BAC Information

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BAC

Clone NameB6Ng01-195P17
Chromosome14 (Build37)
Map Location 57,598,855 - 57,724,208
singlet/doubletdoublet
Overlap geneLOC100042817, B020004C17Rik, Gja3, Gjb2
Upstream geneLOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2
Downstream geneLOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096, Ift88, Il17d, N6amt2, Xpo4, Lats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195P17.bB6Ng01-195P17.g
ACCGA018252GA018253
length464977
definitionB6Ng01-195P17.b B6Ng01-195P17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,723,739 - 57,724,208)(57,598,855 - 57,599,809)
sequence
aaagaaatagaagccagaatttggccagccctggcggcgccctctgttag
tctgccttgaacccgaattctagatgcctcagctcactgcactacgggag
aggagtctcctgtgcgctactggaagctgcaggccaacacaaaactgtac
cgtccgtttatctaacacgcacacacacacacacacacacacacacacac
acacacaagtatatataatattactacagcgaagcttcgaatataacagc
acactttccactagtgagagtagtaagagcaacatcaactctctttcaac
atcacccaatcccccaaaagcgagtagctgggacttggagctttgcgacc
tgcgtcctgggtgaagacacaggtctaccagctctgttcaggctgcgctc
gggacaggacactggaagagccttgagctcaaagagagctgggggtgggg
tggggcggagtggg
gaattcactgggttttgaatccatgaatgggatctttcgtaagacttgat
aattatcgacttttaaaatattgtccctgcccccaacttcctccttccct
tctagcatgttgatttgttgtttattttgttttgttttatttttgtttta
caagatggggtttctctgtgtactcctggctgtcttggaattctttctgt
agaccaggctggcctcaaactcacagagatccacctgctccttactcctg
agtgctggcattaaagacgtgtgctatcacctggctagcatgttgattta
acaggaaacttttgatccttgagcttctttctcatgctgctagagtagaa
gagactcctggccaaaagaatcaaatctctagcctgggtggaggcttaac
attctagatgaatagttcatttacttagccaaaggaccacccttaggaag
gctggcttaccttaggccaagctaagagataggaagaattattaagcctt
tactaagaaatgtactattgccttcacagaatctccacccttatggaaat
acatgcaggctacagacatccatatggcatgaaagtatgttggctttaat
ttttcccttttctcctttccttttctttttgagagagggtttccttatgt
agccttggctatcatggatctctcacagtaggccaggtgggccaccactg
actatctctctctctctctctctctctctctctctctctctctctcacaa
acacacacacacacacacacacagattttattttattttattttactata
tgtaagtacacttgtagctgtccttcagacactcctcataaagaggggca
tcagtatctttattaatggatggttgtgagccacccatgtaattttctgg
gatctgaacttatgatcctttcggaagaacagtcagtggttcttaaccac
tgagtccattctctaccaagccctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_57723739_57724208
seq2: B6Ng01-195P17.b_44_513 (reverse)

seq1  CCCACTCCGCCCCACCCCACCCCCAGCTCTCTTTGAGCTCAAGGCTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTCCGCCCCACCCCACCCCCAGCTCTCTTTGAGCTCAAGGCTCTTC  50

seq1  CAGTGTCCTGTCCCGAGCGCAGCCTGAACAGAGCTGGTAGACCTGTGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCCTGTCCCGAGCGCAGCCTGAACAGAGCTGGTAGACCTGTGTCT  100

seq1  TCACCCAGGACGCAGGTCGCAAAGCTCCAAGTCCCAGCTACTCGCTTTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAGGACGCAGGTCGCAAAGCTCCAAGTCCCAGCTACTCGCTTTTG  150

seq1  GGGGATTGGGTGATGTTGAAAGAGAGTTGATGTTGCTCTTACTACTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATTGGGTGATGTTGAAAGAGAGTTGATGTTGCTCTTACTACTCTCA  200

seq1  CTAGTGGAAAGTGTGCTGTTATATTCGAAGCTTCGCTGTAGTAATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGGAAAGTGTGCTGTTATATTCGAAGCTTCGCTGTAGTAATATTAT  250

seq1  ATATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTGT  300

seq1  TAGATAAACGGACGGTACAGTTTTGTGTTGGCCTGCAGCTTCCAGTAGCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAACGGACGGTACAGTTTTGTGTTGGCCTGCAGCTTCCAGTAGCG  350

seq1  CACAGGAGACTCCTCTCCCGTAGTGCAGTGAGCTGAGGCATCTAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGAGACTCCTCTCCCGTAGTGCAGTGAGCTGAGGCATCTAGAATTC  400

seq1  GGGTTCAAGGCAGACTAACAGAGGGCGCCGCCAGGGCTGGCCAAATTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCAAGGCAGACTAACAGAGGGCGCCGCCAGGGCTGGCCAAATTCTG  450

