BAC Information

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BAC

Clone NameB6Ng01-196C07
Chromosome14 (Build37)
Map Location 89,913,787 - 90,013,733
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneEG328451, LOC100043336
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C07.bB6Ng01-196C07.g
ACCGA018364GA018365
length1,1251,154
definitionB6Ng01-196C07.b B6Ng01-196C07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,012,585 - 90,013,733)(89,913,787 - 89,914,958)
sequence
gaattcattgtccatctatcttcaggcacatttttccccagcatgtttca
ttcttcaaagcaccctccaagtaattttatttcaatttataaaatattgc
aagtgattatatgtttaacataatgtagtgtgtatatagtcaacatttca
tgtttgtttaaaatgttttcactatttaaaatactcagaatttgaagtca
gtagcatcacccatggaacaaagttttgattttaataaagagatagaata
aagaaattgatatagcaataactttaatgaaaaatttgtcataagaatac
atggttactttgtcttttccaaaaaacaaacaaacaaacaaacaaacaaa
caaacaaaaaacagagaaatatctaaattattatcaacttaaacgtattg
gtaatagataaagaacagaagataccaatgaataaattttgttcattaat
ccattattatttttaagtcttccttttttattttgtttttaaagcgagaa
tagatttttttttcatacagtatattctgattatggtctctctatccccc
actcctattaggttctccctaacttgtacccaccccactgaattaacaca
aaaaatacaatataaccagataaacaaacaagaaaaatagacataaaata
gcaaagtaaacaaaattgctcacaacttatgatcctgggcatggatctcc
tttgagcgtggttaatatactgatactgttttaaactttctctacacaaa
taataataaaaataaactctcaaaaacatacataagtcctatcaaacttt
gttttatttgatcacagaaactaaaatgtgaagatctgcagctacctgtt
tcacattaattcacattttaactcaaccttatcctcttggatcttctttt
ataactctcatatttcatatagaaaagcttcttactgtattgtatttaga
catatgtatgaacagaatatcatcagtgtattttttcatgtatgtaagat
tatttcagttgtagaatctagataggaaatatgacttaactagttttcca
ctctcaggttctaggatctcagctaccagataaatggtccaatacatgga
atcctatcatgcactgcataattat

gaattctcccagagaccctctcagcccagaatttctgcctttctgttcct
tcctagcaatataggccagcagcttttttattaaagctaatcagagaatg
ccttaggcaggggagaaagaacagggacacaccttcacacagtgcactcc
aacacatcttcagcaatcacatctgctgtgaattcctgggtgcaatggac
ctgttttgtacagaagacactgtttcttccccaaaccatagctcacactt
tttttctgcctcttttgctataatgtttcctaacattttgggagaaggga
tagacaatagatgttccacatttgggtgggcactccagagatggctgttt
tctgaacattgatcaaatttgagtctctgtattaactgttacccttcaca
aaaattttctcttaataagggtgcttgttggtataaattgagtatagccc
taaatatcttgagacagtttgattctatgcccatttaccaataaaaaaca
aaagcattgaaaaaactctccagcattgaattcatgttaatataggagta
taattctttatgtagagagtcttttaaaaaactgaattaatatatgtata
tcttttctgagattttattgatacatattttcatttatgatttgctctat
tttaattttgaaggtgcatgagtgttcccatcatgtatattatggatatc
acattccctggggatcaagttgcaaacacttgtgagacaacatgcatgtt
ctgcaaatcaaatcagccttgtcagaatgagcatcatattctctctatag
ctcatctcactctccagtcctaagtatgcattctaaaccatcggactatg
ttaataaatatgcatctatgatacagttgtttgaattaatgtaatttaaa
actacaagccaatatagtgaatattttttgtgaaaacaaaccagataaag
ctctttatatgtttaaaaaaaggtacttataatgactaatttcccctata
attagtttactgaaaccattagaataaagaataaatattgcatatattag
gtttttactgatttattttctagatatttggagtttttgtttgttcgtct
ataaggatggccattaggaaatacacacctggaattagcgaacctgagga
ttat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_90012585_90013733
seq2: B6Ng01-196C07.b_50_1174 (reverse)

seq1  ATAATATATATGCAAGTGTGCATGATAGTATTCAAATGTATGTGGAACAT  50
      |||||   ||||||   ||||||||||| ||||  |||||| |||| |  
seq2  ATAAT---TATGCA---GTGCATGATAGGATTC-CATGTAT-TGGACC--  40

seq1  ATTTATCTGTTAAGCTGAGAATACTTAGAA-CTGAGAGTGGAAAACTAAG  99
      ||||||||| | ||||||||   | ||||| |||||||||||||||||  
seq2  ATTTATCTGGT-AGCTGAGA--TCCTAGAACCTGAGAGTGGAAAACTA--  85

seq1  TTTTAGTCATATTTTCCTATCTAGATTTCTAC-ACTGAAATAATCTTTAC  148
       || ||||||| ||||||||||||| |||||| |||||||||||| ||||
seq2  GTTAAGTCATA-TTTCCTATCTAGA-TTCTACAACTGAAATAATC-TTAC  132

