BAC Information

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BAC

Clone NameB6Ng01-194I24
Chromosome14 (Build37)
Map Location 99,614,261 - 99,794,285
singlet/doubletdoublet
Overlap geneD14Ertd581e, LOC100043395, LOC100043397, Klf5, LOC100043400, LOC100043789
Upstream geneLOC635593, LOC619716, LOC100043787, 2410129H14Rik, 6720463M24Rik, Dis3
Downstream geneLOC668671, LOC668672, EG546623, Klf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194I24.bB6Ng01-194I24.g
ACCGA017222GA017223
length1,0521,035
definitionB6Ng01-194I24.b B6Ng01-194I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,793,255 - 99,794,285)(99,614,261 - 99,615,047)
sequence
gaattctttgtcttcaggtttaagattggaagagaaaaggtaaaaacatg
tgaatgaagtcttatttccaataccagcaagactgtggctccttttgaat
ggagtaggtgaaagccttgttagttggatcaagagcaaagatgcttgctg
ctaagccagaggacctgagttcaatccccatgacccacatgatgatggaa
aaagagaatcctctctgatttccacgtgtgtgcagtggcaagtacacaca
cacagacacacacacatacacacacacacacaatgtaattaaaagaaaaa
aaggcacatttttttaaatataaagagtaggttatgaggatgaataatgg
gtgtttctgtaaatgggaagcagtcagctctgacattaacaaaagtgatg
agtcacctttgcgcagcatcagaaagaagccagaggagcattcagacatt
ttctacctaggtaagaacagcagctctttggcttgactgtgtccacggag
aacatcaaagtattctgcacccttaacttctcactgaaaatgcaaactaa
atccaagcaggtacccctagttgcctgtcattatgacataacacttaggg
gagcagggatagaaaaggtgacttcagacacaagctatcctaatagtcaa
atgtcactcaactagaattctacatcagctaattccttcttgtttgagtt
agacaagtcatgggctttggccatgccaaggtcttgttgtttcaccgaaa
cccatcaagggttaaatgggatgtctgtgaagaataacaacaggcacggt
gtgtgaatggtgtgtgaatggtgcccagaaaatgagaggagaagcagcca
ctccccctcatgtgcacttgctctgccttttcaacgtgcatgccctcctg
tcctttggaataacatgtgcttcaggttctctcagaaacccagttccctt
ttgagcttgctccatctcatggtccaccttggctttcccttttcctggtt
tcatctcgtcttcattcttggggagcggagggatgccttttaaaattgat
gt
gaattcttggtttagttctatatcccattttttgattgggttggtttttt
tggtgattagctccttgagttctttatatattttggatattagtcctctc
tcagatgtggggtaagtgaagatttttttcccaatctgtaggttgctgat
ttgtcttattgactatgtcctttgccttacagaagctttccagtttcagg
aggtcccatttatcaattcttgatctgagagcatgagcctcatggagttc
tgtctaggaaatttcccccctgtgccaatgagttcaaggcgttttcccac
tttctcttctaattttcccactttctcttctaattttcccactttctctt
ctattagattcaatgtatctggttttatgttgaggtccttgatccacttg
gacttgagttttgtacaaggtaaaaaataagggtctatcttcattcttct
acatagagacagccagttagaccagcaccatttactggagatgctttctg
tttcccattgtatatctttggtgtctttgtcaaagaccaagtgaccagaa
gtgtctggttttatttctgggtcttcgattctattccatcgatcaacctg
tctgtctctgcaccagcaccatgcagtttttattgctctgtagtaaagct
tgaggtcagggatggggattctcccagctcttctttttattcttaagaat
tgtttttgatcttctgggtttttggctttccagatgaatcctaagcatgt
agttattttagggaaactgaggacgaaactaaagatgaaactttttgtca
gagtgttatatatttattacagattttataatacttttcatttctacctt
tataatcttggagaatggatatgtaaaaaccctagagcaaaatgcctcct
acacttttgcccttggaataatttttaagtactatattgctaagaatcag
agtaacttggaaaatgtttaataattggttaatttaattaaaatgttcca
ttaatctggttagaaaagatttccgtagaataaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_99793255_99794285
seq2: B6Ng01-194I24.b_47_1098 (reverse)

seq1  ACATCA--TTTTAAATGCATCC--TCGCT-CCCAAG-ATG-AGACGAGAT  43
      ||||||  ||| ||| ||||||   |||| |||||| ||| |||||||||
seq2  ACATCAATTTTAAAAGGCATCCCTCCGCTCCCCAAGAATGAAGACGAGAT  50

