTTGTTTATA--TCACTCAGAAAG-ATTAT  1094
      |||||||| |||||||||||||||||||||  |||||||||||| |||||
seq2  GGTATTTGTTCTTTTTGGGTCTTGTTTATAATTCACTCAGAAAGAATTAT  1098

seq1  TCATGTCTCCATCCATTAACCTGTAA  1120
       ||||||| |||||||    ||||||
seq2  CCATGTCT-CATCCAT---ACTGTAA  1120