BAC Information

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BAC

Clone NameB6Ng01-193N13
Chromosome14 (Build37)1 (Build37)
Map Location 94,065,405 - 94,066,53243,273,837 - 43,274,401
singlet/doubletsingletsinglet
Overlap genePcdh9
Upstream geneLOC668566
Downstream geneLOC100043356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-193N13.bB6Ng01-193N13.g
ACCGA016700GA016701
length1,129931
definitionB6Ng01-193N13.b B6Ng01-193N13.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(94,065,405 - 94,066,532)(43,273,837 - 43,274,401)
sequence
gaattctcattcaaagctattttaacatactttaattcttagatatttct
ataagaagttatgtgggaagtaactttttctgctgaaagaaatgtatact
acatgataaatttgtaaatttttcataaaatttattgatgaataaaattt
tatgctctctgcaatatcacaacacataatattcacacagtggccatttt
actgaggaattaatacctgtatgttttccaggtcttttaatttaatggca
aactatgcttaggaatttatctttttataaaatgtattttctgtttgaaa
tcacacaattgttctattaatttgatttctgtattttaaaagtacataaa
gttttatataccttaaaattttattacttattatttattaaagttattaa
tataaacatattgttttatcctattaagaaatattatggtcttacattat
ataataaaatagtatccataaatatcatgtagataatattaatatgacag
atgatgaaaattatataaacactgtacttcaaacacgatgtatttttaga
gtgaattatgttaatttctcttgcagaactgaaacttttaaaatacattt
taaaaatctctctttcggttaaacttttcttttcttctagcttattgatt
ttgaaatgatggtccaggcacaggcgcaggaagttgtgcaagaagtcacc
agggatagctaaaaatacttattccttcatcccatcaataaaatctttag
tggttgaaatttgggaatcagtatttttaataagttccccaggtaattgt
gatcacttctaacaggattcagaaccaatgacctggattactttgactgc
atgtctcttatggtttatatgttttacgcccctccatcttccatcccaca
cagcccaaataaagcccatcacattagggcttgaactaatgccattctta
tgctatgccccatgggatccaattttaatcactgctcttttaacattgac
tacctacaggctttaacagatgtgtaccccttacacattgtctagaagat
actcgtatgatagacaggactaaacacctgaggagtagctgctttatttc
agtagaattgctaaatcgtacacatttgt
gaattcataacacaaatgagaaagagcagtataatatgctgcaattgaag
aaatgcgtttgtataatagtttttatttcttggtatctgtgctagggatt
ttataaaaggatggaccgctttcttatttcatgttgcctacacaagcatg
taggcaagctgtgtgagtttctgagcttgaactttctcatttttcacatt
agttgtaatgattaccacacctatcccacatactatttgtttgaagtgta
aaatatgtatatgtaaacacacatacttacatatatttagtttttcttgt
ttattttgacatatatttttgttttattttggttttggttggttggttgg
ttgttttgtttatataaattgcttaacattaaatatatttgcctcctcaa
ctcttatttactgtaaaaaatttcaaaattattttgatatatattctata
aattcacaagatttactttctcctttttccaaatcacttatttacatcag
taaaagatgacaaggaaaaagtcaccttaaacgtgtattcttgttggggc
aaaaataaagcagagagctttaattatggaagcaaaaattaatcttctat
tgtgagatgcactgtttaaaacctctaagctgggactgagcaatggctat
gtgagtgtgaagacctgggttgagttccaatccccagcacccatgtaaaa
gctgggccagtgttgttgttttatgaggctgagggagaatcccaggagaa
cccccagcaattcatgggccagctagagagatgtatatggctatgaacaa
ggcagaccctgatcttcaacagagtagagttgtgagagccaaaaccaagg
ttgtcctctaacttccttgtgtactccatgcacacatacacctgcatatc
cctctctctctctctctctctctctctctct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_94065405_94066532
seq2: B6Ng01-193N13.b_46_1174 (reverse)

