BAC Information

Click to search

BAC

Clone NameB6Ng01-195P20
Chromosome14 (Build37)
Map Location 58,127,040 - 58,291,553
singlet/doubletdoublet
Overlap geneIft88, Il17d, N6amt2, Xpo4
Upstream geneRnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2, LOC100042817, B020004C17Rik, Gja3, Gjb2, LOC100043515, Gjb6, LOC668140, Cryl1, LOC668090, AU040096
Downstream geneLats2, Sap18, F630043A04Rik, Mrp63, Zdhhc20, Efha1, LOC668160, Fgf9, LOC100043554
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-195P20.bB6Ng01-195P20.g
ACCGA018258GA018259
length1,190799
definitionB6Ng01-195P20.b B6Ng01-195P20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,127,040 - 58,128,207)(58,290,755 - 58,291,553)
sequence
gaattcagagctctactttgctaactaagtttaacagttgtagttatcag
tggcaggtagttctaaccagacagcttggttccttgagaaccaactctga
cctgtttctccttagtccacaagagccgtgacacagtgtgagaagtgaga
acagtgttgagccttagttgaaggagcatcaaaggcagtttgccatgacc
aggaagagttgtcctccttggcagcatcccgtagctttgtcttcttactg
accctggctcccagacacctccccagctcctgctctgtagaatccacgtg
atctccagtcagactgagctgcatctcgagtctgaaagatgtaggtcacc
attccctcattagctggaggccgctgtaaagcccacaggcccctgtccag
gttctgagcgaagcatgctgtgaagccagaagttagtgtggagtattagc
cgtatctcctggatagccacatacaacacctcactgtgaggcacgcactg
tgttcttaatccagtgtcacatatgaatagccccactgaggaaaatcaag
cctgaacatagctcctatcatggtgtgtacctaagaagttcacacatggc
tacctgaaaacctggccttcacagctcacagacttttgaactgtaagtgg
gagacttaagaacctattgcaaaaaatcgaattagccaaggattgtgcag
caagaatctgtacatgcattaaaagaaactcttgacccaggccaagtgtc
acccacccttgacctcagccctgggccatcaaggcagaaagatctggagt
tctgggcccaacatggtctacactctgagaccctgtcatccctcccctcc
caaaaagaaaggaactctagaaaggttccccgtccaagggatagtgcatg
attacagaattcagggagacatgtgaccccgcgctctttcataatgagtg
gcccttttatagctgattctttaggataagccgctgcatttaaaagtctg
ggacctaaactgggtccccacggtgtaaagcccccacacttccaaggctg
aggcagaggatcacccacccacaagtttgtaagcccagccctattcctaa
ataggtggagtaccagttctacctgggtcctatagaggtgagaaaccctg
gctcaaaataccaaactaacttccattaacgaaaaaaatt
gaattcctgatctttccaagacttttatcatgaatgtctctattttcttg
gaaggtattattaactacatggtcacttaggaatatgacatattttgtaa
cttttttattatgttcaagttttcattaagtgctacctctctgcaggctg
aaatatcacaaaatagctaaacactcttaaatggcatagtctgtcctttg
ctgattaagcagtgtggtttttccgtatttcatgttaatggaacaaaata
atggtgggcagtgttattgtgaagcgttattctgagcaccgtcttacaca
tacggaatgcctgaaattgaagccgaaatgtttgcagaacctataggggg
tgtagtgtgtatagaagttgatcacaaattttggtatgtcaaaagaataa
agcaaataggtttatctactttggttacacactttaggtcattatgattt
actttccaaattttaatttttgtaccattttacccccaggctttggacct
ttggagaaagaattaacatcctagaaagaatagagaatttcttcatatcc
aattctccattctgaataaagataaggattgtcctgattagttttatgtc
gacttgacacaagctaaaagtcctttgggaagaaagactctcagttgaaa
aaaaaactgcctctataagattgggctgtgtacactcctgcaaggcattt
tctttgttagtgatcaatgcaggagggccaagcccattgtgagaggtata
aaccatgggctggtgggcctgggtgctataaaagcaaacaagctgaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_58127040_58128207
seq2: B6Ng01-195P20.b_45_1234

seq1  GAATTCAGAGCTCTACTTTGCTAACTAAGTTTAACAGTTGTAGTTATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCTCTACTTTGCTAACTAAGTTTAACAGTTGTAGTTATCAG  50

seq1  TGGCAGGTAGTTCTAACCAGACAGCTTGGTTCCTTGAGAACCAACTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGTAGTTCTAACCAGACAGCTTGGTTCCTTGAGAACCAACTCTGA  100

