BAC Information

Click to search

BAC

Clone NameB6Ng01-194N20
Chromosome14 (Build37)
Map Location 8,653,911 - 8,809,292
singlet/doubletdoublet
Overlap geneFlnb, Dnase1l3
Upstream geneLOC100041700, LOC100042054, LOC100042100, EG622781, LOC100041740, LOC100038847, LOC100042129, LOC100041770, LOC100042149, LOC544988, EG626456, LOC100041791, LOC100042164, LOC100042182, LOC100041808, LOC100042192, LOC100042207, EG432817, LOC100042217, LOC100041830, LOC100042235, EG545013, EG666947, LOC623215, LOC100042286, LOC666957, LOC100042263, LOC100042258, LOC100042272, LOC100041874, LOC100042304, LOC100041881, LOC100042312, LOC100041893, ENSMUSG00000058570, EG666976
Downstream geneAbhd6, Rpp14, Pxk, Pdhb, Kctd6, Acox2, BC055107, Oit1, LOC667005, 4930452B06Rik, LOC100041948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-194N20.bB6Ng01-194N20.g
ACCGA017442GA017443
length1,1331,160
definitionB6Ng01-194N20.b B6Ng01-194N20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,653,911 - 8,655,046)(8,808,120 - 8,809,292)
sequence
gaattcagagcatcgctgtacaccgtggctaacgcccaacagtttacact
gtgagaacctttagaatcatgtccgtaaacccagctgtgagacatgagat
ggtcagcagctgccagaggccagtgacatatctgccaataacttctgaaa
gacagccatggctatttgtttgctcacatttgtggtttatcagaagttgg
tcccaccctaggcgctatcccaacattgagagttttgtttagtttcctat
gtcttgagcagttcgcagagaggctcagcctgcctggttacagggttttt
gtcaggagttggcagtattatttacttgttttctccacaaatctttctga
cttttgggcagcccagcttactttggaaagaaaagaagtctccaggccca
agaatgacaattgaggctgctagaaatttgggtaatctattatggtttgg
tcctctgaaaaaggattttcttcttccccgtttacaagatgcagctgacg
ctgatgcacagggtcaacctaggcactgttagtgtgagttcctaagcctt
tgggtccctggctgggtcaccatgccactagcatctccttctttttgtct
cctcatcactaatctgatgcagttcccatttgtgattccttatgaacgag
caagcaaaagccactgtgttcttttggaccatgaaatctaagagccacag
agagtacttatgtagcaaaatctcaatttgttagaattgacaaattcagg
gccatttgcaacaagacagaagcacattactgtgaggtatattaagggca
aagggggtcggtcaattctctcttgccacaaagtaactattaaaaatttt
ctacacctctattgtctaattgctgaaagagaaataataataacacctta
gaaaagttgttgcaaggataattttacatattctttttgcttgcaataaa
gttaatattcctaaagtggctgaaacaggactggagagtgggcttagtag
ctagacctcttgctgtcttgcagaggatccgagttcaattctcagcacac
atacgatgtctcaaccttattctgtaaattccagttccaggataggtgtg
ctcttttgaactccgtaaggcactaagcacaca
gaattcaatccccagaaaccgtaaagtaatagacaacccccatacacaca
cacacacacacacacacacacacacacacacacacacatacagagagaga
gagagagagagagagagagagagagagagagagagagagagagagcaaca
gcacctaaggaacactccccaggttgcaggctggcccccacaagcatgcc
tatatgtgtgcttgcacatgtgtacagcctgccacacataagcaattcta
caagttgtcccaattcacagctgagaactgtgaggtagagaggtcaggag
tgtttcagaggcaagatcatgaaaaggagaagcaatatggaggctgctcc
tcaaggcagccatcacctctccatttggaaggctctgagctgagggtttg
aggaaggacctggtaaatgcggaagggctcagatggctctcctgtcaaat
tcctctttttttcctttcggaatatgatgctgagagtccctcttccttct
tagttcctctgctaaaggtatgaaatgagtcaagtgtggacacagctggc
cagaactgaccatcaagaagcccaggagtgtattttattgcttatttgta
agttccaggacaaatgataaatcccatgcattcagcaagagtatattgag
catctatcgatcaatagaccccgaggaagaaaccttggatgaggaacctt
cagaagggcagattgaagtttgacccctaatgcttcaagctcctggctgg
tggcctagagctgcccatccgatccctttaagggttagagtctaacctgt
tctttccatggctaatggtgctttcaaaccaagctgaattgagtttgtaa
gtcactccatgcaggtcagagatgatgttctgtccttgactgtgtacctt
aatctcaagggaaaccctaattgcagatatcaaaataaattgttcttaag
gaaaactcgaaagtcagctatcatctcaaacaatagcacaaaaaggaaat
aagcttgtttcctctgtagtgtgggatgttaaattctctttctttggcct
tggagatgtcattgggaacttccaacggtgtggttatagggtggagaaag
gcagtaaactttagactggcctccttgacttctcagactgaagtaggctt
agtttctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_8653911_8655046
seq2: B6Ng01-194N20.b_44_1176

