BAC Information

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BAC

Clone NameB6Ng01-197L20
Chromosome14 (Build37)
Map Location 111,759,548 - 111,948,519
singlet/doubletdoublet
Overlap genenone
Upstream geneSlitrk6, EG668772, EG622052, LOC100043491, LOC100043494
Downstream geneSlitrk5, LOC100043501, EG223186
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-197L20.bB6Ng01-197L20.g
ACCGA019526GA019527
length1,0051,098
definitionB6Ng01-197L20.b B6Ng01-197L20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,759,548 - 111,760,565)(111,947,426 - 111,948,519)
sequence
gaattctttatttttcgcctatttcctagaatgtaacagtgaatacttaa
aggctagaaacttaacgcatgtattgtatgaagaaatatctttgacttca
ttttaggtcagagaaaacacctaaaaactttttaagggaaagtatttctg
ttgggaaaaaggtggcatatgttttattcatggcatattcttggcaatac
tcagggctccacactagagaattagtatgattatgagaatcttgtgaaaa
ttttcatgcaatgttcaaatcttaaataatgtcaactatgttgtgagaaa
ctctgacaatatgaaaatgtagcaagcacttctttctttctttctttctt
tctttctttctttctttcattctttctttctttctttctttctttctccc
tttctttctttctttctttctttctttctttctttctttctttctttctt
tctttctttcttttggttgggttttcgagacagggtttctctgcatccca
cggctgtcctggaactcactctgtagaccaggctggcctcaaactcagaa
atctgcctgcctctgcctcccgagtgctgggattaaagacgtgtgccacc
acgcccagctgtagaaagcttttcatgacacctttttatttgttcaccct
caaatgttacaagatgaagacaagttggaaggtcagaagatagtattgtg
taacactttcattaagacagaaataatccatttcaaaaggaaactattca
aggtctttaatacaatccttaaatatctaataaaactggtaacattctgt
atatttaattcaaatgaaccaattaagaaaaaatatacttaaaagagtat
ctggcaactgagccacccagagagcatattcttatcctataagtatgctt
acagatgtgaagtgtgcttcaagtgtcctgtatcataatctctcaatgct
tgtttcacatatatatagcactgactctgagtctctgtgatctgtcacag
tcgtt

gaattccaatgaaaggatgttccctagatttgatatgtaataaatgttct
tataagctaataaagaattagttttggtatttactgaatatcactggtca
cgtgtaaagcagtttctctcctttgagaaataaaataaaaaacagaaacc
ctctgggaaagagggatgcattgggaatcttcatctaagagaagactgtc
tcctacactctacttagcacagttggaagccctgatgaattagcacactg
agttctccttcaagcaaggttaatttagagcttttcagacttgagaagca
tccataaattaatttctacagcctataacatttccattagctctttcaga
ataaaatttgaatgtgatatgcatagaaatccttcagtctctcattttct
cccgaggggaagtatcatacagaattctttctgttttaactaatgcctat
cagttatcagttttattcaaatatatgagcttgtgactgtgtaaagaaat
gagttttgtgcaatctaaaacatttgttttctgctcttatagcttttgaa
attattgtaaagtattcatttaaacacaatgttgtttgccttcattgaaa
atttactgtaatctgtagtgacttacatcttttctaatggatgattacat
taatttttatgagtaatttaactacattttctaagtttcctaaacaatag
tatgggttttataatgaaaaaaattattgactgactgtctatatttaatg
aacttgaatttctttaattaatattaaaatacaagtagaattctaaaata
atattaataatacagtggcatctaacgtaagtggtgtttctttaatgtga
atagtttacaatatacttcaagatctttaatttgcgtaatgacatgatat
ggaatcttgaatgtataagtatgggtaaagtatcaaattaattaaaaaaa
ttaaacattagttactattactaatcactactcaagtaattcttgtatag
gaactatacagcttgcctctcatgattttccttaatatatgctgaactta
tcattatggtggtgcaaataccatattgtaatatgtacataaatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_111759548_111760565
seq2: B6Ng01-197L20.b_50_1054

seq1  GAATTCTTTATTTTTCGCCTATTTCCTAGAATGTAACAGTGAATACTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATTTTTCGCCTATTTCCTAGAATGTAACAGTGAATACTTAA  50

seq1  AGGCTAGAAACTTAACGCATGTATTGTATGAAGAAATATCTTTGACTTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAGAAACTTAACGCATGTATTGTATGAAGAAATATCTTTGACTTCA  100