seq1  ACAAATGTGTAAAGATTTTAGCAATTTCTAATTGAAATAAAGCAGCTTAC  50
      |||||||||| | || |||||||| |||| | |||||||||||||| |||
seq2  ACAAATGTGT-ACGA-TTTAGCAA-TTCT-ACTGAAATAAAGCAGC-TAC  45

seq1  TTCTCAGGTGTTTAGTCCTGTCCTAT-ATA-GAGTATCTT-TAGACAATG  97
      | ||||||||||||||||||| |||| ||| ||||||||| |||||||||
seq2  TCCTCAGGTGTTTAGTCCTGT-CTATCATACGAGTATCTTCTAGACAATG  94

seq1  TGTAAGGGGAACACATCTGTAAAACCCTG-AGGTAGTCAATGTTAAAAGA  146
      ||||||||| |||||||||| ||| |||| ||||||||||||||||||||
seq2  TGTAAGGGGTACACATCTGTTAAAGCCTGTAGGTAGTCAATGTTAAAAGA  144

seq1  GCAG-GATTAAAATTGGATCCCATGGGGCATAGCATAAGAATGGCATTAG  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGATTAAAATTGGATCCCATGGGGCATAGCATAAGAATGGCATTAG  194

seq1  TTCAAGCCCTAATGTGATGGGCTTTATTT-GGCTGTGTGGGATGGAAGAT  244
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTCAAGCCCTAATGTGATGGGCTTTATTTGGGCTGTGTGGGATGGAAGAT  244

seq1  GGAGGGGCGTAAAACATATAAACCATAAGAGACATGCAGTC-AAGTAATC  293
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGAGGGGCGTAAAACATATAAACCATAAGAGACATGCAGTCAAAGTAATC  294

seq1  CAGGTCATTGGTTCTGAATCCTGTTAGAAGTGATCACAATTACCTGGGGA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCATTGGTTCTGAATCCTGTTAGAAGTGATCACAATTACCTGGGGA  344

seq1  ACTTATTAAAAATACTGATTCCCAAATTTCAACCACTAAAGATTTTATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTAAAAATACTGATTCCCAAATTTCAACCACTAAAGATTTTATTG  394

seq1  ATGGGATGAAGGAATAAGTATTTTTAGCTATCCCTGGTGACTTCTTGCAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATGAAGGAATAAGTATTTTTAGCTATCCCTGGTGACTTCTTGCAC  444

seq1  AACTTCCTGCGCCTGTGCCTGGACCATCATTTCAAAATCAATAAGCTAGA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCTGCGCCTGTGCCTGGACCATCATTTCAAAATCAATAAGCTAGA  494

seq1  AGAAAAGAAAAGTTTAACCGAAAGAGAGATTTTTAAAATGTATTTTAAAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGTTTAACCGAAAGAGAGATTTTTAAAATGTATTTTAAAA  544

seq1  GTTTCAGTTCTGCAAGAGAAATTAACATAATTCACTCTAAAAATACATCG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGTTCTGCAAGAGAAATTAACATAATTCACTCTAAAAATACATCG  594

seq1  TGTTTGAAGTACAGTGTTTATATAATTTTCATCATCTGTCATATTAATAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAGTACAGTGTTTATATAATTTTCATCATCTGTCATATTAATAT  644

seq1  TATCTACATGATATTTATGGATACTATTTTATTATATAATGTAAGACCAT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTACATGATATTTATGGATACTATTTTATTATATAATGTAAGACCAT  694

seq1  AATATTTCTTAATAGGATAAAACAATATGTTTATATTAATAACTTTAATA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTAATAGGATAAAACAATATGTTTATATTAATAACTTTAATA  744

seq1  AATAATAAGTAATAAAATTTTAAGGTATATAAAACTTTATGTACTTTTAA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAAGTAATAAAATTTTAAGGTATATAAAACTTTATGTACTTTTAA  794

seq1  AATACAGAAATCAAATTAATAGAACAATTGTGTGATTTCAAACAGAAAAT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACAGAAATCAAATTAATAGAACAATTGTGTGATTTCAAACAGAAAAT  844

