BAC Information

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BAC

Clone NameB6Ng01-196C24
Chromosome14 (Build37)
Map Location 19,576,540 - 19,728,352
singlet/doubletdoublet
Overlap geneUbe2e2
Upstream geneThrb, LOC627608, Nr1d2, LOC632287, Rpl15, Nkiras1, Ube2e1, LOC627717, LOC238963
Downstream geneLOC627741, LOC100042299, LOC675069, LOC100042322, LOC632470, EG632477, EG632498, EG667341, LOC667344, LOC619996, EG434616, LOC675165, 1700110I01Rik, EG664814, LOC100039452, LOC100038983, LOC100039441, EG432825, LOC673583, EG664855, Nid2, 2700060E02Rik, LOC100039534, Gng2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196C24.bB6Ng01-196C24.g
ACCGA018393GA018394
length1,0721,062
definitionB6Ng01-196C24.b B6Ng01-196C24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,576,540 - 19,577,608)(19,727,287 - 19,728,352)
sequence
gaattcctgatctttccaaaacttttatcatgaaggggtgttggattttg
ccaaatgctttctccgcatctaacgagatgatcatgtgttttttgtcttt
gagtttgtttatatggtggattacattgatggatttccttatataaaatc
atccaggcatccctgggatgaagcccacttcgtcatgatggttgatcgtt
ttgatgtgctcttggattcagtttgcaaggattttattgagtatttttgc
atcgatattcataaggaaaattggtctgaagttctctttctttgttagaa
ctttgtgtggtttaagtatcagagtaattatggcttcaaagaatgaattg
ggtagggtacctcctgtttctattttgtggaatagtttgagaagagttgg
aatctcttggactctttagatctctgttggatccaaacagtcccatttcc
cctaaagaaatagaagcagtcatcaatagtctcccaaccaaaaaagccca
ccactagatgggtttagtgcagagttggagacattttcaaacttcaaaca
gcagtgaatgctgacattttcctgcttcacacatggaggattttacacaa
atactggtaacagacaatcaagtatccacaagacactatagattattttt
aatgattacataaaattaaccctaaattagcctaaaattctctttataga
gggttcgtttagggacctatatgagtaagaacatagctatagttacactg
acattgccagaattatgaaagatcagtctttatgctttggggcataaaga
gatcactgaatgcaatcaaaatgaaatctcttcccttagtatgtcactgt
ccaagcaggtgatatacagggcctcaatgcctgtctctgatgctagacag
acatgtattcaacacagaaaaagaaacagaaagggctgggtggctgcctt
tcagaaatgtatcctcatgttcttaggagcaaacctaaagtgtgtgctga
atgtctgggtggctctggtagttctgaagtgtgcccaggtgaagggaaaa
aaaaaacctaggagagcagttc
gaattcactaatgatctaatgtagagtgtgaaactgacaaggataagaac
agggaaaccctgtgaggcctggctctcctcttcattcatagttatatccc
tactacctagactcaataaacaagagcctggcccacagtatttagtattc
ctagaatgaatgataagggtgaatcggacttatagtcctgttttgaactt
tgaaaaatgccagctaaaacatctgcagatggacaaaatgctgctgaaac
acagtttcaacaatggcatcgaagctcttcaattctattccctgagtgga
agctgacatcacaacatccccaagccccactgccagtgacagaacaacaa
aacgactcaacagtggctggggcagaagggtgttttcttatgaaacattc
attgtaagccaacagcacacacacagaagcataggctaccagaggcagga
tgtagagttcagtggcagaacttctgtgcctgcttagcctgttgaagccc
tgggtcaaatcccagcatcaaaacaaaacaatttttaaagggtttcaaaa
cacagtcaaggctctgctacttctgtattcttgaaacataatcagaagaa
tgggaataggcaaagagttcatgaggttaagactgtctatgaaatactgt
atttgatcatattctaaatatgatgcatttctactaatacactgtactat
gtcggaaatacacacaccatgagacagatttaagtggccacacaaaccag
aaaaccaggtttcactcatttctaactcttcctctcatacatttcttgag
ctgacattcgtaaggacaaaggtgctgtcattttttttttctcagtagtc
agtccaggctagacattactagctgctttgggcagttttcagtgatgtaa
ttggttaaaagccagttcttgaatttattctcgtggaagcatttttctgt
tccagataacagtatgagtcttgtattgcctctagtctctggggtctttt
gcactagtttgttagcctgctgattgactcagacttcacatccatggtgt
cctatgcatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_19576540_19577608
seq2: B6Ng01-196C24.b_46_1117

seq1  GAATTCCTGATCTTTCCAAAACTTTTATCATGAAGGGGTGTTGGATTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCTTTCCAAAACTTTTATCATGAAGGGGTGTTGGATTTTG  50

seq1  CCAAATGCTTTCTCCGCATCTAACGAGATGATCATGTGTTTTTTGTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGCTTTCTCCGCATCTAACGAGATGATCATGTGTTTTTTGTCTTT  100

