BAC Information

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BAC

Clone NameB6Ng01-192M11
Chromosome14 (Build37)
Map Location 94,321,528 - 94,322,673
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh9, LOC668566
Downstream geneLOC100043356, LOC100043783
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-192M11.bB6Ng01-192M11.g
ACCGA015928GA015929
length1,1351,119
definitionB6Ng01-192M11.b B6Ng01-192M11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgcctatttttagaaaatatttgaaatatggatttcttataaa
ttccatgcttcttgatactatagatgtcaagcaaatttcctctagattct
taacacataaaaagctataaatttaaaaaataatgagagtgattctgaga
taaatacatcacaaaagtatgaataagaaagaaaattcattgtttcacta
gagacaggtatttctattaatttatggaagtgtttgtcttgcttgtaaaa
ttctatttttatggaatagagagttattgctgctataagatgtaagaaaa
tggctagacaccagaggaaaatataataaggacatttgggttaagaatac
aataatatcaagtgctttcactaggaagatagacaaagttactatagctg
attttcttttttaaaaaataacaaatataaaaagaatccttatttttaaa
acacccaacaacatgaatactgtcatgcactcttttgattcctttaagct
aaattaaagccattgctgaattcactggactcttgacttcttatctaaaa
aaatcatattcatttcaactgagttttaaatagtctaatggctttgacat
agtataggaaaccgaacaaagatcaaactgttgagcaaagaggtgcacag
tatataggaagaaaagaagaagaagaaagaaaaaagaaaaaatccaaccc
atcaactcagtattcattccacctctttagagaacagaaccccaattctg
acagcttagtaacatacccagttaaacatttggtttctctgtctgtcatt
gagggtggcctggtggcacatttttagccaataaaatgcaagagaataat
atcagtcaatgcttccaagagagcaactcattctcacataaaggaacaca
gagccagatttagctgtcagcaccctttactctcccctcttccctttatc
tctgtgatgctttctgatctagcagtgaagagccatgtgcaactcagata
aagtcacatttcaagacagaggcaccatagttagatgtgctgactactgg
aaatctagaagtactgctacagttccaactctctttcttataaataaata
taattcaattttcattcttatatatgtggccaagt

gaattctaaaaacaggaaaaattgttttcccaaggaatgagaccccaacc
cccaatttggttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggtgtg
taacagttgaggaaattgaggccatgaatttgaagactacaataaagggt
acacggccaggcttagagtgaggaaaagaatgggggaattatatataatg
ttaaaaatatttttaaagataagaaaagaagaaagaaatcaatttttaga
ctgtatatctgaggaaattggtaactttcctctttctgcatctcaataag
aacacatacttcagccatcacatacacaataagtttaaacacaaaaacac
agaacaaaaatcttttggttccactcccaggactaatcttcaacccagaa
ctttactctataaggactaatccagcaactcaaagaggaagacagatttt
aagtctgttccagtgttttgggaatttttaaaattattagattcttttct
taaacaacaccgtgatcagagttcaccctccacccactcctcccagctct
ctgccccccacattcttggggtcacacttcctttccttttctatttcctt
tacagaaaagagtagacctccaagaaacaacagaaacactggacaaaaca
agattcaataagacaaagccctcacatcaacactgaacaaggcaacataa
taggaggacaagagtccccaaaacaggccagaccagtcagagaaactttt
ctagtttcatccatttaactaacaaatttcataatttcatttttctttat
agctccatttttctttatagctcaaatactcttctactgggtatatgtac
attttccggtttccattaatcagcagaaaatatatttaggttgtttccgt
ttcctaggtgtgtggggtagagcaacagtgaattatggctgaacaagtat
ctgtgaaagaggatgtcaaatggctttgggtacatccccaggatcatagg
ttaaattaacttttctgtctttgagaactctctatacatatggtgtagga
gtggtgaaaaaacagtgaatgagtctcatttctccttatacactcccctc
cttaacccttgaatgtgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94321528_94322673
seq2: B6Ng01-192M11.b_44_1178

seq1  GAATTCATGCCTATTTTTAGAAAATATTTGAAATATGGATTTCTTATAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGCCTATTTTTAGAAAATATTTGAAATATGGATTTCTTATAAA  50

seq1  TTCCATGCTTCTTGATACTATAGATGTCAAGCAAATTTCCTCTAGATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGCTTCTTGATACTATAGATGTCAAGCAAATTTCCTCTAGATTCT  100

seq1  TAACACATAAAAAGCTATAAATTTAAAAAATAATGAGAGTGATTCTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATAAAAAGCTATAAATTTAAAAAATAATGAGAGTGATTCTGAGA  150

seq1  TAAATACATCACAAAAGTATGAATAAGAAAGAAAATTCATTGTTTCACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACATCACAAAAGTATGAATAAGAAAGAAAATTCATTGTTTCACTA  200