seq1  ACTACATTGGAAAAAATACACTGGATGATA-TCTGTTCATACATATTGGT  197
      | |||||  ||||||||||||| ||||||| |||||||||||||||  ||
seq2  A-TACAT--GAAAAAATACACT-GATGATATTCTGTTCATACATAT--GT  176

seq1  TCTTAAATACAATACAGTAAGAAGCTTTTCTATATGAAATATGAGAGTTA  247
         |||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CTAAATACAATACAGTAAGAAGCTTTTCTATATGAAATATGAGAGTTA  224

seq1  TAAAAGAAGATCCAAAGAGGATAAGGTTGAGTTAAAATGTGAATTAATGT  297
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAAGATCC-AAGAGGATAAGGTTGAGTTAAAATGTGAATTAATGT  273

seq1  GAAACAGGTAGCTGCAGATCTTCACATTTTAGTTTCTGTGATCAAATAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAGGTAGCTGCAGATCTTCACATTTTAGTTTCTGTGATCAAATAAA  323

seq1  ACAAAGTTTGATAGGACTTATGTATGTTTTTGAGAGTTTATTTTTATTAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTTTGATAGGACTTATGTATGTTTTTGAGAGTTTATTTTTATTAT  373

seq1  TATTTGTGTAGAGAAAGTTTAAAACAGTATCAGTATATTAACCACGCTCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGTAGAGAAAGTTTAAAACAGTATCAGTATATTAACCACGCTCA  423

seq1  AAGGAGATCCATGCCCAGGATCATAAGTTGTGAGCAATTTTGTTTACTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGATCCATGCCCAGGATCATAAGTTGTGAGCAATTTTGTTTACTTT  473

seq1  GCTATTTTATGTCTATTTTTCTTGTTTGTTTATCTGGTTATATTGTATTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTTATGTCTATTTTTCTTGTTTGTTTATCTGGTTATATTGTATTT  523

seq1  TTTGTGTTAATTCAGTGGGGTGGGTACAAGTTAGGGAGAACCTAATAGGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTAATTCAGTGGGGTGGGTACAAGTTAGGGAGAACCTAATAGGA  573

seq1  GTGGGGGATAGAGAGACCATAATCAGAATATACTGTATGAAAAAAAAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGATAGAGAGACCATAATCAGAATATACTGTATGAAAAAAAAATC  623

seq1  TATTCTCGCTTTAAAAACAAAATAAAAAAGGAAGACTTAAAAATAATAAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCGCTTTAAAAACAAAATAAAAAAGGAAGACTTAAAAATAATAAT  673

seq1  GGATTAATGAACAAAATTTATTCATTGGTATCTTCTGTTCTTTATCTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAATGAACAAAATTTATTCATTGGTATCTTCTGTTCTTTATCTATT  723

seq1  ACCAATACGTTTAAGTTGATAATAATTTAGATATTTCTCTGTTTTTTGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATACGTTTAAGTTGATAATAATTTAGATATTTCTCTGTTTTTTGTT  773

seq1  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGGAAAAGACAAAGTAACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTGGAAAAGACAAAGTAACC  823

seq1  ATGTATTCTTATGACAAATTTTTCATTAAAGTTATTGCTATATCAATTTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCTTATGACAAATTTTTCATTAAAGTTATTGCTATATCAATTTC  873

seq1  TTTATTCTATCTCTTTATTAAAATCAAAACTTTGTTCCATGGGTGATGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTATCTCTTTATTAAAATCAAAACTTTGTTCCATGGGTGATGCT  923

seq1  ACTGACTTCAAATTCTGAGTATTTTAAATAGTGAAAACATTTTAAACAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTCAAATTCTGAGTATTTTAAATAGTGAAAACATTTTAAACAAA  973

seq1  CATGAAATGTTGACTATATACACACTACATTATGTTAAACATATAATCAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATGTTGACTATATACACACTACATTATGTTAAACATATAATCAC  1023

seq1  TTGCAATATTTTATAAATTGAAATAAAATTACTTGGAGGGTGCTTTGAAG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAATATTTTATAAATTGAAATAAAATTACTTGGAGGGTGCTTTGAAG  1073

seq1  AATGAAACATGCTGGGGAAAAATGTGCCTGAAGATAGATGGACAATGAAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACATGCTGGGGAAAAATGTGCCTGAAGATAGATGGACAATGAAT  1123

seq1  TC  1149
      ||
seq2  TC  1125


seq1: chr14_89913787_89914958
seq2: B6Ng01-196C07.g_65_1218

seq1  GAATTCTCCCAGAGACCCTCTCAGCCCAGAATTTCTGCCTTTCTGTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCAGAGACCCTCTCAGCCCAGAATTTCTGCCTTTCTGTTCCT  50

seq1  TCCTAGCAATATAGGCCAGCAGCTTTTTTATTAAAGCTAATCAGAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAATATAGGCCAGCAGCTTTTTTATTAAAGCTAATCAGAGAATG  100

