BAC Information

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BAC

Clone NameB6Ng01-196N09
Chromosome14 (Build37)
Map Location 56,175,091 - 56,175,942
singlet/doubletsinglet
Overlap genenone
Upstream geneJub, 4931414P19Rik, Psmb5, 5830406J20Rik, Cdh24, Acin1, LOC667711, 1700123O20Rik, LOC100042676, Cebpe, Slc7a8, LOC667893, Homez, Ppp1r3e, Bcl2l2, Pabpn1, Slc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2
Downstream geneWdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik, 2310014G06Rik, Cma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-196N09.bB6Ng01-196N09.g
ACCGA018869GA018870
length802857
definitionB6Ng01-196N09.b B6Ng01-196N09.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaagtctgtggaagagcagcctgtgcttttaactgctgagccatc
tctccagccccccttaacttaatccttaaccttgaaggccattagacagt
gttctctggtctaatttcatcctttccttcctactagtttcagcactttt
gtttttgcctgtgattgtgtgtgtgtgtgtgtgcaggttgagtatcactc
agctctgtgtttgtgatggtatttgttctgcttgctattctgagttttct
ggatctatgtttagtatctatcattaatcgcttctcagccttttggctaa
gatcaagtgtagtatctatcattactttgggacacttcttagtcattgct
ccaaacatttcttcatcctctagtctcactgtgtgtaacagtagttttta
tttacctgtctctgtctgctaatctaggccttgtatggaagcgtctagcc
tccaaactatctaatctaggcctggaaggttttcagcctctgagattttc
ttagttaggttttcactgctgtaaagagacaccatgaccaaggcaactct
tataagggacaacttttaatcagggttggctttacaagttcagagtctca
atccattatcatcatggcagaatgcatggcagtgtccaggaaggcatggt
actagagaaggagccaagagttttacatcttgttcccaaaggcaaacagg
agaagactggcttccaggcagctaggagaagagtctcaaagccccaccac
agtgtcacactttcttccgacaaggccacatctactccaaacaaggcaca
cc
gaattcttgcctagcacgtgcaaagtcctgggttcaaaccccagaaccat
actcttctataaaacaaaacacacactcatgcacacacacacacacacac
acacacacacacacacacacggacacaaatccttttatatgtgtatggct
gctcagcctgcacatgtatctgtatacatatgtatcaggaatggagtggc
agatggttgggagcttccatgtggatacttgtcctcgaaaagaacagcca
gccgggcatggtggcacaggcctttaatcccagcactcgggaggcagaag
caagcagatttctgaggtcgaggccagcctggtctacagagtgagttcca
ggacagccagagctcttaaccacttaaccatctatcctgtcctgcccaat
gtccccagatctaatccttaaggatgtagaaattcttgggacgtaactca
gttggtagaactcttccctagcatgcatgaagccctagtcaatctaagtt
ctatataaagctgggtatggtgtagttcccagcattcaaaacttgagagg
cattcgaggtcagagttagcctcagctatatagtgaattccagatccgcc
taggctacatgaaatgctgctccctcccccaaaaaagacccacgacatga
gagtgttagactattttcatcactatccaactgttttctaataaacacat
tttaaaagtcccagatatattagcacattactccccttccatcttacaca
ggaaatgctttctttcgtttagtgtgcacttgtggggcatcagtcccttc
agaagactgagttcctacaatcaccaggctcctgtttgcaacccagagag
gctgaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56175091_56175942
seq2: B6Ng01-196N09.g_67_923

seq1  GAATTCTTGCCTAGCACGTGCAAAGTCCTGGGTTCAAACCCCAGAACCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCCTAGCACGTGCAAAGTCCTGGGTTCAAACCCCAGAACCAT  50

seq1  ACTCTTCTATAAAACAAAACACACACTCATGCACACACACACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTATAAAACAAAACACACACTCATGCACACACACACACACACAC  100

seq1  ACACACACACACACACACACGGACACAAATCCTTTTATATGTGTATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACGGACACAAATCCTTTTATATGTGTATGGCT  150

seq1  GCTCAGCCTGCACATGTATCTGTATACATATGTATCAGGAATGGAGTGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTGCACATGTATCTGTATACATATGTATCAGGAATGGAGTGGC  200

seq1  AGATGGTTGGGAGCTTCCATGTGGATACTTGTCCTCGAAAAGAACAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTGGGAGCTTCCATGTGGATACTTGTCCTCGAAAAGAACAGCCA  250

seq1  GCCGGGCATGGTGGCACAGGCCTTTAATCCCAGCACTCGGGAGGCAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGGCATGGTGGCACAGGCCTTTAATCCCAGCACTCGGGAGGCAGAAG  300

seq1  CAAGCAGATTTCTGAGGTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCAGATTTCTGAGGTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCA  350

seq1  GGACAGCCAGAGCTCTTAACCACTTAACCATCTATCCTGTCCTGCCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCCAGAGCTCTTAACCACTTAACCATCTATCCTGTCCTGCCCAAT  400

seq1  GTCCCCAGATCTAATCCTTAAGGATGTAGAAATTCTTGGGACGTAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAGATCTAATCCTTAAGGATGTAGAAATTCTTGGGACGTAACTCA  450

seq1  GTTGGTAGAACTCTTCCCTAGCATGCATGAAGCCCTAGTCAATCTAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTAGAACTCTTCCCTAGCATGCATGAAGCCCTAGTCAATCTAAGTT  500

seq1  CTATATAAAGCTGGGTATGGTGTAGTTCCCAGCATTC-AAACTTGAGAGG  549
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTATATAAAGCTGGGTATGGTGTAGTTCCCAGCATTCAAAACTTGAGAGG  550

seq1  CA-TCGAGGTCAGAGTTAGCCTCAGCTATATAGTGAATTCCAGATCCGCC  598
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCGAGGTCAGAGTTAGCCTCAGCTATATAGTGAATTCCAGATCCGCC  600

seq1  TAGGCTACATGAAATGCTGCTCCCTCCCCCAAAAAAGACCCACGACATGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACATGAAATGCTGCTCCCTCCCCCAAAAAAGACCCACGACATGA  650

seq1  GAGTGTTAGACTA-TTTCATCACTATCCAACTGTTTTCTAATAAACACAT  697
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAGACTATTTTCATCACTATCCAACTGTTTTCTAATAAACACAT  700

seq1  TTT-AAAGTCCCAAGATAAATTAGCACATTACTCCCCTTCCATCTTACAC  746
      ||| |||||||| ||||| |||||||||||||||||||||||||||||||
seq2  TTTAAAAGTCCC-AGATATATTAGCACATTACTCCCCTTCCATCTTACAC  749

seq1  AGGAAATGC-TTCTTTCGTTTAGTGTGCACTTGTGGGGCATCAGTCCCTT  795
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGCTTTCTTTCGTTTAGTGTGCACTTGTGGGGCATCAGTCCCTT  799

seq1  CAGAAGACTGAGTTCCTACAATCACCAGGCTCCTGTTTGCAA-CCAGAGA  844
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CAGAAGACTGAGTTCCTACAATCACCAGGCTCCTGTTTGCAACCCAGAGA  849

seq1  GGCTGAGA  852
      ||||||||
seq2  GGCTGAGA  857