seq1  GAGACAGGTATTTCTATTAATTTATGGAAGTGTTTGTCTTGCTTGTAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGTATTTCTATTAATTTATGGAAGTGTTTGTCTTGCTTGTAAAA  250

seq1  TTCTATTTTTATGGAATAGAGAGTTATTGCTGCTATAAGATGTAAGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTATGGAATAGAGAGTTATTGCTGCTATAAGATGTAAGAAAA  300

seq1  TGGCTAGACACCAGAGGAAAATATAATAAGGACATTTGGGTTAAGAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAGACACCAGAGGAAAATATAATAAGGACATTTGGGTTAAGAATAC  350

seq1  AATAATATCAAGTGCTTTCACTAGGAAGATAGACAAAGTTACTATAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATCAAGTGCTTTCACTAGGAAGATAGACAAAGTTACTATAGCTG  400

seq1  ATTTTCTTTTTTAAAAAATAACAAATATAAAAAGAATCCTTATTTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTTTTAAAAAATAACAAATATAAAAAGAATCCTTATTTTTAAA  450

seq1  ACACCCAACAACATGAATACTGTCATGCACTCTTTTGATTCCTTTAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAACAACATGAATACTGTCATGCACTCTTTTGATTCCTTTAAGCT  500

seq1  AAATTAAAGCCATTGCTGAATTCACTGGACTCTTGACTTCTTATCTAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAGCCATTGCTGAATTCACTGGACTCTTGACTTCTTATCTAAAA  550

seq1  AAATCATATTCATTTCAACTGAGTTTTAAATAGTCTAATGGCTTTGACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATATTCATTTCAACTGAGTTTTAAATAGTCTAATGGCTTTGACAT  600

seq1  AGTATAGGAAACCGAACAAAGATCAAACTGTTGAGCAAAGAGGTGCACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAGGAAACCGAACAAAGATCAAACTGTTGAGCAAAGAGGTGCACAG  650

seq1  TATATAGGAAGAAAAGAAGAAGAAGAAAGAAAAAAGAAAAAATCCAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGGAAGAAAAGAAGAAGAAGAAAGAAAAAAGAAAAAATCCAACCC  700

seq1  ATCAACTCAGTATTCATTCCACCTCTTTAGAGAACAGAACCCCAATTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCAGTATTCATTCCACCTCTTTAGAGAACAGAACCCCAATTCTG  750

seq1  ACAGCTTAGTAACATACCCAGTTAAACATTTGGTTTCTCTGTCTGTCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTTAGTAACATACCCAGTTAAACATTTGGTTTCTCTGTCTGTCATT  800

seq1  GAGGGTGGCCTGGTGGCACATTTTTAGCCAATAAAATGCAAGAGAATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGGCCTGGTGGCACATTTTTAGCCAATAAAATGCAAGAGAATAAT  850

seq1  ATCAGTCAATGCTTCCAAGAGAGCAACTCATTCTCACATAAAGGAACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCAATGCTTCCAAGAGAGCAACTCATTCTCACATAAAGGAACACA  900

seq1  GAGCCAGATTTAGCTGTCAGCACCCTTTACTCTCCCCTCTTCCCTTTATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGATTTAGCTGTCAGCACCCTTTACTCTCCCCTCTTCCCTTTATC  950

seq1  TTCTGTGATGCTTTTCTGATTCTTAGCAGTGAAGGAGCCATGTTGCAACT  1000
       |||||||||| ||||||||   |||||||||| |||||||| |||||||
seq2  -TCTGTGATGC-TTTCTGAT--CTAGCAGTGAA-GAGCCATG-TGCAACT  994

seq1  CAGGATAAAAGTCACATTTCAAAGACAAGAGGCACCATAGTTAGATGGTT  1050
      || ||| ||||||||||||| ||||| ||||||||||||||||||||  |
seq2  CA-GAT-AAAGTCACATTTC-AAGAC-AGAGGCACCATAGTTAGATG--T  1038

seq1  GCTGGACTACTGGGAAATCTTAGAGTTACTGCTACAGTCCCAA-ACTCTT  1099
      ||| ||||||| ||||||| ||||  |||||||||||| ||||  |||||
seq2  GCT-GACTACT-GGAAATC-TAGAAGTACTGCTACAGTTCCAACTCTCTT  1085

seq1  TC-TATAAATAAAATAATAAATC-ATTTTCA-TCTTATAT-TGT-GCCAA  1144
      || ||||||||||   |||| || ||||||| |||||||| ||| |||||
seq2  TCTTATAAATAAA--TATAATTCAATTTTCATTCTTATATATGTGGCCAA  1133

seq1  GT  1146
      ||
seq2  GT  1135


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