BAC Information

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BAC

Clone NameB6Ng01-195G17
Chromosome14 (Build37)
Map Location 37,876,937 - 37,878,088
singlet/doubletsinglet
Overlap geneLrrc21
Upstream geneLOC665933, 4930474N05Rik, Gcap14, LOC100040341, LOC670331, Rgr
Downstream geneLrrc22, Pcdh21, 2610528A11Rik, Ghitm, LOC382871, LOC382872
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195G17.bB6Ng01-195G17.g
ACCGA017845GA017846
length1,152650
definitionB6Ng01-195G17.b B6Ng01-195G17.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttgctgagtttcgcctatggcatagattgctgagatgcttgtgc
acaggagtgagtgaacgttcctactgaaaactctgtttattgtttgccta
ctgagaagatgggtagcaagtcctttggtaacaattgtggacttccacag
tcagaagtgatccgaggaaagtatttaaccagcaccactcaagataattg
atatcatgtgaatattgactagatgtaaatccccttattatttccaaaag
acctcacaacatgcccctaacagcccattctagaggttggtaattttgat
ttttgattttacagatgaagaaactaagaaccaagtatatgtgcagacag
gagaaatgaattttctttggaatccatgtctttgacaagtttttggatgc
tatgtcttactcattaatgatctttgaagtatggcccacagtttactatg
aaaactgaatttttggtagtcaccgaaacctggaattagaaccacaagaa
cacaggtgcacacggacattagagtcaccaaacttgatatttttctgtca
cctccatgaaggttgtatttgattataacttgtgggtcattaccattagc
aagaaaagctacttggttggacagtaatggccttgtctgcatcagggatc
aacatgatattttttggcaaacaaaacttgataatgaatattacaagctc
tgtcattgctaatggaatggggaaaaatatagactacaggtgagttaatg
ggcatggatgtgatccaataaaatgtttacaaaaacagataacaaactgg
aatcaatatccaattagctttactgcattttgtaaaaggaaaaccaggaa
cttgaaagcaatatatatatatatatatatatatatatgtatatatacac
ccaatatttgactgagaaacagaggaggagaaaggagcagagaaagagaa
aaaaatagggatgggatcaaatttttcagcagtctaggatggcttgcttt
caggtgtgggtgatcattgcctctaagatgtcaagattctgatctcatgt
atcaactttctactgtgttctgtctttcctgagtttctcttggtaggaag
agttcttctggaagtgatccttgtgtgtatttatgctacttaaaacaaac
tc

gaattccaagacagcaaaaatagaacacttcccaagcacagatatctaag
caaacagttcccatttccatgaacacttccccttctcacagatatgttac
tcaggttccaaaaaattaatgtcatatgccatatactggttataattttc
tctatatattcaatgtgatacactgatcacttctttcatatagacaatgc
atgtacatgaatgtatgcaagcagatatgtgtctcaagaactctggggaa
tgggtttttattttttttaagggagtagaaaatagtggcttagaaagatt
ttgctgacaggaccctgacatagctctctcttgtgaggccatgccaatgc
ctgacaagtacaaaagtggatgctcacagtcgtctattggatggaacaca
gggcccctaatgaagtactcaaggagctaaaggggtctgcaaccctatag
gaggaacaacaatatgaactaaccagtactccccaccccaccacccccca
gagcaactagtgtctctagttgcatatgtagcagaggatggcctagtcag
ccatcaatgggagaagaggcccttggtattgcgaagatcatgtgccccag
tacaggagaatgccagggccaggaagtgggagtgggtgggttggggagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_37876937_37878088
seq2: B6Ng01-195G17.b_44_1195

seq1  GAATTCTTGCTGAGTTTCGCCTATGGCATAGATTGCTGAGATGCTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCTGAGTTTCGCCTATGGCATAGATTGCTGAGATGCTTGTGC  50

seq1  ACAGGAGTGAGTGAACGTTCCTACTGAAAACTCTGTTTATTGTTTGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAGTGAGTGAACGTTCCTACTGAAAACTCTGTTTATTGTTTGCCTA  100

seq1  CTGAGAAGATGGGTAGCAAGTCCTTTGGTAACAATTGTGGACTTCCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGATGGGTAGCAAGTCCTTTGGTAACAATTGTGGACTTCCACAG  150

seq1  TCAGAAGTGATCCGAGGAAAGTATTTAACCAGCACCACTCAAGATAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGTGATCCGAGGAAAGTATTTAACCAGCACCACTCAAGATAATTG  200