seq1  G-AACCAGGAAA--GGGAAGCCAAGGT-GACCATGAGATGGAGCAAGCTC  89
      | ||||||||||  || |||||||||| ||||||||||||||||||||||
seq2  GAAACCAGGAAAAGGGAAAGCCAAGGTGGACCATGAGATGGAGCAAGCTC  100

seq1  AAA--GGGACTGGGTTTCTG-GAGAACCTG-AGCACATGTTA-TCCAAA-  133
      |||  || |||||||||||| ||||||||| ||||||||||| |||||| 
seq2  AAAAGGGAACTGGGTTTCTGAGAGAACCTGAAGCACATGTTATTCCAAAG  150

seq1  GACAGGA-GGCATGCACGTTG-AAAGGCAGAGCAAGTGCACATGA-GGGG  180
      ||||||| ||||||||||||| ||||||||||||||||||||||| ||||
seq2  GACAGGAGGGCATGCACGTTGAAAAGGCAGAGCAAGTGCACATGAGGGGG  200

seq1  AGTGGCTGC-TCTCCTCTCATTTTCTGGGCACCATTCACACACCATTCAC  229
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCTGCTTCTCCTCTCATTTTCTGGGCACCATTCACACACCATTCAC  250

seq1  ACACCGTGCCTGTTGTTATTCTTCACAGACATCCCATTTAACCCTTGATG  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCGTGCCTGTTGTTATTCTTCACAGACATCCCATTTAACCCTTGATG  300

seq1  GGTTTCGGTGAAACAACAAGACCTTGGCATGGCCAAAGCCCATGACTTGT  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCGGTGAAACAACAAGACCTTGGCATGGCCAAAGCCCATGACTTGT  350

seq1  CTAACTCAAACAAGAAGGAATTAGCTGATGTAGAATTCTAGTTGAGTGAC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCAAACAAGAAGGAATTAGCTGATGTAGAATTCTAGTTGAGTGAC  400

seq1  ATTTGACTATTAGGATAGCTTGTGTCTGAAGTCACCTTTTCTATCCCTGC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGACTATTAGGATAGCTTGTGTCTGAAGTCACCTTTTCTATCCCTGC  450

seq1  TCCCCTAAGTGTTATGTCATAATGACAGGCAACTAGGGGTACCTGCTTGG  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTAAGTGTTATGTCATAATGACAGGCAACTAGGGGTACCTGCTTGG  500

seq1  ATTTAGTTTGCATTTTCAGTGAGAAGTTAAGGGTGCAGAATACTTTGATG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTGCATTTTCAGTGAGAAGTTAAGGGTGCAGAATACTTTGATG  550

seq1  TTCTCCGTGGACACAGTCAAGCCAAAGAGCTGCTGTTCTTACCTAGGTAG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGTGGACACAGTCAAGCCAAAGAGCTGCTGTTCTTACCTAGGTAG  600

seq1  AAAATGTCTGAATGCTCCTCTGGCTTCTTTCTGATGCTGCGCAAAGGTGA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCTGAATGCTCCTCTGGCTTCTTTCTGATGCTGCGCAAAGGTGA  650

seq1  CTCATCACTTTTGTTAATGTCAGAGCTGACTGCTTCCCATTTACAGAAAC  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCACTTTTGTTAATGTCAGAGCTGACTGCTTCCCATTTACAGAAAC  700

seq1  ACCCATTATTCATCCTCATAACCTACTCTTTATATTTAAAAAAATGTGCC  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTATTCATCCTCATAACCTACTCTTTATATTTAAAAAAATGTGCC  750

seq1  TTTTTTTCTTTTAATTACATTGTGTGTGTGTGTGTATGTGTGTGTGTCTG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTAATTACATTGTGTGTGTGTGTGTATGTGTGTGTGTCTG  800

seq1  TGTGTGTGTACTTGCCACTGCACACACGTGGAAATCAGAGAGGATTCTCT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTACTTGCCACTGCACACACGTGGAAATCAGAGAGGATTCTCT  850

seq1  TTTTCCATCATCATGTGGGTCATGGGGATTGAACTCAGGTCCTCTGGCTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCATCATCATGTGGGTCATGGGGATTGAACTCAGGTCCTCTGGCTT  900

seq1  AGCAGCAAGCATCTTTGCTCTTGATCCAACTAACAAGGCTTTCACCTACT  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCAAGCATCTTTGCTCTTGATCCAACTAACAAGGCTTTCACCTACT  950