seq1  GCTTCTATTTCTTTGAATTC  470
      ||||||||||||||||||||
seq2  GCTTCTATTTCTTTGAATTC  470

seq1: chr14_57598855_57599809
seq2: B6Ng01-195P17.g_68_1044

seq1  GAATTCACTGGGTTTTGAATCCATGAATGGGATCTTTCGTAAGACTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGTTTTGAATCCATGAATGGGATCTTTCGTAAGACTTGAT  50

seq1  AATTATCGACTTTTAAAATATTGTCCCTGCCCCCAACTTCCTCCTTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATCGACTTTTAAAATATTGTCCCTGCCCCCAACTTCCTCCTTCCCT  100

seq1  TCTAGCATGTTGATTTGTTGTTTATTTTGTTTTGTTTTATTTTTGTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCATGTTGATTTGTTGTTTATTTTGTTTTGTTTTATTTTTGTTTTA  150

seq1  CAAGATGGGGTTTCTCTGTGTACTCCTGGCTGTCTTGGAATTCTTTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGGGTTTCTCTGTGTACTCCTGGCTGTCTTGGAATTCTTTCTGT  200

seq1  AGACCAGGCTGGCCTCAAACTCACAGAGATCCACCTGCTCCTTACTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGCTGGCCTCAAACTCACAGAGATCCACCTGCTCCTTACTCCTG  250

seq1  AGTGCTGGCATTAAAGACGTGTGCTATCACCTGGCTAGCATGTTGATTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGCATTAAAGACGTGTGCTATCACCTGGCTAGCATGTTGATTTA  300

seq1  ACAGGAAACTTTTGATCCTTGAGCTTCTTTCTCATGCTGCTAGAGTAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAACTTTTGATCCTTGAGCTTCTTTCTCATGCTGCTAGAGTAGAA  350

seq1  GAGACTCCTGGCCAAAAGAATCAAATCTCTAGCCTGGGTGGAGGCTTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTGGCCAAAAGAATCAAATCTCTAGCCTGGGTGGAGGCTTAAC  400

seq1  ATTCTAGATGAATAGTTCATTTACTTAGCCAAAGGACCACCCTTAGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGATGAATAGTTCATTTACTTAGCCAAAGGACCACCCTTAGGAAG  450

seq1  GCTGGCTTACCTTAGGCCAAGCTAAGAGATAGGAAGAATTATTAAGCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTACCTTAGGCCAAGCTAAGAGATAGGAAGAATTATTAAGCCTT  500

seq1  TACTAAGAAATGTACTATTGCCTTCACAGAATCTCCACCCTTATGGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGAAATGTACTATTGCCTTCACAGAATCTCCACCCTTATGGAAAT  550

seq1  ACATGCAGGCTACAGACATCCATATGGCATGAAAGTATGTTGGCTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGGCTACAGACATCCATATGGCATGAAAGTATGTTGGCTTTAAT  600

seq1  TTTTCCCTTTTCTCCTTTCCTTTTCTTTTTGAGAGAGGGTTTCCTTATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTTTTCTCCTTTCCTTTTCTTTTTGAGAGAGGGTTTCCTTATGT  650

seq1  AGCCTTGGCTATCATGGATCTCTCACAGTAGGCCAGGTGGGCCACCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGGCTATCATGGATCTCTCACAGTAGGCCAGGTGGGCCACCACTG  700

seq1  ACTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACAA  750

seq1  ACACACACACACACACACACACAGATTT--ATTTATTT--ATTTACTATA  796
      ||||||||||||||||||||||||||||   |||||||   |||||||||
seq2  ACACACACACACACACACACACAGATTTTATTTTATTTTATTTTACTATA  800

seq1  TGTAAGTACAC-TGTAGCTGT-CTTCAGACACCCC---AGAAGA-GGGCA  840
      ||||||||||| ||||||||| |||||||||| ||     |||| |||||
seq2  TGTAAGTACACTTGTAGCTGTCCTTCAGACACTCCTCATAAAGAGGGGCA  850

seq1  TCAG-ATC-TTATT-ATGGATGGTTGTGAGCCA-CCATGT-AGTTTCTGG  885
      |||| ||| ||||| |||||||||||||||||| |||||| | |||||||
seq2  TCAGTATCTTTATTAATGGATGGTTGTGAGCCACCCATGTAATTTTCTGG  900

seq1  GATCTGAACTCAGGA--CCTTCGGAAGAACAGTCAGT-GCTCTTAACCAC  932
      |||||||||| | ||  | |||||||||||||||||| | ||||||||||
seq2  GATCTGAACTTATGATCCTTTCGGAAGAACAGTCAGTGGTTCTTAACCAC  950

seq1  TGAGTC--ATCTCT--CCAGCCCTCTG  955
      ||||||   |||||  | |||||||||
seq2  TGAGTCCATTCTCTACCAAGCCCTCTG  977