seq1  ATATCATGTGAATATTGACTAGATGTAAATCCCCTTATTATTTCCAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATGTGAATATTGACTAGATGTAAATCCCCTTATTATTTCCAAAAG  250

seq1  ACCTCACAACATGCCCCTAACAGCCCATTCTAGAGGTTGGTAATTTTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCACAACATGCCCCTAACAGCCCATTCTAGAGGTTGGTAATTTTGAT  300

seq1  TTTTGATTTTACAGATGAAGAAACTAAGAACCAAGTATATGTGCAGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATTTTACAGATGAAGAAACTAAGAACCAAGTATATGTGCAGACAG  350

seq1  GAGAAATGAATTTTCTTTGGAATCCATGTCTTTGACAAGTTTTTGGATGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATGAATTTTCTTTGGAATCCATGTCTTTGACAAGTTTTTGGATGC  400

seq1  TATGTCTTACTCATTAATGATCTTTGAAGTATGGCCCACAGTTTACTATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTTACTCATTAATGATCTTTGAAGTATGGCCCACAGTTTACTATG  450

seq1  AAAACTGAATTTTTGGTAGTCACCGAAACCTGGAATTAGAACCACAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGAATTTTTGGTAGTCACCGAAACCTGGAATTAGAACCACAAGAA  500

seq1  CACAGGTGCACACGGACATTAGAGTCACCAAACTTGATATTTTTCTGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTGCACACGGACATTAGAGTCACCAAACTTGATATTTTTCTGTCA  550

seq1  CCTCCATGAAGGTTGTATTTGATTATAACTTGTGGGTCATTACCATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAAGGTTGTATTTGATTATAACTTGTGGGTCATTACCATTAGC  600

seq1  AAGAAAAGCTACTTGGTTGGACAGTAATGGCCTTGTCTGCATCAGGGATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCTACTTGGTTGGACAGTAATGGCCTTGTCTGCATCAGGGATC  650

seq1  AACATGATATTTTTTGGCAAACAAAACTTGATAATGAATATTACAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATATTTTTTGGCAAACAAAACTTGATAATGAATATTACAAGCTC  700

seq1  TGTCATTGCTAATGGAATGGGGAAAAATATAGACTACAGGTGAGTTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGCTAATGGAATGGGGAAAAATATAGACTACAGGTGAGTTAATG  750

seq1  GGCATGGATGTGATCCAATAAAATGTTTACAAAAACAGATAACAAACTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGGATGTGATCCAATAAAATGTTTACAAAAACAGATAACAAACTGG  800

seq1  AATCAATATCCAATTAGCTTTACTGCATTTTGTAAAAGGAAAACCAGGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATATCCAATTAGCTTTACTGCATTTTGTAAAAGGAAAACCAGGAA  850

seq1  CTTGAAAGCAATATATATATATATATATATATATATATGTATATATACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAAGCAATATATATATATATATATATATATATATGTATATATACAC  900

seq1  CCAATA-TTGACTGAGAAACAGAGGAGGAGAAAGGAGCAGAGAAAGAGAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTTGACTGAGAAACAGAGGAGGAGAAAGGAGCAGAGAAAGAGAA  950

seq1  AAAAATAGGGATGGGATCAAATTTTCCAGCAGTCTAGGAGGGC-TGCCTT  998
      ||||||||||||||||||||||||| ||||||||||||| ||| ||| ||
seq2  AAAAATAGGGATGGGATCAAATTTTTCAGCAGTCTAGGATGGCTTGCTTT  1000

seq1  CAGGGTGTGGGTGATCATTGCCTCTAAGATGTCCAGATTCTTGATCTCAA  1048
      || |||||||||||||||||||||||||||||| |||||| ||||||| |
seq2  CA-GGTGTGGGTGATCATTGCCTCTAAGATGTCAAGATTC-TGATCTC-A  1047

seq1  TGTATCAACTTTCCTACCTGTGTTCTGTCTTCCCTGAGTTTTCTCTTGTA  1098
      |||||||||||| ||| |||||||||||||| |||||| |||||||||  
seq2  TGTATCAACTTT-CTA-CTGTGTTCTGTCTTTCCTGAG-TTTCTCTTGGT  1094

seq1  GGGAAGAG-TCTTCTGG-AGTG-TTCTTGTGGGTATTTATGTTAC-TAAA  1144
       ||||||| |||||||| |||| | |||||| ||||||||| ||| ||||
seq2  AGGAAGAGTTCTTCTGGAAGTGATCCTTGTGTGTATTTATGCTACTTAAA  1144

seq1  ACAAACTC  1152
      ||||||||
seq2  ACAAACTC  1152


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