BAC Information

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BAC

Clone NameB6Ng01-198B02
Chromosome14 (Build37)
Map Location 85,627,264 - 85,628,359
singlet/doubletsinglet
Overlap genenone
Upstream genePcdh17, 9630013A20Rik, LOC629794
Downstream geneLOC668603, LOC100043301, EG629815
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-198B02.bB6Ng01-198B02.g
ACCGA019760GA019761
length1,1161,191
definitionB6Ng01-198B02.b B6Ng01-198B02.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctttgttcaattctgagccccattttttaatggggttatttgatt
ttctggagtcaaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaaggtcctttctcaatctgttggtggtct
ttttgtcttattgatggtgtctttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaattctcaaacattttataacataaacattttcat
tattagaatttcctaaacaagtgatgtctagaggtaccagcaaagatagc
agatttatgtgccatattagtcagtactcaggagtcaacaagcaacttag
aatacaaatatgctatatcatatcattattacttcaaggagaaaaatata
agtatcacatgcagaagttgatgtaaagttctcaggaagtacagccagct
tcctacacgattcagctttagattactgctgaaaagcagacaaaactacg
tgtgcttatttctataaacttttactatggcttcaatatagtgtaatctt
aagtgaaaaaaaaaatagttaaattccaagattctgttttttagagtagc
acttacattggtatttaagttctaatttatttcttttaaaatgctttccc
ttatgaagtcatgataattacaaaacaacaggataataggaaagttccaa
aatgagggctaaatgaccccaatacttaaaagcatagaacagccaggata
ttgggaatggtagaattctaattccagtttattataattaattgaaagaa
aaatacagaagaaaatgtgaagaagatgtagagtggatagtgtgtaactg
tgtgaaagttttctttggtaaacacagagccatatagaatggataaatac
aatgaaatcttttgtttaaaaaaaaagggtatagtaatattgtactattg
ggttccaaaatatcaggtggagaaaaattaacatttaaccaatatcccca
cttatattttaactacctactaggatataatggtgaacctacatctctcc
tacataagccctaaaaattacaaaaagaataattgtaaaaaatagttttt
ttaatcctggggatgt

gaattcaatataaaagaagggacaatatacccaaatttacgtttcacaat
gaaagcagtgctaagaggaagattcatagcactaagtgcttccataaaga
agttagaaaattctcataccaataatttaaaagtacccctgtaagctata
gaaagaaaagaaccaagcccaccaaaagggagaagaaggcaaaaaacgat
caaaagcagaactgaaatcaatcagtaagaaaaaaataatacaaaagaat
aaagaaaactaggagatggttctttgaggaaatcaacaagataaactaat
cctgaggcaaactaatcaaaagacagagagacagcatccgaataaacaaa
atcagtactgtaaagggagacataaaaactgacattgaggaaattcagag
aatcattgggtcttccaaaaaattgggaagttttaatgaaatgggcagtt
ttctagacaaagaaatggaagcagtcattaaaattctccaaaccaaaaat
aatatatatatatatatatatatatatatatatatatatattcatatata
tatatttatatatataaagtccagggatggttttagtgcagggttctacc
agattttcaaaaaggagtcaataccaatacttctcaaattgttacacaca
cacacacacacacacacacacacaaacaaacacaaagaaaagaaaagaaa
ccacaaggaacattgccaaactcattctatagggtaactgtcaccctgat
acctaaaccacacaaagactcaacaaagaaagaaaaagaaagagaatttc
agatcgagttctctttatgaacattgatgcaagaatatacaataaaatac
ttgcaaactgagtccaagaaaacatcaaagacataatccagcaagagcaa
gtaggcttcattccagggaatacaaacatccatcaaagtttgtctaccat
gaaaacaaactgaaaggaaaaataattcacattgatatatcattagatgc
tgaaaacccaataaaaacccagttaaaatccattagctttttttatataa
aaggttatttaaagtaaagcatggaataaggttcttacctatcccttaat
tgaaccaagccaataatactagccagccataattagcatcaatatggaga
atagcctttaagagaatatttctccacacctcacgtaaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_85627264_85628359
seq2: B6Ng01-198B02.b_46_1161 (reverse)

seq1  ACAT-CACAGGAATAAAAAAATGTATTTTTACAATTAT--CTTTTGT-AT  46
      |||| | ||||| ||||||||    |||||||||||||   |||||| ||
seq2  ACATCCCCAGGATTAAAAAAACTATTTTTTACAATTATTCTTTTTGTAAT  50

