BAC Information

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BAC

Clone NameB6Ng01-197B01
Chromosome14 (Build37)
Map Location 56,518,616 - 56,519,313
singlet/doubletsinglet
Overlap gene2310014G06Rik
Upstream geneSlc22a17, Efs, Il25, Cmtm5, Myh6, Myh7, Ngdn, Zfhx2, Thtpa, Ap1g2, Jph4, LOC667938, Dhrs2, LOC100042720, LOC628176, LOC100042729, EG667952, Dhrs4, BC036313, Cpne6, Nrl, Pck2, Wdr23, 1110028A07Rik, Psme1, 1500005A01Rik, Psme2, Rnf31, Isgf3g, Rec8L1, Ipo4, Tm9sf1, Tssk4, 1810034K20Rik, Nedd8, Gmpr2, Tinf2, Tgm1, Rabggta, Dhrs1, 2610027L16Rik, Cideb, Ltb4r2, Ltb4r1, Adcy4, Ripk3, Nfatc4, BC030046, Cbln3, 9130227C08Rik
Downstream geneCma1, Cma2, LOC100042759, EG545056, Mcpt1, Mcpt9, Mcpt2, Mcpt4, Mcpt8, Ctsg, Gzme, Gzmd, Gzmg, LOC672095, Gzmn, LOC100042770, LOC668072, LOC668074, Gzmf, Gzmc, LOC219102, Gzmb, LOC668082, Atp12a, Rnf17, Cenpj, Parp4, LOC100042788, 4930548G07Rik, Pspc1, LOC100043499, 9830124H08Rik, LOC100042797, LOC219106, LOC668118, Zmym2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197B01.bB6Ng01-197B01.g
ACCGA019035GA019036
length319700
definitionB6Ng01-197B01.b B6Ng01-197B01.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctttctttctttctttctttctttctttctttctttctttctt
tctctctctctctctctctctcttttctttttctttttctgtttgtttgt
ttgtttctatggttttttttttcgagacagggtttctctgtgtagccctg
gctgtcctggatctcactctgtagaccaggctggccttgaactcagaaat
tcacctccctctgcctcccaagcgctgggactaaaggtgtgcgccaccat
gcccggccctttctttctttttcaaaatttttttttcaagacaaggtttc
tctgtatagccctgggtgt
gaattccacagtgcccgccccctccccacgcccagcgcttcgcggtctag
agttgttctttaggagcggatcctttctgcacttcgtcctccatctcttt
tgcgtcatccacccctcttcccagagaaatttatggtccttcgctattac
tataactccttccgggtcgggggagggtggggcacacctagtactgagat
tcgcgtgaggtgaggctcgtagtcgcgtccggtgtttaaatctcgcgcag
gcgtgctagctccctgtcgctatgcgggtgcttgtaggtgagggagggca
gagtggcgggccggcttaggctgtagccgagagctgagaaaacaggccca
cagggtgcagtctcctaagcaggcaacctagccttggtttcccagcccca
aaagctgaatctgtgcgaccctgtgacttttgtcacctctgcatcgcggg
gtgggttggagaggcctgatgtcagatggggaccgcacccaaaggggccg
ccagcagatgacctaccgccaccccgctgagtaaacagtttgtgctcccc
catcaggtggcgggacgggattcattgggacagccgtaacccagctgctg
agaggcaggggccacgaagttaaattggtctccagacagcctggccccgg
gtcgaatcacgtgggtaggtcgagcttctggaaggtgggtgggagtggca

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_56518616_56519313
seq2: B6Ng01-197B01.g_64_763 (reverse)

seq1  TGCC-CTCCCACCCACCTTCCAGAAGCTCGACCTACCCACGTGATTCGAC  49
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTCCCACCCACCTTCCAGAAGCTCGACCTACCCACGTGATTCGAC  50

seq1  CC-GGGCCAGGCTGTCTGGAGACCAATTTAACTTCGTGGCCCCTGCCTCT  98
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGCCAGGCTGTCTGGAGACCAATTTAACTTCGTGGCCCCTGCCTCT  100

seq1  CAGCAGCTGGGTTACGGCTGTCCCAATGAATCCCGTCCCGCCACCTGATG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCTGGGTTACGGCTGTCCCAATGAATCCCGTCCCGCCACCTGATG  150

seq1  GGGGAGCACAAACTGTTTACTCAGCGGGGTGGCGGTAGGTCATCTGCTGG  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGCACAAACTGTTTACTCAGCGGGGTGGCGGTAGGTCATCTGCTGG  200

seq1  CGGCCCCTTTGGGTGCGGTCCCCATCTGACATCAGGCCTCTCCAACCCAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCCCTTTGGGTGCGGTCCCCATCTGACATCAGGCCTCTCCAACCCAC  250

seq1  CCCGCGATGCAGAGGTGACAAAAGTCACAGGGTCGCACAGATTCAGCTTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCGATGCAGAGGTGACAAAAGTCACAGGGTCGCACAGATTCAGCTTT  300

seq1  TGGGGCTGGGAAACCAAGGCTAGGTTGCCTGCTTAGGAGACTGCACCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCTGGGAAACCAAGGCTAGGTTGCCTGCTTAGGAGACTGCACCCTG  350

seq1  TGGGCCTGTTTTCTCAGCTCTCGGCTACAGCCTAAGCCGGCCCGCCACTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCTGTTTTCTCAGCTCTCGGCTACAGCCTAAGCCGGCCCGCCACTC  400

seq1  TGCCCTCCCTCACCTACAAGCACCCGCATAGCGACAGGGAGCTAGCACGC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCCTCACCTACAAGCACCCGCATAGCGACAGGGAGCTAGCACGC  450

seq1  CTGCGCGAGATTTAAACACCGGACGCGACTACGAGCCTCACCTCACGCGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCGAGATTTAAACACCGGACGCGACTACGAGCCTCACCTCACGCGA  500

seq1  ATCTCAGTACTAGGTGTGCCCCACCCTCCCCCGACCCGGAAGGAGTTATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCAGTACTAGGTGTGCCCCACCCTCCCCCGACCCGGAAGGAGTTATA  550

seq1  GTAATAGCGAAGGACCATAAATTTCTCTGGGAAGAGGGGTGGATGACGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATAGCGAAGGACCATAAATTTCTCTGGGAAGAGGGGTGGATGACGCA  600

seq1  AAAGAGATGGAGGACGAAGTGCAGAAAGGATCCGCTCCTAAAGAACAACT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGGAGGACGAAGTGCAGAAAGGATCCGCTCCTAAAGAACAACT  650

seq1  CTAGACCGCGAAGCGCTGGGCGTGGGGAGGGGGCGGGCACTGTGGAATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACCGCGAAGCGCTGGGCGTGGGGAGGGGGCGGGCACTGTGGAATTC  700