seq1  GAATTCAGAGCATCGCTGTACACCGTGGCTAACGCCCAACAGTTTACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCATCGCTGTACACCGTGGCTAACGCCCAACAGTTTACACT  50

seq1  GTGAGAACCTTTAGAATCATGTCCGTAAACCCAGCTGTGAGACATGAGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGAACCTTTAGAATCATGTCCGTAAACCCAGCTGTGAGACATGAGAT  100

seq1  GGTCAGCAGCTGCCAGAGGCCAGTGACATATCTGCCAATAACTTCTGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGCAGCTGCCAGAGGCCAGTGACATATCTGCCAATAACTTCTGAAA  150

seq1  GACAGCCATGGCTATTTGTTTGCTCACATTTGTGGTTTATCAGAAGTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCATGGCTATTTGTTTGCTCACATTTGTGGTTTATCAGAAGTTGG  200

seq1  TCCCACCCTAGGCGCTATCCCAACATTGAGAGTTTTGTTTAGTTTCCTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCCTAGGCGCTATCCCAACATTGAGAGTTTTGTTTAGTTTCCTAT  250

seq1  GTCTTGAGCAGTTCGCAGAGAGGCTCAGCCTGCCTGGTTACAGGGTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGCAGTTCGCAGAGAGGCTCAGCCTGCCTGGTTACAGGGTTTTT  300

seq1  GTCAGGAGTTGGCAGTATTATTTACTTGTTTTCTCCACAAATCTTTCTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGTTGGCAGTATTATTTACTTGTTTTCTCCACAAATCTTTCTGA  350

seq1  CTTTTGGGCAGCCCAGCTTACTTTGGAAAGAAAAGAAGTCTCCAGGCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTGGGCAGCCCAGCTTACTTTGGAAAGAAAAGAAGTCTCCAGGCCCA  400

seq1  AGAATGACAATTGAGGCTGCTAGAAATTTGGGTAATCTATTATGGTTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACAATTGAGGCTGCTAGAAATTTGGGTAATCTATTATGGTTTGG  450

seq1  TCCTCTGAAAAAGGATTTTCTTCTTCCCCGTTTACAAGATGCAGCTGACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGAAAAAGGATTTTCTTCTTCCCCGTTTACAAGATGCAGCTGACG  500

seq1  CTGATGCACAGGGTCAACCTAGGCACTGTTAGTGTGAGTTCCTAAGCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCACAGGGTCAACCTAGGCACTGTTAGTGTGAGTTCCTAAGCCTT  550

seq1  TGGGTCCCTGGCTGGGTCACCATGCCACTAGCATCTCCTTCTTTTTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCCTGGCTGGGTCACCATGCCACTAGCATCTCCTTCTTTTTGTCT  600

seq1  CCTCATCACTAATCTGATGCAGTTCCCATTTGTGATTCCTTATGAACGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCACTAATCTGATGCAGTTCCCATTTGTGATTCCTTATGAACGAG  650

seq1  CAAGCAAAAGCCACTGTGTTCTTTTGGACCATGAAATCTAAGAGCCACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAAAAGCCACTGTGTTCTTTTGGACCATGAAATCTAAGAGCCACAG  700