seq1  TTTTAGGTCAGAGAAAACACCTAAAAACTTTTTAAGGGAAAGTATTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGTCAGAGAAAACACCTAAAAACTTTTTAAGGGAAAGTATTTCTG  150

seq1  TTGGGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTTGGCAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAAAAAGGTGGCATATGTTTTATTCATGGCATATTCTTGGCAATAC  200

seq1  TCAGGGCTCCACACTAGAGAATTAGTATGATTATGAGAATCTTGTGAAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGCTCCACACTAGAGAATTAGTATGATTATGAGAATCTTGTGAAAA  250

seq1  TTTTCATGCAATGTTCAAATCTTAAATAATGTCAACTATGTTGTGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATGCAATGTTCAAATCTTAAATAATGTCAACTATGTTGTGAGAAA  300

seq1  CTCTGACAATATGAAAATGTAGCAAGCACTTCTTTCTTTCTTTCTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACAATATGAAAATGTAGCAAGCACTTCTTTCTTTCTTTCTTTCTT  350

seq1  TCTTTCTTTCTTTCTTTCATTCTTTCTTTCTTTCTTTCTTTCTTTCTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCATTCTTTCTTTCTTTCTTTCTTTCTTTCTCCC  400

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  450

seq1  TCTTTCTTTCTTTTGGTTGGGTTTTCGAGACAGGGTTTCTCTGCATCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTTGGTTGGGTTTTCGAGACAGGGTTTCTCTGCATCCCA  500

seq1  CGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTCAAACTCAGAA  550

seq1  ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGTGCCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGACGTGTGCCACC  600

seq1  ACGCCCAGCTGTAGAAAGCTTTTCATGACACCTTTTTATTTGTTCACCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCAGCTGTAGAAAGCTTTTCATGACACCTTTTTATTTGTTCACCCT  650

seq1  CAAATGTTACAAGATGAAGACAAGTTGGAAGGTCAGAAGATAGTATTGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTTACAAGATGAAGACAAGTTGGAAGGTCAGAAGATAGTATTGTG  700

seq1  TAACACTTTCATTAAGACAGAAATAATCCATTTCAAAAGGAAACTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACTTTCATTAAGACAGAAATAATCCATTTCAAAAGGAAACTATTCA  750

seq1  AGGTCTTTAATACAATCCTTAAATATCTAATAAAACTGGTAACATTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTTTAATACAATCCTTAAATATCTAATAAAACTGGTAACATTCTGT  800

seq1  ATATTTAATTCAAATGAACCAATTAAGAAAAAATATACTTAAAAGAGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTAATTCAAATGAACCAATTAAGAAAAAATATACTTAAAAGAGTAT  850

seq1  CTGGCAAACTGAGCCACCCAGAGAGCATATTCTTTATCCTATAAGTATGC  900
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  CTGGC-AACTGAGCCACCCAGAGAGCATATTC-TTATCCTATAAGTATGC  898

seq1  TTACAGATGTGAAGTGTGCTTCAAGTGTCCTGTAATCATAATTCTTCTCA  950
      ||||||||||||||||||||||||||||||||| ||||||||   |||| 
seq2  TTACAGATGTGAAGTGTGCTTCAAGTGTCCTGT-ATCATAAT--CTCTC-  944

seq1  AATGCTTGTTTCACATTATAATATAGCAACTGACTCTGAGTCTCTTGTGA  1000
      ||||||||||||||| ||| ||||||| |||||||||||||||| |||||
seq2  AATGCTTGTTTCACA-TAT-ATATAGC-ACTGACTCTGAGTCTC-TGTGA  990

seq1  TCTGGTCAACAAGTCGTT  1018
      ||| ||||   |||||||
seq2  TCT-GTCA--CAGTCGTT  1005


seq1: chr14_111947426_111948519
seq2: B6Ng01-197L20.g_65_1162 (reverse)

seq1  CCATATTTATGTACATA-TACAATAT-GTATTTGCAC--ACAT-ATGATA  45
      ||||||||||||||||| |||||||| ||||||||||   ||| ||||||
seq2  CCATATTTATGTACATATTACAATATGGTATTTGCACCACCATAATGATA  50

seq1  TG-TCAGCATATATTAAAGGAAATTCATGAGAGGCAAGCTTGTATAAGTT  94
       | |||||||||||| ||||||| ||||||||||||||| ||||| ||||
seq2  AGTTCAGCATATATT-AAGGAAAATCATGAGAGGCAAGC-TGTAT-AGTT  97