seq1  ACATTTTATAAAAAGATAAATTCCTAAGCATAGTTTGCCATTAAATTAAA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTATAAAAAGATAAATTCCTAAGCATAGTTTGCCATTAAATTAAA  894

seq1  AGACCTGGAAAACATACAGGTATTAATTCCTCAGTAAAATGGCCACTGTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGGAAAACATACAGGTATTAATTCCTCAGTAAAATGGCCACTGTG  944

seq1  TGAATATTATGTGTTGTGATATTGCAGAGAGCATAAAATTTTATTCATCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTATGTGTTGTGATATTGCAGAGAGCATAAAATTTTATTCATCA  994

seq1  ATAAATTTTATGAAAAATTTACAAATTTATCATGTAGTATACATTTCTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATTTTATGAAAAATTTACAAATTTATCATGTAGTATACATTTCTTT  1044

seq1  CAGCAGAAAAAGTTACTTCCCACATAACTTCTTATAGAAATATCTAAGAA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAAAAGTTACTTCCCACATAACTTCTTATAGAAATATCTAAGAA  1094

seq1  TTAAAGTATGTTAAAATAGCTTTGAATGAGAATTC  1128
      |||||||||||||||||||||||||||||||||||
seq2  TTAAAGTATGTTAAAATAGCTTTGAATGAGAATTC  1129

seq1: chr1_43273837_43274401
seq2: B6Ng01-193N13.g_425_993

seq1  TATAAATTGCTTAACATTAAATATATTTGCCTCCTCAACTCTTATTTACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATTGCTTAACATTAAATATATTTGCCTCCTCAACTCTTATTTACT  50

seq1  GTAAAAAATTTCAAAATTATTTTGATATATATTCTATAAATTCACAAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAAATTTCAAAATTATTTTGATATATATTCTATAAATTCACAAGAT  100

seq1  TTACTTTCTCCTTTTTCCAAATCACTTATTTACATCAGTAAAAGATGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTCTCCTTTTTCCAAATCACTTATTTACATCAGTAAAAGATGACA  150

seq1  AGGAAAAAGTCACCTTAAACGTGTATTCTTGTTGGGGCAAAAATAAAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAGTCACCTTAAACGTGTATTCTTGTTGGGGCAAAAATAAAGCA  200

seq1  GAGAGCTTTAATTATGGAAGCAAAAATTAATCTTCTATTGTGAGATGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCTTTAATTATGGAAGCAAAAATTAATCTTCTATTGTGAGATGCAC  250

seq1  TGTTTAAAACCTCTAAGCTGGGACTGAGCAATGGCTATGTGAGTGTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAACCTCTAAGCTGGGACTGAGCAATGGCTATGTGAGTGTGAAG  300

seq1  ACCTGGGTTGAGTTCCAATCCCCAGCACCCATGT-AAAGCTGGGCCAGTG  349
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  ACCTGGGTTGAGTTCCAATCCCCAGCACCCATGTAAAAGCTGGGCCAGTG  350

seq1  TTGTTGTTTTATGAGGCTGA-GGAGAATCCCAGGAGAACCCCCAGCAATT  398
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTGTTGTTTTATGAGGCTGAGGGAGAATCCCAGGAGAACCCCCAGCAATT  400

seq1  CATGGGCCAGCTAGAGAGATGTATATGGCTATGAACAAGGCAGACCCTGA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGCCAGCTAGAGAGATGTATATGGCTATGAACAAGGCAGACCCTGA  450

seq1  TCTTCAACAGAGTAGAG-TGTGAGAGCCAAAACCAAGGTTGTCCTCTAAC  497
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TCTTCAACAGAGTAGAGTTGTGAGAGCCAAAACCAAGGTTGTCCTCTAAC  500

seq1  TTCCTTGTGTACTCCATGCACACATACACCTGCATAT-TCTCTCTCTCTC  546
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  TTCCTTGTGTACTCCATGCACACATACACCTGCATATCCCTCTCTCTCTC  550

seq1  TCTCTCTCTCTCTCTCTCT  565
      |||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCT  569