seq1  AGAGTACTTATGTAGCAAAATCTCAATTTGTTAGAATTGACAAATTCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTACTTATGTAGCAAAATCTCAATTTGTTAGAATTGACAAATTCAGG  750

seq1  GCCATTTGCAACAAGACAGAAGCACATTACTGTGAGGTATATTAAGGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGCAACAAGACAGAAGCACATTACTGTGAGGTATATTAAGGGCA  800

seq1  AAGGGGGTCGGTCAATTCTCTCTTGCCACAAAGTAACTATTAAAAATTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGTCGGTCAATTCTCTCTTGCCACAAAGTAACTATTAAAAATTTT  850

seq1  CTACACCTCTATTGTCTAATTGCTGAAAGAGAAATAATAAATAACACCTT  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CTACACCTCTATTGTCTAATTGCTGAAAGAGAAATAAT-AATAACACCTT  899

seq1  AGAAAAGTTGTTGCAAGGATAATTTTACATAT--CTTTTGCTTGCAATAA  948
      ||||||||||||||||||||||||||||||||   ||||||||||||| |
seq2  AGAAAAGTTGTTGCAAGGATAATTTTACATATTCTTTTTGCTTGCAAT-A  948

seq1  AAGTTAATATTCCTAAAAGTGGCTGAAACAGGGACTGGAGAGTTGGCTTA  998
      |||||||||||||| ||||||||||||||| |||||||||||| ||||||
seq2  AAGTTAATATTCCT-AAAGTGGCTGAAACA-GGACTGGAGAGTGGGCTTA  996

seq1  GTAGCTAAGAACTCTTGCTGTTCTTGCAGAGGATCCGAGTTCAATTCTCA  1048
      |||||| ||| ||||||||| |||||||||||||||||||||||||||||
seq2  GTAGCT-AGACCTCTTGCTG-TCTTGCAGAGGATCCGAGTTCAATTCTCA  1044

seq1  GCACACATACGATGTCTCACAACTA-TCTGTAAA-TCCAGTCCCAGGGAA  1096
      |||||||||||||||||||    || |||||||| |||||| |||||  |
seq2  GCACACATACGATGTCTCAACCTTATTCTGTAAATTCCAGTTCCAGG--A  1092

seq1  TA-GTGTGCCTCTTTTGAACTCCAT-AGGCACTAGGCACACA  1136
      || ||||| |||||||||||||| | |||||||| |||||||
seq2  TAGGTGTG-CTCTTTTGAACTCCGTAAGGCACTAAGCACACA  1133

seq1: chr14_8808120_8809292
seq2: B6Ng01-194N20.g_67_1226 (reverse)

seq1  GGCAGAAACTAAAGCCTAACACTCAGTCCTTAGAGAGTCCTAAGGGAGGC  50
      |||||||||| |||||||    ||||| || ||| ||||  ||||  | |
seq2  GGCAGAAACT-AAGCCTA--CTTCAGT-CTGAGA-AGTC--AAGGAGGCC  43

seq1  AGTCCTAAGAGTTAACTGTCTTTCTCCACCCTATACCACCA-ACTGTTGG  99
      ||| |||| |||| |||| ||||||||||||||||  |||| || |||||
seq2  AGT-CTAA-AGTTTACTGCCTTTCTCCACCCTATA--ACCACACCGTTGG  89

seq1  AAGTGCCCCCATGACATCTCCAAGGGCCAAAGGAAGAGAATTTTAACATC  149
      ||||  ||| ||||||||||||| |||||||| ||||||| |||||||||
seq2  AAGT-TCCCAATGACATCTCCAA-GGCCAAAGAAAGAGAA-TTTAACATC  136

seq1  CCACACTACAGAGGAAAC-AGCTTATTTCCTTTTTTGTGCTATTGTTTGA  198
      |||||||||||||||||| ||||||||||| |||||||||||||||||||
seq2  CCACACTACAGAGGAAACAAGCTTATTTCC-TTTTTGTGCTATTGTTTGA  185

seq1  GATGATTGCTGACTTTCGAGTTTTCCTTAAGAACAATTTATTTTGATATC  248
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAGCTGACTTTCGAGTTTTCCTTAAGAACAATTTATTTTGATATC  235