seq1  GAGTTTGTTTATATGGTGGATTACATTGATGGATTTCCTTATATAAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGTTTATATGGTGGATTACATTGATGGATTTCCTTATATAAAATC  150

seq1  ATCCAGGCATCCCTGGGATGAAGCCCACTTCGTCATGATGGTTGATCGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGGCATCCCTGGGATGAAGCCCACTTCGTCATGATGGTTGATCGTT  200

seq1  TTGATGTGCTCTTGGATTCAGTTTGCAAGGATTTTATTGAGTATTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTGCTCTTGGATTCAGTTTGCAAGGATTTTATTGAGTATTTTTGC  250

seq1  ATCGATATTCATAAGGAAAATTGGTCTGAAGTTCTCTTTCTTTGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATATTCATAAGGAAAATTGGTCTGAAGTTCTCTTTCTTTGTTAGAA  300

seq1  CTTTGTGTGGTTTAAGTATCAGAGTAATTATGGCTTCAAAGAATGAATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGGTTTAAGTATCAGAGTAATTATGGCTTCAAAGAATGAATTG  350

seq1  GGTAGGGTACCTCCTGTTTCTATTTTGTGGAATAGTTTGAGAAGAGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGTACCTCCTGTTTCTATTTTGTGGAATAGTTTGAGAAGAGTTGG  400

seq1  AATCTCTTGGACTCTTTAGATCTCTGTTGGATCCAAACAGTCCCATTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTTGGACTCTTTAGATCTCTGTTGGATCCAAACAGTCCCATTTCC  450

seq1  CCTAAAGAAATAGAAGCAGTCATCAATAGTCTCCCAACCAAAAAAGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAATAGAAGCAGTCATCAATAGTCTCCCAACCAAAAAAGCCCA  500

seq1  CCACTAGATGGGTTTAGTGCAGAGTTGGAGACATTTTCAAACTTCAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAGATGGGTTTAGTGCAGAGTTGGAGACATTTTCAAACTTCAAACA  550

seq1  GCAGTGAATGCTGACATTTTCCTGCTTCACACATGGAGGATTTTACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAATGCTGACATTTTCCTGCTTCACACATGGAGGATTTTACACAA  600

seq1  ATACTGGTAACAGACAATCAAGTATCCACAAGACACTATAGATTATTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGTAACAGACAATCAAGTATCCACAAGACACTATAGATTATTTTT  650

seq1  AATGATTACATAAAATTAACCCTAAATTAGCCTAAAATTCTCTTTATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTACATAAAATTAACCCTAAATTAGCCTAAAATTCTCTTTATAGA  700

seq1  GGGTTCGTTTAGGGACCTATATGAGTAAGAACATAGCTATAGTTACACTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCGTTTAGGGACCTATATGAGTAAGAACATAGCTATAGTTACACTG  750

seq1  ACATTGCCAGAATTATGAAAGATCAGTCTTTATGCTTTGGGGCATAAAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGCCAGAATTATGAAAGATCAGTCTTTATGCTTTGGGGCATAAAGA  800

seq1  GATCACTGAATGCAATCAAAATGAAATCTCTTCCCTTAGTATGTCACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGAATGCAATCAAAATGAAATCTCTTCCCTTAGTATGTCACTGT  850

seq1  CCAAGCAGGTGATATACAGGGCCTCAATGCCTGTCTCTGATGCTAGACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCAGGTGATATACAGGGCCTCAATGCCTGTCTCTGATGCTAGACAG  900

seq1  ACATGTATTCAACACAGAAAAAGAAACAG-AAGGGCTGGGTGGCTGCC-T  948
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  ACATGTATTCAACACAGAAAAAGAAACAGAAAGGGCTGGGTGGCTGCCTT  950

seq1  TCAGAAATGTAATCCTCATGTTCTTAGGAGCAAACCTAAAGTGTGTGCTG  998
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATGT-ATCCTCATGTTCTTAGGAGCAAACCTAAAGTGTGTGCTG  999

seq1  AATGTCTGGGTGGCTCTGGTAGTTCTGAAGTGTG-CCAAGTGAAAGGAAA  1047
      |||||||||||||||||||||||||||||||||| ||| ||||| |||||
seq2  AATGTCTGGGTGGCTCTGGTAGTTCTGAAGTGTGCCCAGGTGAAGGGAAA  1049

seq1  AAAAAA--CCAAGAGAGCAAGTTC  1069
      ||||||  | | |||||| |||||
seq2  AAAAAAACCTAGGAGAGC-AGTTC  1072

seq1: chr14_19727287_19728352
seq2: B6Ng01-196C24.g_66_1127 (reverse)

seq1  CAGATGCCATAGGCCACCATGGGAATGTGAAGTTCTGAGTCAATCAAGCA  50
      |||||| |||||| ||||||||  |||||||| |||||||||||| ||||
seq2  CAGATG-CATAGGACACCATGG--ATGTGAAG-TCTGAGTCAATC-AGCA  45