seq1  CCTGTTTCTCCTTAGTCCACAAGAGCCGTGACACAGTGTGAGAAGTGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTCTCCTTAGTCCACAAGAGCCGTGACACAGTGTGAGAAGTGAGA  150

seq1  ACAGTGTTGAGCCTTAGTTGAAGGAGCATCAAAGGCAGTTTGCCATGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGTTGAGCCTTAGTTGAAGGAGCATCAAAGGCAGTTTGCCATGACC  200

seq1  AGGAAGAGTTGTCCTCCTTGGCAGCATCCCGTAGCTTTGTCTTCTTACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAGTTGTCCTCCTTGGCAGCATCCCGTAGCTTTGTCTTCTTACTG  250

seq1  ACCCTGGCTCCCAGACACCTCCCCAGCTCCTGCTCTGTAGAATCCACGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGGCTCCCAGACACCTCCCCAGCTCCTGCTCTGTAGAATCCACGTG  300

seq1  ATCTCCAGTCAGACTGAGCTGCATCTCGAGTCTGAAAGATGTAGGTCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGTCAGACTGAGCTGCATCTCGAGTCTGAAAGATGTAGGTCACC  350

seq1  ATTCCCTCATTAGCTGGAGGCCGCTGTAAAGCCCACAGGCCCCTGTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCTCATTAGCTGGAGGCCGCTGTAAAGCCCACAGGCCCCTGTCCAG  400

seq1  GTTCTGAGCGAAGCATGCTGTGAAGCCAGAAGTTAGTGTGGAGTATTAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGAGCGAAGCATGCTGTGAAGCCAGAAGTTAGTGTGGAGTATTAGC  450

seq1  CGTATCTCCTGGATAGCCACATACAACACCTCACTGTGAGGCACGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTCCTGGATAGCCACATACAACACCTCACTGTGAGGCACGCACTG  500

seq1  TGTTCTTAATCCAGTGTCACATATGAATAGCCCCACTGAGGAAAATCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTAATCCAGTGTCACATATGAATAGCCCCACTGAGGAAAATCAAG  550

seq1  CCTGAACATAGCTCCTATCATGGTGTGTACCTAAGAAGTTCACACATGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACATAGCTCCTATCATGGTGTGTACCTAAGAAGTTCACACATGGC  600

seq1  TACCTGAAAACCTGGCCTTCACAGCTCACAGACTTTTGAACTGTAAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGAAAACCTGGCCTTCACAGCTCACAGACTTTTGAACTGTAAGTGG  650

seq1  GAGACTTAAGAACCTATTGCAAAAAATCGAATTAGCCAAGGATTGTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTTAAGAACCTATTGCAAAAAATCGAATTAGCCAAGGATTGTGCAG  700

seq1  CAAGAATCTGTACATGCATTAAAAGAAACTCTTGACCCAGGCCAAGTGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATCTGTACATGCATTAAAAGAAACTCTTGACCCAGGCCAAGTGTC  750

seq1  ACCCACCCTTGACCTCAGCCCTGGGCCATCAAGGCAGAAAGATCTGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCCTTGACCTCAGCCCTGGGCCATCAAGGCAGAAAGATCTGGAGT  800

seq1  TCTGGG-CCAACATGGTCTACACTCTGAGACCCTGTCATCCCTCCCCTCC  849
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCCCAACATGGTCTACACTCTGAGACCCTGTCATCCCTCCCCTCC  850

seq1  CAAAAAGAAAGGAACTCTAG-AAGGTTCCCCGTCCAAAGGGATAGTGCAT  898
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  CAAAAAGAAAGGAACTCTAGAAAGGTTCCCCGTCC-AAGGGATAGTGCAT  899

seq1  GATTACAGAA-TCAGGGAGACATGTGA-CCCGCGCTCTTTCATAATGAGT  946
      |||||||||| |||||||||||||||| ||||||||||||||||||||||
seq2  GATTACAGAATTCAGGGAGACATGTGACCCCGCGCTCTTTCATAATGAGT  949

seq1  GGCCCTTTTATAGCTGA-TCTTTAGGAT-AGCCGCTGCA-TTAAAAGTCT  993
      ||||||||||||||||| |||||||||| |||||||||| ||||||||||
seq2  GGCCCTTTTATAGCTGATTCTTTAGGATAAGCCGCTGCATTTAAAAGTCT  999

seq1  GGGA-CTAAACTGGGT-CCCAC-GTGTAA--GCCCCACACTTCAAAGGCT  1038
      |||| ||||||||||| ||||| ||||||   ||||||||||| ||||||
seq2  GGGACCTAAACTGGGTCCCCACGGTGTAAAGCCCCCACACTTCCAAGGCT  1049