seq1  TGCAATTAGGGTTTCCCTTGAGATTAAGGTACACAGTCAAGGACAGAACA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATTAGGGTTTCCCTTGAGATTAAGGTACACAGTCAAGGACAGAACA  285

seq1  TCATCTCTGACCTGCATGGAGTGACTTACAAACTCAATTCAGCTTGGTTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTCTGACCTGCATGGAGTGACTTACAAACTCAATTCAGCTTGGTTT  335

seq1  GAAAGCACCATTAGCCATGGAAGGAACAGGTTAGACTCTAACCCTTAAAG  398
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAAGCACCATTAGCCATGGAAAGAACAGGTTAGACTCTAACCCTTAAAG  385

seq1  GGATCGGATGGGCAGCTCTAGGCCACCAGCCAGGAGCTTGAAGCATTAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGGATGGGCAGCTCTAGGCCACCAGCCAGGAGCTTGAAGCATTAGG  435

seq1  GGTCAAACTTCAATCTGCCCTTCTGAAGGTTCCTCATCCAAGGTTTCTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAACTTCAATCTGCCCTTCTGAAGGTTCCTCATCCAAGGTTTCTTC  485

seq1  CTCGGGGTCTATTGATCGATAGATGCTCAATATACTCTTGCTGAATGCAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGTCTATTGATCGATAGATGCTCAATATACTCTTGCTGAATGCAT  535

seq1  GGGATTTATCATTTGTCCTGGAACTTACAAATAAGCAATAAAATACACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTATCATTTGTCCTGGAACTTACAAATAAGCAATAAAATACACTC  585

seq1  CTGGGCTTCTTGATGGTCAGTTCTGGCCAGCTGTGTCCACACTTGACTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTCTTGATGGTCAGTTCTGGCCAGCTGTGTCCACACTTGACTCA  635

seq1  TTTCATACCTTTAGCAGAGGAACTAAGAAGGAAGAGGGACTCTCAGCATC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATACCTTTAGCAGAGGAACTAAGAAGGAAGAGGGACTCTCAGCATC  685

seq1  ATATTCCGAAAGGAAAAAAAGAGGAATTTGACAGGAGAGCCATCTGAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCGAAAGGAAAAAAAGAGGAATTTGACAGGAGAGCCATCTGAGCC  735

seq1  CTTCCGCATTTACCAGGTCCTTCCTCAAACCCTCAGCTCAGAGCCTTCCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCGCATTTACCAGGTCCTTCCTCAAACCCTCAGCTCAGAGCCTTCCA  785

seq1  AATGGAGAGGTGATGGCTGCCTTGAGGAGCAGCCTCCATATTGCTTCTCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAGAGGTGATGGCTGCCTTGAGGAGCAGCCTCCATATTGCTTCTCC  835

seq1  TTTTCATGATCTTGCCTCTGAAACACTCCTGACCTCTCTACCTCACAGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGATCTTGCCTCTGAAACACTCCTGACCTCTCTACCTCACAGTT  885

seq1  CTCAGCTGTGAATTGGGACAACTTGTAGAATTGCTTATGTGTGGCAGGCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGTGAATTGGGACAACTTGTAGAATTGCTTATGTGTGGCAGGCT  935

seq1  GTACACATGTGCAAGCACACATATAGGCATGCTTGTGGGGGCCAGCCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACATGTGCAAGCACACATATAGGCATGCTTGTGGGGGCCAGCCTGC  985

seq1  AACCTGGGGAGTGTTCCTTAGGTGCTGTTGCTCTCTCTCTCTCTCTCTCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGGGGAGTGTTCCTTAGGTGCTGTTGCTCTCTCTCTCTCTCTCTCT  1035

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTGTGTGTGT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTATGTGTGTGTGTGT  1085

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGGGGTTGTCTATTAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGGGGGTTGTCTATTAC  1135

seq1  TTTACGGTTTCTGGGGATTGAATTC  1173
      |||||||||||||||||||||||||
seq2  TTTACGGTTTCTGGGGATTGAATTC  1160