seq1  CCATTCAAAAGGAGCCACAGTCTTGCTGGTATTGGAAATAAGACTTCATT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCAAAAGGAGCCACAGTCTTGCTGGTATTGGAAATAAGACTTCATT  1000

seq1  CACATGTTTTTACCTTTTCTCTTCCAATCTTAAACCTGAAGACAAAGAAT  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTTTTTACCTTTTCTCTTCCAATCTTAAACCTGAAGACAAAGAAT  1050

seq1  TC  1031
      ||
seq2  TC  1052

seq1: chr14_99614261_99615047
seq2: B6Ng01-194I24.g_307_1101

seq1  CATGGAGTTCTGTCTAGGAAATTTCCCCCCTGTGCCAATGAGTTCAAGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGTTCTGTCTAGGAAATTTCCCCCCTGTGCCAATGAGTTCAAGGC  50

seq1  GTTTTCCCACTTTCTCTTCTAATTTTCCCACTTTCTCTTCTAATTTTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCCCACTTTCTCTTCTAATTTTCCCACTTTCTCTTCTAATTTTCCC  100

seq1  ACTTTCTCTTCTATTAGATTCAATGTATCTGGTTTTATGTTGAGGTCCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCTTCTATTAGATTCAATGTATCTGGTTTTATGTTGAGGTCCTT  150

seq1  GATCCACTTGGACTTGAGTTTTGTACAAGGTAAAAAATAAGGGTCTATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACTTGGACTTGAGTTTTGTACAAGGTAAAAAATAAGGGTCTATCT  200

seq1  TCATTCTTCTACATAGAGACAGCCAGTTAGACCAGCACCATTTACTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTTCTACATAGAGACAGCCAGTTAGACCAGCACCATTTACTGGAG  250

seq1  ATGCTTTCTGTTTCCCATTGTATATCTTTGGTGTCTTTGTCAAAGACCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCTGTTTCCCATTGTATATCTTTGGTGTCTTTGTCAAAGACCAA  300

seq1  GTGACCAGAAGTGTCTGGTTTTATTTCTGGGTCTTCGATTCTATTCCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGAAGTGTCTGGTTTTATTTCTGGGTCTTCGATTCTATTCCATC  350

seq1  GATCAACCTGTCTGTCTCTGCACCAGCACCATGCAGTTTTTATTGCTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAACCTGTCTGTCTCTGCACCAGCACCATGCAGTTTTTATTGCTCTG  400

seq1  TAGTAAAGCTTGAGGTCAGGGATGGGGATTCTCCCAGCTCTTCTTTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAAGCTTGAGGTCAGGGATGGGGATTCTCCCAGCTCTTCTTTTTAT  450

seq1  TCTTAAGAATTGTTTTTGATCTTCTGGGTTTTTGGCTTTCCAGATGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGAATTGTTTTTGATCTTCTGGGTTTTTGGCTTTCCAGATGAATC  500

seq1  CTAAGCATGTAGTTATTTTAGGGAAACTGAGGACGAAACTAAAGATGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGCATGTAGTTATTTTAGGGAAACTGAGGACGAAACTAAAGATGAAA  550

seq1  CTTTTTGTCAGAGTGTTATATATTTATTACAGATTTTATAATAC-TTTCA  599
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTTTTTGTCAGAGTGTTATATATTTATTACAGATTTTATAATACTTTTCA  600

seq1  -TTCTACCTTTATAATCTTGGAGAATGGATATGTAAAAA-CCTAGAGCAA  647
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTCTACCTTTATAATCTTGGAGAATGGATATGTAAAAACCCTAGAGCAA  650

seq1  AATGCCTCCTACACTTT--GCCTTGGAATAATTTTTAAGTACTATATTGC  695
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  AATGCCTCCTACACTTTTGCCCTTGGAATAATTTTTAAGTACTATATTGC  700

seq1  TAAGAATCAGAGTAACT--GGAAATGTTTAATTAATTTGTTTAATTTAAT  743
      |||||||||||||||||  | |||||||||||  | ||| ||||||||||
seq2  TAAGAATCAGAGTAACTTGGAAAATGTTTAAT--AATTGGTTAATTTAAT  748

seq1  TAAAATGTTTCATTAATCT-GTTAGAAAAGATTT-CGTAG-ATAAAT  787
      ||||||||| ||||||||| |||||||||||||| ||||| ||||||
seq2  TAAAATGTTCCATTAATCTGGTTAGAAAAGATTTCCGTAGAATAAAT  795