seq1  CCTATACAAGAATTACTTGAGTAGTGATTAGTAATAGTAACTAATGTTTA  144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATACAAGAATTACTTGAGTAGTGATTAGTAATAGTAACTAATGTTTA  147

seq1  ATTTTTTTAATTAATTTGATACTTTA-CCATACTTATACATTCAAGATTC  193
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  ATTTTTTTAATTAATTTGATACTTTACCCATACTTATACATTCAAGATTC  197

seq1  CATATCATGTCATTACGCAAATTAAAGATCTTGAAGTATATTGTAAACTA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCATGTCATTACGCAAATTAAAGATCTTGAAGTATATTGTAAACTA  247

seq1  TTCACATTAAAGAAACACCACTTACGTTAGATGCCACTGTATTATTAATA  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTAAAGAAACACCACTTACGTTAGATGCCACTGTATTATTAATA  297

seq1  TTATTTTAGAATTCTACTTGTATTTTAATATTAATTAAAGAAATTCAAGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTAGAATTCTACTTGTATTTTAATATTAATTAAAGAAATTCAAGT  347

seq1  TCATTAAATATAGACAGTCAGTCAATAATTTTTTTCATTATAAAACCCAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAAATATAGACAGTCAGTCAATAATTTTTTTCATTATAAAACCCAT  397

seq1  ACTATTGTTTAGGAAACTTAGAAAATGTAGTTAAATTACTCATAAAAATT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGTTTAGGAAACTTAGAAAATGTAGTTAAATTACTCATAAAAATT  447

seq1  AATGTAATCATCCATTAGAAAAGATGTAAGTCACTACAGATTACAGTAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAATCATCCATTAGAAAAGATGTAAGTCACTACAGATTACAGTAAA  497

seq1  TTTTCAATGAAGGCAAACAACATTGTGTTTAAATGAATACTTTACAATAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGAAGGCAAACAACATTGTGTTTAAATGAATACTTTACAATAA  547

seq1  TTTCAAAAGCTATAAGAGCAGAAAACAAATGTTTTAGATTGCACAAAACT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAAAGCTATAAGAGCAGAAAACAAATGTTTTAGATTGCACAAAACT  597

seq1  CATTTCTTTACACAGTCACAAGCTCATATATTTGAATAAAACTGATAACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTACACAGTCACAAGCTCATATATTTGAATAAAACTGATAACT  647

seq1  GATAGGCATTAGTTAAAACAGAAAGAATTCTGTATGATACTTCCCCTCGG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGCATTAGTTAAAACAGAAAGAATTCTGTATGATACTTCCCCTCGG  697

seq1  GAGAAAATGAGAGACTGAAGGATTTCTATGCATATCACATTCAAATTTTA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAATGAGAGACTGAAGGATTTCTATGCATATCACATTCAAATTTTA  747

seq1  TTCTGAAAGAGCTAATGGAAATGTTATAGGCTGTAGAAATTAATTTATGG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAGAGCTAATGGAAATGTTATAGGCTGTAGAAATTAATTTATGG  797

seq1  ATGCTTCTCAAGTCTGAAAAGCTCTAAATTAACCTTGCTTGAAGGAGAAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTCAAGTCTGAAAAGCTCTAAATTAACCTTGCTTGAAGGAGAAC  847

seq1  TCAGTGTGCTAATTCATCAGGGCTTCCAACTGTGCTAAGTAGAGTGTAGG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGCTAATTCATCAGGGCTTCCAACTGTGCTAAGTAGAGTGTAGG  897

seq1  AGACAGTCTTCTCTTAGATGAAGATTCCCAATGCATCCCTCTTTCCCAGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCTTCTCTTAGATGAAGATTCCCAATGCATCCCTCTTTCCCAGA  947

seq1  GGGTTTCTGTTTTTTATTTTATTTCTCAAAGGAGAGAAACTGCTTTACAC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTCTGTTTTTTATTTTATTTCTCAAAGGAGAGAAACTGCTTTACAC  997

seq1  GTGACCAGTGATATTCAGTAAATACCAAAACTAATTCTTTATTAGCTTAT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAGTGATATTCAGTAAATACCAAAACTAATTCTTTATTAGCTTAT  1047

seq1  AAGAACATTTATTACATATCAAATCTAGGGAACATCCTTTCATTGGAATT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACATTTATTACATATCAAATCTAGGGAACATCCTTTCATTGGAATT  1097

seq1  C  1094
      |
seq2  C  1098


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