seq1  TTTTAGGCCTTATGTAG--GAGATGTAGG-TCAC--ATATAT-CTAGTA-  89
      ||||||| |||||||||  |||||||||| ||||   ||||| |||||| 
seq2  TTTTAGGGCTTATGTAGGAGAGATGTAGGTTCACCATTATATCCTAGTAG  100

seq1  GTAGTTAAAATATAAGTTGGGGATATT-GTTAAATGTTA--TTTTCTC--  134
      |||||||||||||||| |||||||||| |||||||||||  |||||||  
seq2  GTAGTTAAAATATAAG-TGGGGATATTGGTTAAATGTTAATTTTTCTCCA  149

seq1  ACTGATATTTT-GAAACCAATAGTACAATATTACTATACC--TTTTTTTT  181
       |||||||||| ||| ||||||||||||||||||||||||  ||||||||
seq2  CCTGATATTTTGGAACCCAATAGTACAATATTACTATACCCTTTTTTTTT  199

seq1  AAAC-AAAGATTTCATTGTATTTATCCATTCTATATGGCTCTGTGTTTAC  230
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAAGATTTCATTGTATTTATCCATTCTATATGGCTCTGTGTTTAC  249

seq1  CAAAG-AAACTTTCACACAGTTACACACTATCCACTCTACATCTTCTTCA  279
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAACTTTCACACAGTTACACACTATCCACTCTACATCTTCTTCA  299

seq1  CATTTTCTTCTGTATTTTTCTTTCAATTAATTATAATAAACTGGAATTAG  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTCTGTATTTTTCTTTCAATTAATTATAATAAACTGGAATTAG  349

seq1  AATTCTACCATTCCCAATATCCTGGCTGTTCTATGCTTTTAAGTATTGGG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTACCATTCCCAATATCCTGGCTGTTCTATGCTTTTAAGTATTGGG  399

seq1  GTCATTTAGCCCTCATTTTGGAACTTTCCTATTATCCTGTTGTTTTGTAA  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATTTAGCCCTCATTTTGGAACTTTCCTATTATCCTGTTGTTTTGTAA  449

seq1  TTATCATGACTTCATAAGGGAAAGCATTTTAAAAGAAATAAATTAGAACT  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATGACTTCATAAGGGAAAGCATTTTAAAAGAAATAAATTAGAACT  499

seq1  TAAATACCAATGTAAGTGCTACTCTAAAAAACAGAATCTTGGAATTTAAC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACCAATGTAAGTGCTACTCTAAAAAACAGAATCTTGGAATTTAAC  549

seq1  TATTTTTTTTTTCACTTAAGATTACACTATATTGAAGCCATAGTAAAAGT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTTCACTTAAGATTACACTATATTGAAGCCATAGTAAAAGT  599

seq1  TTATAGAAATAAGCACACGTAGTTTTGTCTGCTTTTCAGCAGTAATCTAA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGAAATAAGCACACGTAGTTTTGTCTGCTTTTCAGCAGTAATCTAA  649

seq1  AGCTGAATCGTGTAGGAAGCTGGCTGTACTTCCTGAGAACTTTACATCAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATCGTGTAGGAAGCTGGCTGTACTTCCTGAGAACTTTACATCAA  699

seq1  CTTCTGCATGTGATACTTATATTTTTCTCCTTGAAGTAATAATGATATGA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCATGTGATACTTATATTTTTCTCCTTGAAGTAATAATGATATGA  749

seq1  TATAGCATATTTGTATTCTAAGTTGCTTGTTGACTCCTGAGTACTGACTA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGCATATTTGTATTCTAAGTTGCTTGTTGACTCCTGAGTACTGACTA  799

seq1  ATATGGCACATAAATCTGCTATCTTTGCTGGTACCTCTAGACATCACTTG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGCACATAAATCTGCTATCTTTGCTGGTACCTCTAGACATCACTTG  849

seq1  TTTAGGAAATTCTAATAATGAAAATGTTTATGTTATAAAATGTTTGAGAA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGAAATTCTAATAATGAAAATGTTTATGTTATAAAATGTTTGAGAA  899

seq1  TTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAGACA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAGACA  949

seq1  CCATCAATAAGACAAAAAGACCACCAACAGATTGAGAAAGGACCTTTACC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAATAAGACAAAAAGACCACCAACAGATTGAGAAAGGACCTTTACC  999

seq1  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACTCAA  1049

seq1  GAAGGTTGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTGACTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAG  1099

seq1  AATTGAACAAAGAATTC  1096
      |||||||||||||||||
seq2  AATTGAACAAAGAATTC  1116


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