seq1  GCCTAAACAACTAGTGCAAAAAGACCCCAGAGACTAGA-GCAATACAAGA  99
      | ||||  ||||||||| |||||||||||||||||||| |||||||||||
seq2  GGCTAACAAACTAGTGC-AAAAGACCCCAGAGACTAGAGGCAATACAAGA  94

seq1  CTCATAACCTG-TATCTGGAACAG-AAAATGCTTCCACGAG-ATACATTC  146
      ||||||  ||| |||||||||||| |||||||||||||||| ||| ||||
seq2  CTCATA--CTGTTATCTGGAACAGAAAAATGCTTCCACGAGAATAAATTC  142

seq1  AAGAACTGGCTTTTAACCAATTACATCACTGAAAACTGCCCAAAGCAGCT  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACTGGCTTTTAACCAATTACATCACTGAAAACTGCCCAAAGCAGCT  192

seq1  AGTAATGTCTAGCCTGGAACTGACTACTGAGAAAAAAAAAATGACAGCAC  246
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGTAATGTCTAGCCTGG-ACTGACTACTGAGAAAAAAAAAATGACAGCAC  241

seq1  CTTTGTCCTTACGAATGTCAGCTCAAG-AATGTATGAGAGGAAGAGTTAG  295
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CTTTGTCCTTACGAATGTCAGCTCAAGAAATGTATGAGAGGAAGAGTTAG  291

seq1  AAATGAGTGAAACCTGGTTTTCTGGTTTGTGTGGCCACTTAAATCTGTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGAAACCTGGTTTTCTGGTTTGTGTGGCCACTTAAATCTGTCT  341

seq1  CATGGTGTGTGTATTTCCGACATAGTACAGTGTATTAGTAGAAATGCATC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGTGTGTATTTCCGACATAGTACAGTGTATTAGTAGAAATGCATC  391

seq1  ATATTTAGAATATGATCAAATACAGTATTTCATAGACAGTCTTAACCTCA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAGAATATGATCAAATACAGTATTTCATAGACAGTCTTAACCTCA  441

seq1  TGAACTCTTTGCCTATTCCCATTCTTCTGATTATGTTTCAAGAATACAGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTTTGCCTATTCCCATTCTTCTGATTATGTTTCAAGAATACAGA  491

seq1  AGTAGCAGAGCCTTGACTGTGTTTTGAAACCCTTTAAAAATTGTTTTGTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAGCCTTGACTGTGTTTTGAAACCCTTTAAAAATTGTTTTGTT  541

seq1  TTGATGCTGGGATTTGACCCAGGGCTTCAACAGGCTAAGCAGGCACAGAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGCTGGGATTTGACCCAGGGCTTCAACAGGCTAAGCAGGCACAGAA  591

seq1  GTTCTGCCACTGAACTCTACATCCTGCCTCTGGTAGCCTATGCTTCTGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGCCACTGAACTCTACATCCTGCCTCTGGTAGCCTATGCTTCTGTG  641

seq1  TGTGTGCTGTTGGCTTACAATGAATGTTTCATAAGAAAACACCCTTCTGC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGTTGGCTTACAATGAATGTTTCATAAGAAAACACCCTTCTGC  691

seq1  CCCAGCCACTGTTGAGTCGTTTTGTTGTTCTGTCACTGGCAGTGGGGCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCACTGTTGAGTCGTTTTGTTGTTCTGTCACTGGCAGTGGGGCTT  741

seq1  GGGGATGTTGTGATGTCAGCTTCCACTCAGGGAATAGAATTGAAGAGCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGTTGTGATGTCAGCTTCCACTCAGGGAATAGAATTGAAGAGCTT  791

seq1  CGATGCCATTGTTGAAACTGTGTTTCAGCAGCATTTTGTCCATCTGCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGCCATTGTTGAAACTGTGTTTCAGCAGCATTTTGTCCATCTGCAGA  841

seq1  TGTTTTAGCTGGCATTTTTCAAAGTTCAAAACAGGACTATAAGTCCGATT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGCTGGCATTTTTCAAAGTTCAAAACAGGACTATAAGTCCGATT  891

seq1  CACCCTTATCATTCATTCTAGGAATACTAAATACTGTGGGCCAGGCTCTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTATCATTCATTCTAGGAATACTAAATACTGTGGGCCAGGCTCTT  941

seq1  GTTTATTGAGTCTAGGTAGTAGGGATATAACTATGAATGAAGAGGAGAGC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTGAGTCTAGGTAGTAGGGATATAACTATGAATGAAGAGGAGAGC  991

seq1  CAGGCCTCACAGGGTTTCCCTGTTCTTATCCTTGTCAGTTTCACACTCTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTCACAGGGTTTCCCTGTTCTTATCCTTGTCAGTTTCACACTCTA  1041

seq1  CATTAGATCATTAGTGAATTC  1066
      |||||||||||||||||||||
seq2  CATTAGATCATTAGTGAATTC  1062