seq1  CCTTAGGCAGGGGAGAAAGAACAGGGACACACCTTCACACAGTGCACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGCAGGGGAGAAAGAACAGGGACACACCTTCACACAGTGCACTCC  150

seq1  AACACATCTTCAGCAATCACATCTGCTGTGAATTCCTGGGTGCAATGGAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACATCTTCAGCAATCACATCTGCTGTGAATTCCTGGGTGCAATGGAC  200

seq1  CTGTTTTGTACAGAAGACACTGTTTCTTCCCCAAACCATAGCTCACACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGTACAGAAGACACTGTTTCTTCCCCAAACCATAGCTCACACTT  250

seq1  TTTTTCTGCCTCTTTTGCTATAATGTTTCCTAACATTTTGGGAGAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGCCTCTTTTGCTATAATGTTTCCTAACATTTTGGGAGAAGGGA  300

seq1  TAGACAATAGATGTTCCACATTTGGGTGGGCACTCCAGAGATGGCTGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATAGATGTTCCACATTTGGGTGGGCACTCCAGAGATGGCTGTTT  350

seq1  TCTGAACATTGATCAAATTTGAGTCTCTGTATTAACTGTTACCCTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAACATTGATCAAATTTGAGTCTCTGTATTAACTGTTACCCTTCACA  400

seq1  AAAATTTTCTCTTAATAAGGGTGCTTGTTGGTATAAATTGAGTATAGCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTTCTCTTAATAAGGGTGCTTGTTGGTATAAATTGAGTATAGCCC  450

seq1  TAAATATCTTGAGACAGTTTGATTCTATGCCCATTTACCAATAAAAAACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCTTGAGACAGTTTGATTCTATGCCCATTTACCAATAAAAAACA  500

seq1  AAAGCATTGAAAAAACTCTCCAGCATTGAATTCATGTTAATATAGGAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATTGAAAAAACTCTCCAGCATTGAATTCATGTTAATATAGGAGTA  550

seq1  TAATTCTTTATGTAGAGAGTCTTTTAAAAAACTGAATTAATATATGTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTTATGTAGAGAGTCTTTTAAAAAACTGAATTAATATATGTATA  600

seq1  TCTTTTCTGAGATTTTATTGATACATATTTTCATTTATGATTTGCTCTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTGAGATTTTATTGATACATATTTTCATTTATGATTTGCTCTAT  650

seq1  TTTAATTTTGAAGGTGCATGAGTGTTCCCATCATGTATATTATGGATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTTGAAGGTGCATGAGTGTTCCCATCATGTATATTATGGATATC  700

seq1  ACATTCCCTGGGGATCAAGTTGCAAACACTTGTGAGACAACATGCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCCCTGGGGATCAAGTTGCAAACACTTGTGAGACAACATGCATGTT  750

seq1  CTGCAAATCAAATCAGCCTTGTCAGAATGAGCATCATATTCTCTCTATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAATCAAATCAGCCTTGTCAGAATGAGCATCATATTCTCTCTATAG  800

seq1  CTCATCTCACTCTCCAGTCCTAAGTATGCATTCTAAACCATCGGACTATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTCACTCTCCAGTCCTAAGTATGCATTCTAAACCATCGGACTATG  850

seq1  TTAATAAATATGCATCTATGATACAGTTGTTTGAATTAATGTAATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATAAATATGCATCTATGATACAGTTGTTTGAATTAATGTAATTTAAA  900

seq1  ACTACAAGCCAATATAGTGAATA-TTTTTGTGAAAACAAACCAGATAAAA  949
      ||||||||||||||||||||||| |||||||||||||||||||||| |||
seq2  ACTACAAGCCAATATAGTGAATATTTTTTGTGAAAACAAACCAGAT-AAA  949

seq1  GCTCTTTATATGTTTAAAAAAAGGTACTTATAATGACTAA-TTCCCCTAT  998
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GCTCTTTATATGTTTAAAAAAAGGTACTTATAATGACTAATTTCCCCTAT  999

seq1  AATTAGTTTACTGAAAACCATTAGAATAAAGAATAAAATATTGCATATAA  1048
      ||||||||||||| |||||||||||||||||||| |||||||||||||| 
seq2  AATTAGTTTACTG-AAACCATTAGAATAAAGAAT-AAATATTGCATATAT  1047

seq1  TAGGTTTTTTACTGATTTATTTTCTTAGAATATTTTGAAGTTTTTTGTTT  1098
      |||| ||||||||||||||||||| ||| |||||| ||        ||||
seq2  TAGG-TTTTTACTGATTTATTTTC-TAG-ATATTTGGA--------GTTT  1086

seq1  TGTTTTGTTCTTAATTAAAGATTGCAATTTAAGAAAAATACCACACACTG  1148
      |  ||||||| |   ||| ||| || | ||| |||| |   ||||| |||
seq2  TTGTTTGTTCGTCTATAAGGATGGCCA-TTAGGAAATA---CACAC-CTG  1131

seq1  AAATTAAGCAGACCTGAGGATTAT  1172
       |||| |||  |||||||||||||
seq2  GAATT-AGCGAACCTGAGGATTAT  1154


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