seq1  GAGGCAGGAGGATCACC--ACCACAAGTTTG-AAG-CCAG-CCTA-TGCT  1082
      |||||| ||||||||||   ||||||||||| ||| |||| |||| | ||
seq2  GAGGCA-GAGGATCACCCACCCACAAGTTTGTAAGCCCAGCCCTATTCCT  1098

seq1  AAATAG--TGAGTACCAGGTCTACCTGG--TCTATAGA-GTGAG--ACCC  1125
      ||||||   ||||||||| |||||||||   ||||||| |||||  ||||
seq2  AAATAGGTGGAGTACCAGTTCTACCTGGGTCCTATAGAGGTGAGAAACCC  1148

seq1  TGTTTCAAAATACAAAACTAAACTTCAATAAAAGAAAAAAATT  1168
      ||  ||||||||| ||||| |||||| || || ||||||||||
seq2  TGGCTCAAAATACCAAACT-AACTTCCATTAACGAAAAAAATT  1190

seq1: chr14_58290755_58291553
seq2: B6Ng01-195P20.g_67_865 (reverse)

seq1  TGTTCAGCTTGTTTGCTTTTATAGCACCCAGGCCCACCAGCCCATGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGCTTGTTTGCTTTTATAGCACCCAGGCCCACCAGCCCATGGTTT  50

seq1  ATACCTCTCACAATGGGCTTGGCCCTCCTGCATTGATCACTAACAAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTCTCACAATGGGCTTGGCCCTCCTGCATTGATCACTAACAAAGAA  100

seq1  AATGCCTTGCAGGAGTGTACACAGCCCAATCTTATAGAGGCAGTTTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTTGCAGGAGTGTACACAGCCCAATCTTATAGAGGCAGTTTTTTT  150

seq1  TTCAACTGAGAGTCTTTCTTCCCAAAGGACTTTTAGCTTGTGTCAAGTCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGAGAGTCTTTCTTCCCAAAGGACTTTTAGCTTGTGTCAAGTCG  200

seq1  ACATAAAACTAATCAGGACAATCCTTATCTTTATTCAGAATGGAGAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAACTAATCAGGACAATCCTTATCTTTATTCAGAATGGAGAATTG  250

seq1  GATATGAAGAAATTCTCTATTCTTTCTAGGATGTTAATTCTTTCTCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGAAGAAATTCTCTATTCTTTCTAGGATGTTAATTCTTTCTCCAAA  300

seq1  GGTCCAAAGCCTGGGGGTAAAATGGTACAAAAATTAAAATTTGGAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAAAGCCTGGGGGTAAAATGGTACAAAAATTAAAATTTGGAAAGTA  350

seq1  AATCATAATGACCTAAAGTGTGTAACCAAAGTAGATAAACCTATTTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATAATGACCTAAAGTGTGTAACCAAAGTAGATAAACCTATTTGCTT  400

seq1  TATTCTTTTGACATACCAAAATTTGTGATCAACTTCTATACACACTACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTTGACATACCAAAATTTGTGATCAACTTCTATACACACTACAC  450

seq1  CCCCTATAGGTTCTGCAAACATTTCGGCTTCAATTTCAGGCATTCCGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATAGGTTCTGCAAACATTTCGGCTTCAATTTCAGGCATTCCGTAT  500

seq1  GTGTAAGACGGTGCTCAGAATAACGCTTCACAATAACACTGCCCACCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAAGACGGTGCTCAGAATAACGCTTCACAATAACACTGCCCACCATT  550

seq1  ATTTTGTTCCATTAACATGAAATACGGAAAAACCACACTGCTTAATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCCATTAACATGAAATACGGAAAAACCACACTGCTTAATCAGC  600

seq1  AAAGGACAGACTATGCCATTTAAGAGTGTTTAGCTATTTTGTGATATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGACAGACTATGCCATTTAAGAGTGTTTAGCTATTTTGTGATATTTC  650

seq1  AGCCTGCAGAGAGGTAGCACTTAATGAAAACTTGAACATAATAAAAAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCAGAGAGGTAGCACTTAATGAAAACTTGAACATAATAAAAAAGT  700

seq1  TACAAAATATGTCATATTCCTAAGTGACCATGTAGTTAATAATACCTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAATATGTCATATTCCTAAGTGACCATGTAGTTAATAATACCTTCC  750

seq1  AAGAAAATAGAGACATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  799
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATAGAGACATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  799